Wall clock time and date at job start Tue Mar 31 2020 05:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42103 * 108.58089 * 2 1 4 4 O 1.42102 * 108.57827 * 228.97685 * 2 1 3 5 5 C 1.81398 * 101.92484 * 114.49057 * 2 1 3 6 6 C 1.50703 * 112.84733 * 295.92326 * 5 2 1 7 7 O 1.21285 * 119.99760 * 123.06727 * 6 5 2 8 8 N 1.34773 * 120.00139 * 303.06503 * 6 5 2 9 9 C 1.46498 * 119.99630 * 175.31552 * 8 6 5 10 10 C 1.53786 * 113.61264 * 155.00429 * 9 8 6 11 11 C 1.53774 * 87.08027 * 89.11704 * 10 9 8 12 12 C 1.53004 * 113.61412 * 139.98292 * 11 10 9 13 13 N 1.46502 * 109.47326 * 174.99905 * 12 11 10 14 14 C 1.36935 * 120.00161 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99655 * 359.97438 * 14 13 12 16 16 C 1.38810 * 119.99904 * 180.02562 * 14 13 12 17 17 N 1.31613 * 120.00144 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99714 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47038 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46736 * 119.99631 * 18 16 14 21 21 H 1.48500 * 109.47316 * 239.99552 * 18 16 14 22 22 C 1.53780 * 87.08573 * 25.43404 * 11 10 9 23 23 C 1.53780 * 113.69141 * 67.19468 * 5 2 1 24 24 C 1.53788 * 87.07967 * 139.99247 * 23 5 2 25 25 C 1.53778 * 87.08189 * 334.56872 * 24 23 5 26 26 H 1.09004 * 109.46658 * 300.77598 * 1 2 3 27 27 H 1.08997 * 109.47421 * 60.77810 * 1 2 3 28 28 H 1.09004 * 109.46929 * 180.78051 * 1 2 3 29 29 H 0.96994 * 120.00111 * 355.32719 * 8 6 5 30 30 H 1.09004 * 112.91045 * 23.75719 * 9 8 6 31 31 H 1.08996 * 113.61069 * 334.56704 * 10 9 8 32 32 H 1.09004 * 113.61388 * 203.66911 * 10 9 8 33 33 H 1.09002 * 113.61456 * 270.79810 * 11 10 9 34 34 H 1.08996 * 109.47216 * 295.00186 * 12 11 10 35 35 H 1.08998 * 109.47138 * 55.00038 * 12 11 10 36 36 H 0.96998 * 119.99967 * 359.97438 * 13 12 11 37 37 H 0.97006 * 119.99925 * 179.97438 * 17 16 14 38 38 H 1.08995 * 113.61352 * 89.11524 * 22 11 10 39 39 H 1.08997 * 113.61781 * 220.02212 * 22 11 10 40 40 H 1.08997 * 113.61423 * 254.54170 * 23 5 2 41 41 H 1.08994 * 113.61328 * 25.44603 * 23 5 2 42 42 H 1.08998 * 113.61113 * 220.01826 * 24 23 5 43 43 H 1.09005 * 113.61329 * 89.11952 * 24 23 5 44 44 H 1.09004 * 113.61108 * 270.88085 * 25 24 23 45 45 H 1.08994 * 113.69435 * 139.99655 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7357 1.6152 6 6 1.7156 0.1116 2.7681 7 8 0.9550 -0.3535 3.5904 8 7 2.1378 1.3861 2.8855 9 6 1.5994 2.2412 3.9462 10 6 2.5417 3.3870 4.3515 11 6 1.8632 4.2271 3.2567 12 6 1.6186 5.6816 3.6635 13 7 1.0822 6.4248 2.5206 14 6 0.7843 7.7553 2.6478 15 1 0.9445 8.2567 3.5909 16 6 0.2756 8.4592 1.5650 17 7 0.0799 7.8481 0.4159 18 14 -0.1313 10.2741 1.7389 19 1 0.1779 10.7205 3.1210 20 1 0.6798 11.0580 0.7730 21 1 -1.5744 10.4868 1.4605 22 6 0.6326 3.3223 3.4349 23 6 1.7824 -2.2144 1.7298 24 6 3.0956 -2.4341 2.4996 25 6 3.6461 -1.2068 1.7543 26 1 -0.3633 0.5259 0.8830 27 1 -0.3634 0.5017 -0.8968 28 1 -0.3633 -1.0276 0.0140 29 1 2.7979 1.7372 2.2677 30 1 1.2122 1.6742 4.7928 31 1 3.5930 3.1785 4.1534 32 1 2.3660 3.7606 5.3604 33 1 2.3368 4.1349 2.2793 34 1 0.9036 5.7136 4.4856 35 1 2.5584 6.1329 3.9816 36 1 0.9386 5.9745 1.6735 37 1 -0.2759 8.3400 -0.3406 38 1 -0.0649 3.6783 4.1930 39 1 0.1428 3.0615 2.4967 40 1 0.8898 -2.3763 2.3340 41 1 1.7460 -2.7328 0.7717 42 1 3.6019 -3.3645 2.2425 43 1 3.0012 -2.2857 3.5753 44 1 4.1192 -1.4498 0.8028 45 1 4.2583 -0.5546 2.3769 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674595689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:06 Heat of formation + Delta-G solvation = -44.836908 kcal Electronic energy + Delta-G solvation = -27236.460384 eV Core-core repulsion = 23383.555195 eV Total energy + Delta-G solvation = -3852.905189 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -41.02473 -39.22941 -37.68822 -37.08275 -36.38717 -34.56361 -33.24350 -30.84847 -29.98442 -27.84320 -26.52481 -26.23121 -25.52903 -23.53493 -22.33784 -21.38436 -20.17521 -19.31216 -19.11286 -18.16474 -17.03406 -16.79355 -16.48775 -16.30342 -15.95338 -15.35745 -14.94606 -14.82424 -14.42829 -14.08349 -13.89119 -13.56550 -13.48333 -13.30379 -13.09274 -13.00322 -12.88620 -12.74553 -12.44761 -12.37032 -12.34540 -12.12808 -11.68298 -11.48742 -11.37343 -11.08367 -11.01628 -10.82320 -10.61653 -10.43044 -10.33642 -10.10223 -10.06697 -9.81006 -9.59241 -9.14496 -8.81687 -6.85554 -5.71476 -2.99687 -0.46714 1.99633 2.42311 2.63120 3.12290 3.40552 3.45866 3.51223 3.53654 3.73392 3.90951 4.18815 4.24084 4.54311 4.60849 4.61358 4.65502 4.78769 4.80765 5.01509 5.10442 5.12486 5.13719 5.35482 5.41222 5.43826 5.48980 5.62157 5.65921 5.79306 5.85657 5.92119 6.00330 6.14910 6.20836 6.27219 6.43741 6.58106 6.82311 6.97548 7.23267 7.74435 7.84038 8.47558 9.58579 10.18478 10.52976 11.51429 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.018275 B = 0.003011 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.743656 B = 9298.427149 C =10247.367226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.649 4.649 2 S 2.428 3.572 3 O -0.918 6.918 4 O -0.927 6.927 5 C -0.613 4.613 6 C 0.554 3.446 7 O -0.518 6.518 8 N -0.700 5.700 9 C 0.112 3.888 10 C -0.137 4.137 11 C -0.115 4.115 12 C 0.163 3.837 13 N -0.732 5.732 14 C -0.238 4.238 15 H 0.070 0.930 16 C -0.016 4.016 17 N -0.932 5.932 18 Si 0.906 3.094 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.140 4.140 23 C -0.097 4.097 24 C -0.124 4.124 25 C -0.098 4.098 26 H 0.131 0.869 27 H 0.137 0.863 28 H 0.132 0.868 29 H 0.412 0.588 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.019 0.981 35 H 0.018 0.982 36 H 0.384 0.616 37 H 0.254 0.746 38 H 0.093 0.907 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.107 0.893 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.442 -24.322 3.334 25.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.608 3.392 3 O -0.915 6.915 4 O -0.924 6.924 5 C -0.703 4.703 6 C 0.336 3.664 7 O -0.394 6.394 8 N -0.352 5.352 9 C 0.008 3.992 10 C -0.176 4.176 11 C -0.134 4.134 12 C 0.035 3.965 13 N -0.376 5.376 14 C -0.369 4.369 15 H 0.088 0.912 16 C -0.211 4.211 17 N -0.581 5.581 18 Si 0.737 3.263 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.178 4.178 23 C -0.135 4.135 24 C -0.162 4.162 25 C -0.136 4.136 26 H 0.150 0.850 27 H 0.155 0.845 28 H 0.150 0.850 29 H 0.250 0.750 30 H 0.121 0.879 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.037 0.963 35 H 0.036 0.964 36 H 0.218 0.782 37 H 0.064 0.936 38 H 0.111 0.889 39 H 0.088 0.912 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.100 0.900 43 H 0.109 0.891 44 H 0.125 0.875 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.453 -24.163 3.364 24.998 hybrid contribution -0.596 0.981 -0.073 1.150 sum 4.856 -23.182 3.291 23.913 Atomic orbital electron populations 1.30179 1.25316 1.11966 1.12521 1.07900 0.79198 0.75778 0.76359 1.93643 1.79233 1.33125 1.85490 1.93607 1.79663 1.67399 1.51763 1.31677 1.09930 1.09018 1.19718 1.18661 0.81105 0.81548 0.85080 1.90698 1.35495 1.71999 1.41200 1.45800 1.44509 1.10902 1.33994 1.22050 0.96524 0.90447 0.90213 1.23309 0.98674 0.95124 1.00492 1.22807 0.96202 0.95546 0.98854 1.20627 0.95954 0.88553 0.91325 1.42372 1.77181 1.07965 1.10101 1.19283 1.34936 0.86079 0.96593 0.91233 1.24739 1.02351 0.98134 0.95912 1.69678 1.51507 1.35338 1.01610 0.86133 0.77632 0.85391 0.77140 1.20611 1.21914 1.21942 1.23437 0.97005 0.95289 1.02103 1.22672 1.01182 0.86750 1.02928 1.22749 0.95447 0.97774 1.00225 1.22698 0.88938 0.98601 1.03376 0.85004 0.84495 0.84981 0.75024 0.87917 0.91113 0.88539 0.88756 0.96281 0.96413 0.78201 0.93629 0.88874 0.91209 0.88050 0.87654 0.90036 0.89125 0.87450 0.89119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -5.05 10.42 101.05 1.05 -4.00 16 2 S 2.43 23.44 4.87 -107.50 -0.52 22.92 16 3 O -0.92 -12.04 16.41 -57.83 -0.95 -12.99 16 4 O -0.93 -10.65 17.47 -57.83 -1.01 -11.66 16 5 C -0.61 -5.22 0.97 -90.96 -0.09 -5.31 16 6 C 0.55 6.08 6.16 -10.99 -0.07 6.01 16 7 O -0.52 -6.97 15.47 5.55 0.09 -6.88 16 8 N -0.70 -7.93 4.94 -53.01 -0.26 -8.19 16 9 C 0.11 1.37 4.35 -67.11 -0.29 1.07 16 10 C -0.14 -1.65 7.39 -25.92 -0.19 -1.84 16 11 C -0.12 -1.83 3.63 -89.81 -0.33 -2.15 16 12 C 0.16 3.27 6.10 -4.04 -0.02 3.25 16 13 N -0.73 -18.90 5.60 -59.91 -0.34 -19.23 16 14 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 15 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 16 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 17 N -0.93 -28.70 13.06 55.49 0.72 -27.98 16 18 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 21 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 22 C -0.14 -2.03 7.43 -25.92 -0.19 -2.22 16 23 C -0.10 -0.66 6.99 -25.92 -0.18 -0.84 16 24 C -0.12 -0.80 7.80 -25.92 -0.20 -1.00 16 25 C -0.10 -0.67 7.22 -25.92 -0.19 -0.86 16 26 H 0.13 1.07 7.92 -51.92 -0.41 0.66 16 27 H 0.14 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.13 0.69 8.14 -51.92 -0.42 0.27 16 29 H 0.41 4.49 7.34 -40.82 -0.30 4.19 16 30 H 0.10 1.25 7.42 -51.93 -0.39 0.86 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 1.07 8.10 -51.93 -0.42 0.65 16 33 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 34 H 0.02 0.39 7.84 -51.93 -0.41 -0.02 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.38 10.49 7.67 -40.82 -0.31 10.17 16 37 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.09 1.34 7.90 -51.93 -0.41 0.93 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.10 0.73 7.36 -51.93 -0.38 0.35 16 41 H 0.11 0.54 7.80 -51.93 -0.41 0.13 16 42 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.11 0.63 7.89 -51.93 -0.41 0.22 16 45 H 0.09 0.57 8.09 -51.93 -0.42 0.15 16 LS Contribution 379.24 15.07 5.72 5.72 Total: -1.00 -36.40 379.24 -9.72 -46.12 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -7.19 Total: 9.84 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -0.95 Total: -15.37 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 0.13 Total: -55.40 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -1.87 Total: -31.53 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Atomic # 16 Polarization: 23.44 SS G_CDS: -0.52 Total: 22.92 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.40 -9.72 -46.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674595689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.283 kcal (2) G-P(sol) polarization free energy of solvation -36.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds