Wall clock time and date at job start Tue Mar 31 2020 05:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42099 * 108.57868 * 2 1 4 4 O 1.42100 * 108.57936 * 228.97343 * 2 1 3 5 5 C 1.81409 * 101.91988 * 114.48878 * 2 1 3 6 6 C 1.53001 * 109.46946 * 179.97438 * 5 2 1 7 7 H 1.09007 * 110.88613 * 54.29836 * 6 5 2 8 8 C 1.55154 * 111.00264 * 178.17978 * 6 5 2 9 9 C 1.54320 * 102.94122 * 153.61762 * 8 6 5 10 10 N 1.47022 * 107.26910 * 337.80369 * 9 8 6 11 11 C 1.34777 * 125.64628 * 178.91126 * 10 9 8 12 12 O 1.21584 * 120.00207 * 175.09641 * 11 10 9 13 13 N 1.34782 * 120.00152 * 355.09276 * 11 10 9 14 14 C 1.46503 * 119.99941 * 184.93415 * 13 11 10 15 15 C 1.52998 * 109.46643 * 185.00691 * 14 13 11 16 16 C 1.50702 * 115.54896 * 275.60433 * 15 14 13 17 17 H 1.08002 * 119.99430 * 114.77775 * 16 15 14 18 18 C 1.37874 * 120.00568 * 294.77661 * 16 15 14 19 19 N 1.31516 * 119.99578 * 352.22166 * 18 16 15 20 20 Si 1.86796 * 120.00368 * 172.21703 * 18 16 15 21 21 H 1.48506 * 109.47088 * 90.00033 * 20 18 16 22 22 H 1.48491 * 109.47418 * 210.00219 * 20 18 16 23 23 H 1.48504 * 109.47233 * 330.00304 * 20 18 16 24 24 C 1.53005 * 117.49747 * 129.90427 * 15 14 13 25 25 C 1.52999 * 117.50146 * 61.28198 * 15 14 13 26 26 C 1.47522 * 108.71824 * 358.94380 * 10 9 8 27 27 H 1.08999 * 109.46925 * 305.50798 * 1 2 3 28 28 H 1.08998 * 109.47230 * 65.51496 * 1 2 3 29 29 H 1.09002 * 109.46870 * 185.51434 * 1 2 3 30 30 H 1.09001 * 109.47031 * 60.00032 * 5 2 1 31 31 H 1.08998 * 109.46802 * 299.99648 * 5 2 1 32 32 H 1.09009 * 110.71623 * 271.97780 * 8 6 5 33 33 H 1.08999 * 110.72127 * 35.24775 * 8 6 5 34 34 H 1.08995 * 109.88842 * 97.22517 * 9 8 6 35 35 H 1.09003 * 109.87987 * 218.39017 * 9 8 6 36 36 H 0.96999 * 120.00018 * 4.93442 * 13 11 10 37 37 H 1.09002 * 109.46727 * 305.00320 * 14 13 11 38 38 H 1.08997 * 109.47025 * 65.00503 * 14 13 11 39 39 H 0.97000 * 119.99517 * 185.00375 * 19 18 16 40 40 H 1.08998 * 117.50031 * 359.97438 * 24 15 14 41 41 H 1.08997 * 117.49491 * 145.01702 * 24 15 14 42 42 H 1.09005 * 117.49955 * 214.97734 * 25 15 14 43 43 H 1.08995 * 117.49783 * 359.97438 * 25 15 14 44 44 H 1.08999 * 110.37227 * 265.31270 * 26 10 9 45 45 H 1.09002 * 110.40943 * 142.94939 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1887 -0.7358 1.6153 6 6 3.7055 -0.8197 1.7980 7 1 4.1692 0.1558 1.6509 8 6 4.0666 -1.4030 3.1896 9 6 5.4543 -2.0342 2.9502 10 7 5.5735 -2.2921 1.5077 11 6 6.6490 -2.8202 0.8905 12 8 6.6048 -3.0726 -0.2980 13 7 7.7735 -3.0686 1.5908 14 6 8.9767 -3.5407 0.9010 15 6 10.0616 -3.8625 1.9308 16 6 10.8934 -2.6913 2.3861 17 1 10.8439 -2.3606 3.4131 18 6 11.7177 -2.0418 1.4918 19 7 11.8961 -2.5339 0.2853 20 14 12.5809 -0.4632 1.9937 21 1 13.9006 -0.7892 2.5917 22 1 12.7776 0.3951 0.7981 23 1 11.7507 0.2595 2.9907 24 6 10.7538 -5.2229 1.8259 25 6 9.7591 -4.9559 2.9574 26 6 4.3216 -1.8763 0.8474 27 1 -0.3633 0.5969 0.8366 28 1 -0.3633 0.4259 -0.9352 29 1 -0.3633 -1.0229 0.0988 30 1 1.7610 -1.7370 1.6665 31 1 1.7611 -0.1171 2.4043 32 1 4.1268 -0.6108 3.9360 33 1 3.3439 -2.1621 3.4889 34 1 6.2354 -1.3444 3.2694 35 1 5.5357 -2.9707 3.5022 36 1 7.7862 -2.9347 2.5514 37 1 8.7396 -4.4386 0.3304 38 1 9.3360 -2.7648 0.2251 39 1 12.5311 -2.1184 -0.3189 40 1 10.4361 -5.8888 1.0236 41 1 11.8112 -5.2709 2.0862 42 1 10.1621 -4.8283 3.9621 43 1 8.7872 -5.4456 2.8994 44 1 3.6490 -2.7272 0.7391 45 1 4.5340 -1.4332 -0.1256 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649817113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:49 Heat of formation + Delta-G solvation = -68.445679 kcal Electronic energy + Delta-G solvation = -26670.826171 eV Core-core repulsion = 22816.897229 eV Total energy + Delta-G solvation = -3853.928942 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.95438 -37.88669 -37.26179 -36.55820 -36.27755 -33.50623 -32.72443 -32.01536 -30.14120 -29.82790 -27.37578 -25.89506 -24.86033 -23.01560 -21.22951 -20.90048 -19.41521 -19.29822 -19.16898 -17.83895 -17.18497 -16.58399 -16.34760 -16.12451 -15.69401 -15.31958 -14.76268 -14.61971 -14.23290 -13.82549 -13.77150 -13.63381 -13.51114 -13.39569 -12.90191 -12.87528 -12.60671 -12.37088 -12.32562 -12.24256 -12.15621 -11.62609 -11.47501 -11.38195 -11.34121 -11.04378 -10.97252 -10.88581 -10.58324 -10.50522 -10.28249 -9.70992 -9.43314 -9.02710 -8.57458 -8.50725 -8.19037 -7.92184 -6.05447 -4.12268 -0.40342 2.37202 2.96565 3.28177 3.29292 3.36846 3.38143 3.61097 3.75564 4.06040 4.07574 4.27399 4.35560 4.37793 4.48834 4.65818 4.71993 4.90883 4.99427 5.16856 5.18420 5.19353 5.23649 5.40912 5.50259 5.60237 5.80769 5.84404 5.92153 6.03249 6.33204 6.41350 6.50893 6.64310 6.71584 6.93146 7.07457 7.34733 7.43395 7.54924 7.60100 7.86762 8.37249 8.61032 8.87101 9.21482 9.52564 11.02323 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.017655 B = 0.002774 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.573692 B =10090.597264 C =10549.286253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.414 3.586 3 O -0.937 6.937 4 O -0.926 6.926 5 C -0.599 4.599 6 C -0.098 4.098 7 H 0.103 0.897 8 C -0.113 4.113 9 C 0.097 3.903 10 N -0.643 5.643 11 C 0.715 3.285 12 O -0.592 6.592 13 N -0.723 5.723 14 C 0.180 3.820 15 C 0.036 3.964 16 C -0.500 4.500 17 H 0.060 0.940 18 C 0.072 3.928 19 N -0.873 5.873 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.164 4.164 25 C -0.208 4.208 26 C 0.120 3.880 27 H 0.126 0.874 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.393 0.607 37 H 0.039 0.961 38 H 0.078 0.922 39 H 0.263 0.737 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.562 3.709 7.002 25.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.596 3.404 3 O -0.934 6.934 4 O -0.923 6.923 5 C -0.728 4.728 6 C -0.118 4.118 7 H 0.122 0.878 8 C -0.152 4.152 9 C -0.026 4.026 10 N -0.383 5.383 11 C 0.417 3.583 12 O -0.470 6.470 13 N -0.376 5.376 14 C 0.057 3.943 15 C 0.035 3.965 16 C -0.538 4.538 17 H 0.078 0.922 18 C -0.132 4.132 19 N -0.509 5.509 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.198 1.198 24 C -0.203 4.203 25 C -0.246 4.246 26 C -0.004 4.004 27 H 0.145 0.855 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.155 0.845 31 H 0.156 0.844 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.227 0.773 37 H 0.058 0.942 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -23.841 3.853 5.171 24.697 hybrid contribution -0.098 0.565 1.394 1.507 sum -23.939 4.418 6.565 25.213 Atomic orbital electron populations 1.30309 1.27278 1.11479 1.11719 1.08115 0.78215 0.76104 0.77982 1.93618 1.78856 1.34460 1.86444 1.93667 1.78445 1.66687 1.53496 1.30287 1.04564 1.14374 1.23596 1.22137 0.90388 1.01184 0.98114 0.87845 1.22627 0.96322 1.00515 0.95734 1.21989 0.97576 1.00463 0.82600 1.47508 1.15256 1.68163 1.07401 1.15579 0.79346 0.78564 0.84805 1.90905 1.82936 1.59282 1.13921 1.45315 1.10704 1.70610 1.10938 1.20919 0.80762 0.98357 0.94234 1.19073 0.94834 0.88809 0.93803 1.20407 1.24937 1.12695 0.95756 0.92178 1.24989 0.96293 0.97172 0.94729 1.69965 1.34035 1.40168 1.06723 0.86613 0.79726 0.83678 0.78120 1.20718 1.21093 1.19822 1.22709 0.97008 1.01881 0.98656 1.22871 0.99007 1.07596 0.95083 1.22271 0.85344 0.96296 0.96520 0.85501 0.85271 0.85337 0.84510 0.84401 0.89522 0.90115 0.91067 0.91381 0.77336 0.94221 0.90387 0.92733 0.91607 0.89979 0.90457 0.91521 0.91107 0.89279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.93 10.62 101.05 1.07 -0.85 16 2 S 2.41 16.94 5.28 -107.50 -0.57 16.37 16 3 O -0.94 -10.42 18.10 -57.83 -1.05 -11.47 16 4 O -0.93 -10.78 16.53 -57.83 -0.96 -11.74 16 5 C -0.60 -2.78 5.30 37.16 0.20 -2.58 16 6 C -0.10 -0.87 3.03 -88.47 -0.27 -1.14 16 7 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 8 C -0.11 -0.84 6.42 -24.90 -0.16 -1.00 16 9 C 0.10 1.09 6.17 -3.07 -0.02 1.07 16 10 N -0.64 -10.14 3.33 -176.16 -0.59 -10.72 16 11 C 0.72 14.89 8.48 -86.91 -0.74 14.16 16 12 O -0.59 -14.83 16.62 5.29 0.09 -14.74 16 13 N -0.72 -14.90 5.42 -65.22 -0.35 -15.25 16 14 C 0.18 4.35 5.53 -4.04 -0.02 4.33 16 15 C 0.04 0.86 1.32 -155.66 -0.21 0.65 16 16 C -0.50 -13.15 8.82 -34.44 -0.30 -13.46 16 17 H 0.06 1.55 7.83 -52.49 -0.41 1.14 16 18 C 0.07 1.96 5.22 -17.82 -0.09 1.86 16 19 N -0.87 -24.74 12.60 55.43 0.70 -24.04 16 20 Si 0.89 20.93 29.55 -169.99 -5.02 15.90 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 C -0.16 -3.76 9.88 -26.73 -0.26 -4.03 16 25 C -0.21 -4.31 9.78 -26.73 -0.26 -4.57 16 26 C 0.12 1.61 5.32 -2.48 -0.01 1.59 16 27 H 0.13 0.11 8.14 -51.92 -0.42 -0.31 16 28 H 0.13 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.13 0.15 8.14 -51.92 -0.42 -0.28 16 30 H 0.14 0.32 8.03 -51.92 -0.42 -0.10 16 31 H 0.14 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.09 0.49 8.14 -51.92 -0.42 0.07 16 33 H 0.08 0.46 8.04 -51.93 -0.42 0.05 16 34 H 0.07 0.81 8.11 -51.93 -0.42 0.38 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.39 7.20 7.39 -40.82 -0.30 6.90 16 37 H 0.04 0.98 7.87 -51.93 -0.41 0.57 16 38 H 0.08 2.17 7.26 -51.93 -0.38 1.79 16 39 H 0.26 7.16 8.32 -40.82 -0.34 6.82 16 40 H 0.07 1.45 8.06 -51.93 -0.42 1.03 16 41 H 0.08 1.95 8.14 -51.93 -0.42 1.53 16 42 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 43 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.07 0.86 7.96 -51.93 -0.41 0.45 16 45 H 0.09 1.42 7.45 -51.93 -0.39 1.03 16 LS Contribution 382.36 15.07 5.76 5.76 Total: -1.00 -38.30 382.36 -10.40 -48.70 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -7.33 Total: 5.19 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -1.08 Total: -3.96 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: -0.24 Total: -50.02 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -1.91 Total: -37.95 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 16.94 SS G_CDS: -0.57 Total: 16.37 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -38.30 -10.40 -48.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649817113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.746 kcal (2) G-P(sol) polarization free energy of solvation -38.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds