Wall clock time and date at job start Tue Mar 31 2020 05:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 110.99781 * 2 1 4 4 C 1.50698 * 109.47203 * 66.04823 * 3 2 1 5 5 O 1.21286 * 119.99826 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00325 * 179.97438 * 4 3 2 7 7 C 1.46496 * 120.00243 * 179.97438 * 6 4 3 8 8 C 1.53005 * 109.46887 * 186.81668 * 7 6 4 9 9 C 1.50690 * 115.55151 * 37.94852 * 8 7 6 10 10 H 1.08004 * 119.99949 * 264.53513 * 9 8 7 11 11 C 1.37886 * 120.00273 * 84.53433 * 9 8 7 12 12 N 1.31514 * 119.99609 * 1.99698 * 11 9 8 13 13 Si 1.86796 * 119.99896 * 181.99580 * 11 9 8 14 14 H 1.48505 * 109.47131 * 90.00191 * 13 11 9 15 15 H 1.48500 * 109.46893 * 209.99966 * 13 11 9 16 16 H 1.48492 * 109.47541 * 329.99777 * 13 11 9 17 17 C 1.53003 * 117.49641 * 252.23810 * 8 7 6 18 18 C 1.53004 * 60.00122 * 252.51479 * 17 8 7 19 19 C 1.46900 * 111.00045 * 236.04541 * 2 1 3 20 20 H 1.09003 * 109.63863 * 65.87268 * 19 2 1 21 21 C 1.53873 * 109.64586 * 305.57858 * 19 2 1 22 22 C 1.55051 * 106.62365 * 192.96566 * 21 19 2 23 23 S 1.83293 * 102.56470 * 42.43400 * 22 21 19 24 24 O 1.42096 * 109.35336 * 90.18362 * 23 22 21 25 25 O 1.42102 * 109.35190 * 223.38977 * 23 22 21 26 26 C 1.54168 * 109.64470 * 186.30214 * 19 2 1 27 27 H 1.08998 * 109.47502 * 191.04531 * 1 2 3 28 28 H 1.08997 * 109.47209 * 311.05481 * 1 2 3 29 29 H 1.09003 * 109.46881 * 71.04969 * 1 2 3 30 30 H 1.09004 * 109.46869 * 186.04141 * 3 2 1 31 31 H 1.08994 * 109.47260 * 306.04214 * 3 2 1 32 32 H 0.97003 * 119.99523 * 359.97438 * 6 4 3 33 33 H 1.09002 * 109.47307 * 306.81400 * 7 6 4 34 34 H 1.08998 * 109.47414 * 66.81591 * 7 6 4 35 35 H 0.97003 * 119.99698 * 185.02035 * 12 11 9 36 36 H 1.08998 * 117.49849 * 359.97438 * 17 8 7 37 37 H 1.08993 * 117.49690 * 145.02558 * 17 8 7 38 38 H 1.09000 * 117.49868 * 252.51452 * 18 17 8 39 39 H 1.08999 * 117.50190 * 107.49152 * 18 17 8 40 40 H 1.08996 * 110.02744 * 73.67793 * 21 19 2 41 41 H 1.09001 * 110.02794 * 312.25792 * 21 19 2 42 42 H 1.08997 * 110.79015 * 284.16779 * 22 21 19 43 43 H 1.08994 * 110.79017 * 160.70269 * 22 21 19 44 44 H 1.09001 * 110.31950 * 28.86052 * 26 19 2 45 45 H 1.08997 * 110.40498 * 266.70815 * 26 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2984 5 8 1.0047 1.4456 2.1407 6 7 2.0188 3.3199 1.5238 7 6 1.6698 3.9769 2.7858 8 6 2.0680 5.4527 2.7195 9 6 1.8526 6.1249 1.3882 10 1 2.6668 6.1984 0.6823 11 6 0.6161 6.6462 1.0710 12 7 -0.3644 6.5918 1.9458 13 14 0.3338 7.4298 -0.6010 14 1 -0.1322 6.3959 -1.5598 15 1 -0.6951 8.4938 -0.4816 16 1 1.6042 8.0225 -1.0908 17 6 3.2749 5.8967 3.5486 18 6 1.8622 6.2971 3.9788 19 6 1.9954 -0.7660 -1.1376 20 1 1.7350 -0.2638 -2.0693 21 6 1.3937 -2.1822 -1.1305 22 6 2.2264 -3.0229 -2.1324 23 16 3.9435 -2.4999 -1.7613 24 8 4.4885 -3.3490 -0.7607 25 8 4.6469 -2.2950 -2.9789 26 6 3.5285 -0.8796 -1.0209 27 1 -0.3634 -1.0086 0.1969 28 1 -0.3633 0.6749 0.7749 29 1 -0.3633 0.3337 -0.9720 30 1 3.0797 1.3444 -0.1082 31 1 1.5611 1.9273 -0.8309 32 1 2.5248 3.8008 0.8502 33 1 0.5954 3.8976 2.9518 34 1 2.2008 3.4937 3.6059 35 1 -1.2529 6.8918 1.6977 36 1 3.7849 5.1374 4.1415 37 1 3.9134 6.6750 3.1310 38 1 1.5714 7.3389 3.8442 39 1 1.4432 5.8012 4.8544 40 1 0.3518 -2.1466 -1.4487 41 1 1.4650 -2.6131 -0.1319 42 1 1.9602 -2.7755 -3.1600 43 1 2.0973 -4.0887 -1.9440 44 1 3.8314 -0.8530 0.0258 45 1 4.0124 -0.0752 -1.5749 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647175035.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:21 Heat of formation + Delta-G solvation = -68.434549 kcal Electronic energy + Delta-G solvation = -26719.084276 eV Core-core repulsion = 22865.155817 eV Total energy + Delta-G solvation = -3853.928459 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.65870 -38.14409 -37.31481 -36.66742 -36.28659 -34.04885 -33.26289 -32.07482 -30.24632 -28.79495 -26.12680 -25.47236 -25.25143 -23.53817 -21.18947 -20.71615 -19.78862 -19.32934 -19.04328 -17.35908 -17.27218 -16.57100 -16.19499 -15.96511 -15.62185 -15.19438 -14.85584 -14.74304 -14.65751 -14.43250 -14.04901 -13.75883 -13.34203 -13.16867 -12.76956 -12.59328 -12.45121 -12.39059 -12.28404 -12.26684 -12.12097 -11.71352 -11.66951 -11.61296 -11.31452 -11.08276 -10.98920 -10.94353 -10.62461 -10.61077 -10.25959 -9.65784 -9.28493 -9.07549 -8.57283 -8.48315 -8.38454 -7.96820 -6.17607 -4.27728 -0.27761 2.18901 3.15639 3.20476 3.23545 3.25685 3.26339 3.33502 3.74012 4.00522 4.07943 4.19009 4.26021 4.39511 4.50650 4.61220 5.00690 5.09626 5.11194 5.16472 5.22495 5.25359 5.29475 5.45126 5.47123 5.50110 5.57311 5.61059 6.00327 6.12347 6.25954 6.44424 6.50299 6.67532 6.72494 6.83815 6.87756 7.06012 7.21747 7.34524 7.49160 7.70358 8.25526 8.34855 8.74794 8.92347 9.40183 10.90311 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.016996 B = 0.002782 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.041731 B =10060.691720 C =10405.641937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.510 5.510 3 C 0.029 3.971 4 C 0.504 3.496 5 O -0.544 6.544 6 N -0.695 5.695 7 C 0.166 3.834 8 C 0.025 3.975 9 C -0.502 4.502 10 H 0.060 0.940 11 C 0.077 3.923 12 N -0.870 5.870 13 Si 0.887 3.113 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.273 1.273 17 C -0.212 4.212 18 C -0.147 4.147 19 C 0.091 3.909 20 H 0.065 0.935 21 C -0.117 4.117 22 C -0.587 4.587 23 S 2.394 3.606 24 O -0.934 6.934 25 O -0.941 6.941 26 C -0.594 4.594 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.023 0.977 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.403 0.597 33 H 0.066 0.934 34 H 0.036 0.964 35 H 0.262 0.738 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.152 0.848 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.266 -15.389 -8.530 17.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.234 5.234 3 C -0.102 4.102 4 C 0.288 3.712 5 O -0.422 6.422 6 N -0.346 5.346 7 C 0.042 3.958 8 C 0.024 3.976 9 C -0.540 4.540 10 H 0.078 0.922 11 C -0.128 4.128 12 N -0.505 5.505 13 Si 0.715 3.285 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.197 1.197 17 C -0.249 4.249 18 C -0.185 4.185 19 C -0.019 4.019 20 H 0.083 0.917 21 C -0.156 4.156 22 C -0.717 4.717 23 S 2.577 3.423 24 O -0.931 6.931 25 O -0.938 6.938 26 C -0.723 4.723 27 H 0.089 0.911 28 H 0.113 0.887 29 H 0.042 0.958 30 H 0.121 0.879 31 H 0.084 0.916 32 H 0.239 0.761 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.155 0.845 43 H 0.157 0.843 44 H 0.170 0.830 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.667 -16.353 -7.577 18.392 hybrid contribution -1.120 1.649 -1.822 2.701 sum 2.548 -14.704 -9.399 17.636 Atomic orbital electron populations 1.22640 0.85827 1.03688 1.01157 1.61755 1.09171 1.12443 1.40037 1.22071 1.02081 0.89183 0.96831 1.20201 0.80373 0.82266 0.88341 1.90630 1.40357 1.64642 1.46620 1.45925 1.55719 1.11996 1.20914 1.20845 0.99800 0.92262 0.82846 1.19049 0.95750 0.90186 0.92622 1.20306 0.96597 1.37411 0.99688 0.92171 1.24978 0.96413 0.94884 0.96527 1.69995 1.01225 1.46098 1.33223 0.86677 0.78189 0.79302 0.84365 1.20710 1.21155 1.19741 1.23097 0.91844 1.03495 1.06468 1.22475 0.96604 1.01083 0.98338 1.21997 0.90293 0.95311 0.94290 0.91687 1.22305 1.01360 0.92159 0.99726 1.30600 1.22534 1.10010 1.08543 1.08935 0.78612 0.78807 0.75995 1.93635 1.76040 1.63898 1.59512 1.93617 1.70253 1.85555 1.44408 1.30738 1.04157 1.22087 1.15360 0.91065 0.88710 0.95838 0.87912 0.91650 0.76103 0.91613 0.94568 0.92853 0.91624 0.90436 0.89694 0.91797 0.88331 0.88099 0.84522 0.84276 0.82953 0.84248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 8.58 60.06 0.52 0.69 16 2 N -0.51 -5.95 4.33 -235.05 -1.02 -6.97 16 3 C 0.03 0.37 5.31 -4.98 -0.03 0.35 16 4 C 0.50 8.85 7.45 -10.99 -0.08 8.77 16 5 O -0.54 -11.32 14.38 5.55 0.08 -11.24 16 6 N -0.70 -13.00 5.27 -60.29 -0.32 -13.32 16 7 C 0.17 3.58 5.79 -4.04 -0.02 3.55 16 8 C 0.02 0.56 1.78 -155.66 -0.28 0.28 16 9 C -0.50 -12.18 7.44 -34.44 -0.26 -12.44 16 10 H 0.06 1.42 7.81 -52.48 -0.41 1.01 16 11 C 0.08 1.93 5.43 -17.82 -0.10 1.84 16 12 N -0.87 -23.22 12.73 55.43 0.71 -22.52 16 13 Si 0.89 19.51 29.54 -169.99 -5.02 14.49 16 14 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 15 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 16 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 17 C -0.21 -4.31 9.88 -26.73 -0.26 -4.57 16 18 C -0.15 -3.28 9.27 -26.73 -0.25 -3.53 16 19 C 0.09 0.73 2.33 -66.65 -0.16 0.58 16 20 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 21 C -0.12 -0.74 4.86 -25.19 -0.12 -0.86 16 22 C -0.59 -2.91 7.31 38.24 0.28 -2.63 16 23 S 2.39 18.59 6.11 -107.50 -0.66 17.94 16 24 O -0.93 -10.87 18.14 -57.71 -1.05 -11.92 16 25 O -0.94 -10.45 18.15 -57.71 -1.05 -11.50 16 26 C -0.59 -4.32 5.48 37.77 0.21 -4.11 16 27 H 0.07 0.71 6.98 -51.93 -0.36 0.35 16 28 H 0.09 1.46 5.78 -51.93 -0.30 1.16 16 29 H 0.02 0.24 8.11 -51.93 -0.42 -0.18 16 30 H 0.10 1.06 6.77 -51.93 -0.35 0.71 16 31 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 32 H 0.40 7.03 7.52 -40.82 -0.31 6.72 16 33 H 0.07 1.61 8.11 -51.93 -0.42 1.19 16 34 H 0.04 0.76 7.93 -51.93 -0.41 0.35 16 35 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 36 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 37 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 38 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 39 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.10 0.53 7.39 -51.93 -0.38 0.14 16 41 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.14 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.14 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.15 1.20 8.07 -51.93 -0.42 0.78 16 45 H 0.14 0.79 8.00 -51.93 -0.42 0.37 16 LS Contribution 374.84 15.07 5.65 5.65 Total: -1.00 -34.08 374.84 -10.36 -44.45 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -7.14 Total: 7.04 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -0.55 Total: -12.10 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: -0.63 Total: -42.80 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -2.01 Total: -34.65 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Atomic # 16 Polarization: 18.59 SS G_CDS: -0.66 Total: 17.94 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.08 -10.36 -44.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647175035.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.989 kcal (2) G-P(sol) polarization free energy of solvation -34.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds