Wall clock time and date at job start Tue Mar 31 2020 05:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 H 1.08995 * 115.55104 * 4.33482 * 4 3 2 6 6 C 1.53000 * 117.49678 * 218.62266 * 4 3 2 7 7 C 1.53000 * 117.49656 * 150.00076 * 4 3 2 8 8 H 1.09007 * 117.49866 * 359.97438 * 7 4 3 9 9 C 1.50694 * 117.50059 * 214.97916 * 7 4 3 10 10 O 1.21280 * 119.99717 * 0.02562 * 9 7 4 11 11 N 1.34775 * 120.00611 * 179.97438 * 9 7 4 12 12 C 1.46496 * 120.00349 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.47179 * 180.02562 * 12 11 9 14 14 N 1.46501 * 109.47281 * 180.02562 * 13 12 11 15 15 C 1.46501 * 119.99970 * 269.99866 * 14 13 12 16 16 C 1.34775 * 119.99838 * 90.00167 * 14 13 12 17 17 O 1.21280 * 120.00465 * 359.97438 * 16 14 13 18 18 C 1.50704 * 119.99475 * 180.02562 * 16 14 13 19 19 S 1.81002 * 109.46705 * 179.97438 * 18 16 14 20 20 C 1.76202 * 99.99862 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99730 * 359.97438 * 20 19 18 22 22 C 1.38797 * 120.00281 * 179.97438 * 20 19 18 23 23 N 1.31625 * 120.00265 * 180.02562 * 22 20 19 24 24 Si 1.86807 * 119.99840 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.46718 * 89.99661 * 24 22 20 26 26 H 1.48496 * 109.47202 * 210.00020 * 24 22 20 27 27 H 1.48498 * 109.46998 * 330.00157 * 24 22 20 28 28 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 30 30 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 31 31 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 32 32 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 33 33 H 1.08997 * 117.50438 * 0.02562 * 6 4 3 34 34 H 1.09003 * 117.49498 * 145.02905 * 6 4 3 35 35 H 0.97003 * 119.99468 * 0.02562 * 11 9 7 36 36 H 1.09002 * 109.47298 * 300.00259 * 12 11 9 37 37 H 1.09001 * 109.46928 * 60.00595 * 12 11 9 38 38 H 1.09006 * 109.47226 * 300.00370 * 13 12 11 39 39 H 1.09000 * 109.46919 * 59.99703 * 13 12 11 40 40 H 1.08998 * 109.47051 * 89.99438 * 15 14 13 41 41 H 1.08994 * 109.46925 * 210.00349 * 15 14 13 42 42 H 1.09006 * 109.46715 * 329.99760 * 15 14 13 43 43 H 1.08999 * 109.47197 * 299.99697 * 18 16 14 44 44 H 1.09001 * 109.47181 * 59.99675 * 18 16 14 45 45 H 0.97007 * 119.99801 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9770 0.5198 -0.0734 6 6 4.0510 2.5730 0.8478 7 6 4.0425 2.6875 -0.6779 8 1 3.3583 3.4087 -1.1251 9 6 5.3542 2.5039 -1.3967 10 8 5.8842 1.4133 -1.4221 11 7 5.9378 3.5512 -2.0124 12 6 7.2131 3.3727 -2.7107 13 6 7.6536 4.7066 -3.3171 14 7 8.9287 4.5280 -4.0159 15 6 10.1910 4.7182 -3.2970 16 6 8.9405 4.1889 -5.3203 17 8 7.8956 4.0310 -5.9154 18 6 10.2523 4.0046 -6.0390 19 16 9.9372 3.5547 -7.7636 20 6 11.5927 3.4069 -8.3486 21 1 12.4203 3.5842 -7.6777 22 6 11.8333 3.0625 -9.6715 23 7 13.0699 2.9516 -10.1083 24 14 10.4018 2.7551 -10.8316 25 1 10.0180 4.0284 -11.4924 26 1 10.8037 1.7641 -11.8620 27 1 9.2457 2.2284 -10.0626 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.3725 3.2189 1.4051 34 1 5.0054 2.3649 1.3315 35 1 5.5136 4.4233 -1.9924 36 1 7.9687 3.0277 -2.0048 37 1 7.0929 2.6347 -3.5038 38 1 6.8981 5.0520 -4.0229 39 1 7.7738 5.4443 -2.5237 40 1 10.5064 3.7708 -2.8600 41 1 10.9544 5.0707 -3.9904 42 1 10.0509 5.4547 -2.5057 43 1 10.8198 4.9346 -6.0035 44 1 10.8233 3.2119 -5.5555 45 1 13.2380 2.7113 -11.0330 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688310170.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:16 Heat of formation + Delta-G solvation = -88.571895 kcal Electronic energy + Delta-G solvation = -24755.135720 eV Core-core repulsion = 20900.334040 eV Total energy + Delta-G solvation = -3854.801680 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.41532 -39.65369 -38.53708 -36.19784 -35.43719 -34.67842 -32.44996 -31.29748 -30.81154 -28.57493 -26.70020 -25.64302 -24.72630 -23.33110 -22.78757 -22.43822 -20.62235 -19.32362 -18.13206 -17.72353 -16.95445 -16.87529 -16.49156 -15.97982 -15.75446 -15.60950 -15.45412 -14.99530 -14.86524 -14.34077 -13.98339 -13.77109 -13.37353 -13.19990 -13.13947 -13.06070 -12.81565 -12.80077 -12.58826 -12.51196 -12.39897 -11.99019 -11.67278 -11.55514 -11.40957 -11.26628 -11.01646 -11.00312 -10.62028 -10.24963 -9.87292 -9.65371 -9.56079 -9.36237 -9.01443 -8.78532 -8.51118 -6.93764 -6.29927 -4.02023 2.15787 2.41261 2.75547 2.85255 3.07772 3.31521 3.33736 3.44938 3.50247 3.59510 4.28063 4.32079 4.35169 4.51028 4.54265 4.62136 4.64425 4.74043 4.77280 4.81338 4.94723 4.98732 5.03853 5.09176 5.14745 5.21064 5.25899 5.33739 5.36172 5.46468 5.49270 5.59341 5.66612 5.68097 5.74062 5.78385 5.97541 6.05546 6.44047 6.74552 7.16091 7.29987 7.91794 7.92988 8.33210 8.40278 9.16270 10.79192 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.018010 B = 0.001907 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.317711 B =14682.478563 C =15779.879560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.357 6.357 4 C 0.054 3.946 5 H 0.126 0.874 6 C -0.154 4.154 7 C -0.195 4.195 8 H 0.131 0.869 9 C 0.545 3.455 10 O -0.539 6.539 11 N -0.721 5.721 12 C 0.102 3.898 13 C 0.109 3.891 14 N -0.621 5.621 15 C 0.078 3.922 16 C 0.532 3.468 17 O -0.514 6.514 18 C -0.121 4.121 19 S -0.143 6.143 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.402 0.598 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.664 1.945 25.537 31.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.275 6.275 4 C -0.005 4.005 5 H 0.143 0.857 6 C -0.192 4.192 7 C -0.216 4.216 8 H 0.149 0.851 9 C 0.331 3.669 10 O -0.416 6.416 11 N -0.373 5.373 12 C -0.022 4.022 13 C -0.015 4.015 14 N -0.357 5.357 15 C -0.065 4.065 16 C 0.320 3.680 17 O -0.387 6.387 18 C -0.272 4.272 19 S 0.083 5.917 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.112 4.112 23 N -0.516 5.516 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.237 0.763 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.798 1.038 24.455 31.482 hybrid contribution 0.941 0.371 -0.005 1.011 sum -18.858 1.409 24.450 30.910 Atomic orbital electron populations 1.21760 0.93399 1.02555 1.03201 1.22598 0.95627 0.83011 1.00741 1.87808 1.18390 1.27383 1.93941 1.22599 0.82170 0.94348 1.01367 0.85696 1.23446 1.03099 1.02121 0.90549 1.22670 0.97318 1.04973 0.96665 0.85126 1.19555 0.85089 0.84003 0.78270 1.90726 1.64966 1.25292 1.60569 1.45734 1.23975 1.12458 1.55098 1.21793 0.84672 0.99011 0.96767 1.21471 0.87264 0.95739 0.97043 1.47706 1.06401 1.71536 1.10080 1.21866 0.85595 1.01613 0.97468 1.20394 0.91430 0.75402 0.80787 1.90705 1.33861 1.48564 1.65602 1.23318 0.97016 1.05410 1.01427 1.84810 1.13619 1.90802 1.02447 1.22300 0.89985 1.54895 0.99713 0.89363 1.24704 0.95891 0.93419 0.97233 1.69936 1.18861 1.45935 1.16879 0.86743 0.83803 0.79516 0.81842 1.19201 1.19914 1.15927 0.90789 0.91805 0.91716 0.92733 0.92861 0.87015 0.87425 0.76340 0.91205 0.90575 0.89128 0.90045 0.92401 0.90224 0.91113 0.88382 0.88342 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.28 37.16 0.38 -0.45 16 2 C 0.06 0.39 6.53 37.16 0.24 0.63 16 3 O -0.36 -3.24 10.60 -35.23 -0.37 -3.61 16 4 C 0.05 0.47 5.96 -26.73 -0.16 0.31 16 5 H 0.13 1.16 7.45 -51.93 -0.39 0.77 16 6 C -0.15 -1.04 10.18 -26.73 -0.27 -1.32 16 7 C -0.19 -1.61 6.14 -91.77 -0.56 -2.18 16 8 H 0.13 0.90 8.14 -51.92 -0.42 0.48 16 9 C 0.54 6.02 7.61 -10.99 -0.08 5.93 16 10 O -0.54 -8.17 16.26 5.56 0.09 -8.08 16 11 N -0.72 -6.57 5.56 -60.30 -0.33 -6.90 16 12 C 0.10 1.14 6.00 -4.04 -0.02 1.11 16 13 C 0.11 1.09 5.56 -4.04 -0.02 1.07 16 14 N -0.62 -7.80 2.87 -181.57 -0.52 -8.32 16 15 C 0.08 0.71 10.29 59.85 0.62 1.32 16 16 C 0.53 9.36 7.69 -10.98 -0.08 9.28 16 17 O -0.51 -10.88 15.44 5.56 0.09 -10.80 16 18 C -0.12 -2.33 4.71 36.01 0.17 -2.16 16 19 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 20 C -0.52 -14.98 10.04 30.94 0.31 -14.66 16 21 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 22 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 23 N -0.88 -26.48 13.97 55.49 0.78 -25.71 16 24 Si 0.86 21.83 27.74 -169.99 -4.71 17.11 16 25 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.40 2.37 8.47 -40.82 -0.35 2.02 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.09 1.02 7.42 -51.93 -0.39 0.64 16 39 H 0.08 0.54 7.89 -51.93 -0.41 0.13 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.75 6.44 -51.93 -0.33 0.41 16 42 H 0.07 0.45 7.89 -51.93 -0.41 0.04 16 43 H 0.10 1.73 7.40 -51.92 -0.38 1.34 16 44 H 0.10 1.78 8.11 -51.91 -0.42 1.36 16 45 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 395.40 15.07 5.96 5.96 Total: -1.00 -36.88 395.40 -7.92 -44.80 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -7.31 Total: -0.45 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 0.42 Total: 1.62 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: -0.08 Total: -40.93 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.20 Total: -22.49 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.11 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.88 -7.92 -44.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688310170.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.771 kcal (2) G-P(sol) polarization free energy of solvation -36.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds