Wall clock time and date at job start Tue Mar 31 2020 05:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 H 1.08995 * 115.55104 * 4.33482 * 4 3 2 6 6 C 1.53000 * 117.49678 * 218.62266 * 4 3 2 7 7 C 1.53000 * 117.49656 * 150.00076 * 4 3 2 8 8 H 1.09007 * 117.49866 * 359.97438 * 7 4 3 9 9 C 1.50694 * 117.50059 * 214.97916 * 7 4 3 10 10 O 1.21280 * 119.99717 * 0.02562 * 9 7 4 11 11 N 1.34775 * 120.00611 * 179.97438 * 9 7 4 12 12 C 1.46496 * 120.00349 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.47179 * 180.02562 * 12 11 9 14 14 N 1.46501 * 109.47281 * 180.02562 * 13 12 11 15 15 C 1.46501 * 119.99970 * 269.99866 * 14 13 12 16 16 C 1.34775 * 119.99838 * 90.00167 * 14 13 12 17 17 O 1.21280 * 120.00465 * 359.97438 * 16 14 13 18 18 C 1.50704 * 119.99475 * 180.02562 * 16 14 13 19 19 S 1.81002 * 109.46705 * 179.97438 * 18 16 14 20 20 C 1.76202 * 99.99862 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99730 * 359.97438 * 20 19 18 22 22 C 1.38797 * 120.00281 * 179.97438 * 20 19 18 23 23 N 1.31625 * 120.00265 * 180.02562 * 22 20 19 24 24 Si 1.86807 * 119.99840 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.46718 * 89.99661 * 24 22 20 26 26 H 1.48496 * 109.47202 * 210.00020 * 24 22 20 27 27 H 1.48498 * 109.46998 * 330.00157 * 24 22 20 28 28 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 30 30 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 31 31 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 32 32 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 33 33 H 1.08997 * 117.50438 * 0.02562 * 6 4 3 34 34 H 1.09003 * 117.49498 * 145.02905 * 6 4 3 35 35 H 0.97003 * 119.99468 * 0.02562 * 11 9 7 36 36 H 1.09002 * 109.47298 * 300.00259 * 12 11 9 37 37 H 1.09001 * 109.46928 * 60.00595 * 12 11 9 38 38 H 1.09006 * 109.47226 * 300.00370 * 13 12 11 39 39 H 1.09000 * 109.46919 * 59.99703 * 13 12 11 40 40 H 1.08998 * 109.47051 * 89.99438 * 15 14 13 41 41 H 1.08994 * 109.46925 * 210.00349 * 15 14 13 42 42 H 1.09006 * 109.46715 * 329.99760 * 15 14 13 43 43 H 1.08999 * 109.47197 * 299.99697 * 18 16 14 44 44 H 1.09001 * 109.47181 * 59.99675 * 18 16 14 45 45 H 0.97007 * 119.99801 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9770 0.5198 -0.0734 6 6 4.0510 2.5730 0.8478 7 6 4.0425 2.6875 -0.6779 8 1 3.3583 3.4087 -1.1251 9 6 5.3542 2.5039 -1.3967 10 8 5.8842 1.4133 -1.4221 11 7 5.9378 3.5512 -2.0124 12 6 7.2131 3.3727 -2.7107 13 6 7.6536 4.7066 -3.3171 14 7 8.9287 4.5280 -4.0159 15 6 10.1910 4.7182 -3.2970 16 6 8.9405 4.1889 -5.3203 17 8 7.8956 4.0310 -5.9154 18 6 10.2523 4.0046 -6.0390 19 16 9.9372 3.5547 -7.7636 20 6 11.5927 3.4069 -8.3486 21 1 12.4203 3.5842 -7.6777 22 6 11.8333 3.0625 -9.6715 23 7 13.0699 2.9516 -10.1083 24 14 10.4018 2.7551 -10.8316 25 1 10.0180 4.0284 -11.4924 26 1 10.8037 1.7641 -11.8620 27 1 9.2457 2.2284 -10.0626 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.3725 3.2189 1.4051 34 1 5.0054 2.3649 1.3315 35 1 5.5136 4.4233 -1.9924 36 1 7.9687 3.0277 -2.0048 37 1 7.0929 2.6347 -3.5038 38 1 6.8981 5.0520 -4.0229 39 1 7.7738 5.4443 -2.5237 40 1 10.5064 3.7708 -2.8600 41 1 10.9544 5.0707 -3.9904 42 1 10.0509 5.4547 -2.5057 43 1 10.8198 4.9346 -6.0035 44 1 10.8233 3.2119 -5.5555 45 1 13.2380 2.7113 -11.0330 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688310170.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:15 Heat of formation + Delta-G solvation = -115.781725 kcal Electronic energy + Delta-G solvation = -24756.315627 eV Core-core repulsion = 20900.334040 eV Total energy + Delta-G solvation = -3855.981587 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.30094 -40.84226 -39.23835 -37.25903 -36.13717 -35.68085 -34.68487 -32.09648 -31.69331 -29.77920 -27.87517 -27.57877 -25.59494 -23.83372 -23.62919 -23.09583 -21.50835 -20.61273 -19.59114 -18.84377 -18.17125 -17.72408 -17.46669 -17.13475 -16.78219 -16.67480 -16.53019 -16.46596 -15.80314 -15.61778 -15.15182 -14.93139 -14.86651 -14.37870 -14.34050 -13.76883 -13.64987 -13.63423 -13.39425 -13.38620 -13.24788 -13.11342 -13.06811 -13.00994 -12.72163 -12.35027 -12.20170 -11.93297 -11.88566 -11.66471 -11.18411 -11.17763 -10.98794 -10.54286 -10.26515 -10.23972 -9.84485 -9.02088 -8.52830 -6.23917 0.95262 1.29548 1.33033 1.40504 1.46510 1.51564 1.77243 2.18189 2.23835 2.59740 2.68498 2.78528 2.85449 3.54151 3.61559 3.73724 3.80857 3.96743 3.98939 4.03852 4.14038 4.15183 4.25683 4.30084 4.38550 4.43553 4.44767 4.48708 4.66945 4.70926 4.77304 4.85601 4.88687 4.95812 4.98878 5.00211 5.22291 5.25401 5.49147 5.69512 6.09982 6.14557 6.14722 6.42119 6.92473 7.01967 7.12490 8.59396 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.018010 B = 0.001907 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.317711 B =14682.478563 C =15779.879560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 O -0.369 6.369 4 C 0.036 3.964 5 H 0.112 0.888 6 C -0.129 4.129 7 C -0.195 4.195 8 H 0.149 0.851 9 C 0.541 3.459 10 O -0.587 6.587 11 N -0.706 5.706 12 C 0.111 3.889 13 C 0.112 3.888 14 N -0.607 5.607 15 C 0.068 3.932 16 C 0.531 3.469 17 O -0.559 6.559 18 C -0.107 4.107 19 S -0.181 6.181 20 C -0.528 4.528 21 H 0.064 0.936 22 C 0.047 3.953 23 N -0.915 5.915 24 Si 0.913 3.087 25 H -0.261 1.261 26 H -0.259 1.259 27 H -0.240 1.240 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.132 0.868 34 H 0.112 0.888 35 H 0.421 0.579 36 H 0.073 0.927 37 H 0.031 0.969 38 H 0.079 0.921 39 H 0.132 0.868 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.110 0.890 43 H 0.117 0.883 44 H 0.110 0.890 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.934 3.415 27.746 34.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 O -0.288 6.288 4 C -0.023 4.023 5 H 0.129 0.871 6 C -0.167 4.167 7 C -0.216 4.216 8 H 0.166 0.834 9 C 0.328 3.672 10 O -0.468 6.468 11 N -0.358 5.358 12 C -0.014 4.014 13 C -0.011 4.011 14 N -0.341 5.341 15 C -0.074 4.074 16 C 0.319 3.681 17 O -0.437 6.437 18 C -0.258 4.258 19 S 0.046 5.954 20 C -0.676 4.676 21 H 0.082 0.918 22 C -0.158 4.158 23 N -0.553 5.553 24 Si 0.735 3.265 25 H -0.185 1.185 26 H -0.183 1.183 27 H -0.164 1.164 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.150 0.850 34 H 0.130 0.870 35 H 0.259 0.741 36 H 0.091 0.909 37 H 0.050 0.950 38 H 0.097 0.903 39 H 0.149 0.851 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.128 0.872 43 H 0.135 0.865 44 H 0.128 0.872 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.059 2.559 26.713 34.112 hybrid contribution 1.377 -0.061 -0.504 1.467 sum -19.682 2.498 26.209 32.872 Atomic orbital electron populations 1.21770 0.92221 1.03599 1.02982 1.22769 0.96615 0.82367 1.00960 1.87781 1.18406 1.28462 1.94123 1.22633 0.82170 0.94362 1.03088 0.87084 1.23516 1.03228 1.00548 0.89385 1.22662 0.95955 1.05281 0.97719 0.83382 1.20077 0.85725 0.83460 0.77903 1.90706 1.66411 1.27207 1.62443 1.45588 1.23260 1.13109 1.53873 1.21565 0.85655 0.98568 0.95656 1.21662 0.85715 0.96012 0.97693 1.47695 1.08824 1.69149 1.08462 1.22198 0.83753 1.03356 0.98097 1.20096 0.89838 0.75717 0.82492 1.90690 1.34763 1.51085 1.67131 1.23298 0.98784 1.06548 0.97132 1.84747 1.11532 1.91363 1.07755 1.22438 0.91075 1.54365 0.99679 0.91811 1.25532 0.98202 0.93294 0.98808 1.70010 1.20592 1.46993 1.17707 0.85891 0.80677 0.79901 0.80055 1.18521 1.18340 1.16364 0.89159 0.91510 0.92371 0.93382 0.91848 0.85016 0.86979 0.74133 0.90897 0.95009 0.90259 0.85054 0.91550 0.90465 0.87151 0.86536 0.87211 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 10.28 71.98 0.74 -0.74 16 2 C 0.05 0.66 6.53 71.98 0.47 1.13 16 3 O -0.37 -6.40 10.60 -148.98 -1.58 -7.98 16 4 C 0.04 0.61 5.96 30.59 0.18 0.79 16 5 H 0.11 2.14 7.45 -2.39 -0.02 2.12 16 6 C -0.13 -1.46 10.18 30.60 0.31 -1.15 16 7 C -0.19 -2.93 6.14 -11.54 -0.07 -3.00 16 8 H 0.15 1.69 8.14 -2.38 -0.02 1.67 16 9 C 0.54 11.53 7.61 87.66 0.67 12.20 16 10 O -0.59 -18.15 16.26 -3.03 -0.05 -18.20 16 11 N -0.71 -11.67 5.56 -463.07 -2.57 -14.25 16 12 C 0.11 2.33 6.00 86.38 0.52 2.85 16 13 C 0.11 1.94 5.56 86.38 0.48 2.42 16 14 N -0.61 -13.81 2.87 -846.74 -2.43 -16.24 16 15 C 0.07 0.99 10.29 127.77 1.31 2.30 16 16 C 0.53 18.24 7.69 87.66 0.67 18.91 16 17 O -0.56 -23.79 15.44 -3.03 -0.05 -23.84 16 18 C -0.11 -4.03 4.71 71.24 0.34 -3.70 16 19 S -0.18 -9.21 18.55 -56.49 -1.05 -10.26 16 20 C -0.53 -30.83 10.04 67.95 0.68 -30.14 16 21 H 0.06 3.90 8.03 -2.91 -0.02 3.88 16 22 C 0.05 2.78 5.50 84.86 0.47 3.25 16 23 N -0.92 -55.76 13.97 21.65 0.30 -55.46 16 24 Si 0.91 45.37 27.74 68.60 1.90 47.28 16 25 H -0.26 -12.57 7.11 99.48 0.71 -11.87 16 26 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 27 H -0.24 -12.00 6.74 99.48 0.67 -11.33 16 28 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.42 3.77 8.47 -92.71 -0.79 2.98 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 1.64 7.42 -2.38 -0.02 1.62 16 39 H 0.13 1.06 7.89 -2.39 -0.02 1.04 16 40 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.08 1.21 6.44 -2.39 -0.02 1.20 16 42 H 0.11 0.82 7.89 -2.38 -0.02 0.80 16 43 H 0.12 3.96 7.40 -2.39 -0.02 3.94 16 44 H 0.11 3.88 8.11 -2.39 -0.02 3.86 16 45 H 0.28 15.61 8.31 -92.70 -0.77 14.84 16 Total: -1.00 -83.23 395.40 1.41 -81.82 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.17 Total: 12.00 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 6.77 Total: 5.12 kcal Atomic # 7 Polarization: -81.25 SS G_CDS: -4.70 Total: -85.95 kcal Atomic # 8 Polarization: -48.34 SS G_CDS: -1.67 Total: -50.01 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.90 Total: 47.28 kcal Atomic # 16 Polarization: -9.21 SS G_CDS: -1.05 Total: -10.26 kcal Total: -83.23 1.41 -81.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688310170.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.964 kcal (2) G-P(sol) polarization free energy of solvation -83.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds