Wall clock time and date at job start Tue Mar 31 2020 05:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42898 * 109.47183 * 2 1 4 4 C 1.42899 * 114.00143 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47352 * 29.99973 * 4 3 2 6 6 C 1.53007 * 109.47288 * 270.00184 * 4 3 2 7 7 C 1.50706 * 109.47243 * 150.00002 * 4 3 2 8 8 O 1.21276 * 119.99664 * 4.99951 * 7 4 3 9 9 N 1.34774 * 119.99776 * 185.00327 * 7 4 3 10 10 C 1.46500 * 119.99653 * 180.02562 * 9 7 4 11 11 C 1.53005 * 109.47197 * 179.97438 * 10 9 7 12 12 C 1.53495 * 114.20732 * 174.99478 * 11 10 9 13 13 N 1.47065 * 87.98362 * 139.85553 * 12 11 10 14 14 C 1.34775 * 136.05752 * 152.84847 * 13 12 11 15 15 O 1.21276 * 119.99984 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00022 * 180.02562 * 14 13 12 17 17 S 1.80998 * 109.47116 * 179.97438 * 16 14 13 18 18 C 1.76199 * 100.00013 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00250 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00102 * 179.72368 * 18 17 16 21 21 N 1.31626 * 120.00155 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00292 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47145 * 60.00107 * 22 20 18 24 24 H 1.48496 * 109.47291 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47229 * 300.00299 * 22 20 18 26 26 C 1.47067 * 87.88381 * 333.10023 * 13 12 11 27 27 H 1.09004 * 109.47119 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46875 * 299.99799 * 1 2 3 29 29 H 1.09000 * 109.47609 * 59.99852 * 1 2 3 30 30 H 1.09005 * 109.46924 * 239.99830 * 2 1 3 31 31 H 1.09000 * 109.47609 * 120.00148 * 2 1 3 32 32 H 1.09004 * 109.46745 * 179.97438 * 6 4 3 33 33 H 1.08998 * 109.46779 * 299.99608 * 6 4 3 34 34 H 1.08999 * 109.46889 * 60.00183 * 6 4 3 35 35 H 0.96998 * 120.00401 * 359.97438 * 9 7 4 36 36 H 1.09000 * 109.47780 * 59.99589 * 10 9 7 37 37 H 1.09004 * 109.47249 * 299.99421 * 10 9 7 38 38 H 1.09004 * 113.27740 * 41.93646 * 11 10 9 39 39 H 1.09007 * 113.46442 * 25.07681 * 12 11 10 40 40 H 1.08997 * 113.52442 * 254.64770 * 12 11 10 41 41 H 1.09001 * 109.47434 * 59.99478 * 16 14 13 42 42 H 1.08999 * 109.47072 * 299.99957 * 16 14 13 43 43 H 0.97004 * 120.00604 * 179.97438 * 21 20 18 44 44 H 1.09000 * 113.46609 * 141.67771 * 26 13 12 45 45 H 1.08993 * 113.47087 * 272.11805 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8631 0.6017 -0.5147 6 6 3.9399 1.5001 1.4418 7 6 3.8342 2.7265 -0.7110 8 8 2.9855 3.5049 -1.0915 9 7 5.1379 2.9940 -0.9235 10 6 5.5300 4.2253 -1.6136 11 6 7.0549 4.2849 -1.7236 12 6 7.5812 5.4753 -2.5374 13 7 8.6544 5.6147 -1.5417 14 6 9.9152 6.0909 -1.5341 15 8 10.3976 6.5463 -2.5494 16 6 10.7260 6.0565 -0.2643 17 16 12.3642 6.7608 -0.5752 18 6 13.0758 6.5998 1.0286 19 1 12.5012 6.1656 1.8333 20 6 14.3771 7.0255 1.2563 21 7 15.0795 7.5498 0.2743 22 14 15.1314 6.8555 2.9568 23 1 15.1484 5.4236 3.3500 24 1 16.5204 7.3803 2.9369 25 1 14.3249 7.6280 3.9356 26 6 7.7487 5.0001 -0.5595 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 5.0266 1.5858 1.4412 33 1 3.5077 2.3586 1.9559 34 1 3.6482 0.5841 1.9555 35 1 5.8166 2.3716 -0.6189 36 1 5.1728 5.0873 -1.0501 37 1 5.0926 4.2374 -2.6120 38 1 7.5054 3.3283 -1.9886 39 1 6.8962 6.3230 -2.5591 40 1 7.9415 5.1994 -3.5284 41 1 10.8321 5.0249 0.0713 42 1 10.2200 6.6388 0.5057 43 1 15.9889 7.8476 0.4335 44 1 8.2513 4.3199 0.1282 45 1 7.1090 5.7198 -0.0490 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688649933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:27 Heat of formation + Delta-G solvation = -83.918191 kcal Electronic energy + Delta-G solvation = -24836.271189 eV Core-core repulsion = 20981.671309 eV Total energy + Delta-G solvation = -3854.599881 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.74080 -40.07366 -38.24202 -37.63296 -35.02715 -32.99186 -32.46037 -31.20558 -30.46292 -28.92327 -26.35406 -26.07411 -25.44393 -24.40349 -23.12976 -21.39699 -20.67118 -19.10191 -17.92877 -17.65766 -17.53969 -16.72558 -16.44295 -16.07896 -15.74766 -15.68744 -15.17219 -14.83977 -14.82929 -14.23813 -13.94438 -13.85777 -13.67012 -13.36211 -13.15058 -12.97531 -12.83600 -12.73783 -12.53293 -12.47160 -12.28264 -11.98638 -11.85611 -11.66102 -11.56019 -11.07992 -11.06358 -10.90882 -10.79842 -10.40552 -9.88473 -9.85963 -9.52202 -9.42782 -9.08975 -8.67523 -8.28176 -6.54221 -6.24332 -3.95776 2.22405 2.36723 2.70741 3.00172 3.20987 3.21782 3.26665 3.38171 3.51784 3.90843 4.17261 4.19601 4.34848 4.42926 4.44456 4.57201 4.59994 4.72342 4.74592 4.86097 4.93188 4.95063 5.10686 5.15484 5.21554 5.24288 5.25715 5.31289 5.38510 5.43010 5.45628 5.55103 5.58356 5.67918 5.77775 5.86249 5.95911 5.99897 6.09375 6.57781 7.05430 7.56125 7.78915 7.82229 8.31894 8.48431 9.20584 10.83034 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.019919 B = 0.001807 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.357981 B =15488.519408 C =16700.290488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.358 6.358 4 C 0.071 3.929 5 H 0.086 0.914 6 C -0.171 4.171 7 C 0.514 3.486 8 O -0.517 6.517 9 N -0.728 5.728 10 C 0.134 3.866 11 C -0.142 4.142 12 C 0.116 3.884 13 N -0.654 5.654 14 C 0.563 3.437 15 O -0.512 6.512 16 C -0.144 4.144 17 S -0.060 6.060 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.282 1.282 25 H -0.274 1.274 26 C 0.106 3.894 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.402 0.598 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.112 0.888 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.080 0.920 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.071 -17.199 0.771 31.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.277 6.277 4 C 0.010 3.990 5 H 0.104 0.896 6 C -0.229 4.229 7 C 0.299 3.701 8 O -0.391 6.391 9 N -0.382 5.382 10 C 0.010 3.990 11 C -0.161 4.161 12 C -0.008 4.008 13 N -0.393 5.393 14 C 0.352 3.648 15 O -0.386 6.386 16 C -0.295 4.295 17 S 0.167 5.833 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.018 4.018 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.237 0.763 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.130 0.870 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.099 0.901 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -25.675 -15.588 -1.083 30.056 hybrid contribution 0.476 -1.172 2.501 2.802 sum -25.199 -16.760 1.417 30.296 Atomic orbital electron populations 1.21732 0.93319 1.02310 1.03501 1.22608 0.96078 0.83377 1.00141 1.88066 1.18211 1.26462 1.94934 1.21875 0.84000 0.96343 0.96826 0.89597 1.22246 1.01760 1.03991 0.94907 1.20392 0.82501 0.87755 0.79500 1.90745 1.50110 1.48689 1.49587 1.45912 1.07154 1.24400 1.60729 1.21268 0.92728 0.86918 0.98112 1.23239 0.94165 0.99969 0.98763 1.22793 0.87529 0.95633 0.94827 1.49586 1.11359 1.64027 1.14313 1.19945 0.78850 0.75565 0.90411 1.90722 1.69071 1.44028 1.34780 1.23468 1.03459 1.05454 0.97093 1.85419 1.02125 1.79290 1.16461 1.22812 1.01662 1.48059 0.95989 0.90967 1.24989 0.95936 0.94478 0.98098 1.70004 1.10378 1.38294 1.31538 0.86218 0.78145 0.78623 0.82479 1.19939 1.20760 1.19921 1.23013 0.90324 0.95288 0.93157 0.90947 0.91689 0.91616 0.93193 0.93106 0.90744 0.90914 0.91131 0.76331 0.90538 0.90477 0.87008 0.89663 0.90019 0.89330 0.89303 0.92076 0.90140 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 10.28 37.16 0.38 -0.40 16 2 C 0.05 0.31 6.47 37.16 0.24 0.55 16 3 O -0.36 -3.25 9.53 -55.09 -0.52 -3.77 16 4 C 0.07 0.47 3.13 -27.88 -0.09 0.38 16 5 H 0.09 0.34 7.79 -51.93 -0.40 -0.06 16 6 C -0.17 -0.81 9.48 37.16 0.35 -0.46 16 7 C 0.51 4.59 7.18 -10.98 -0.08 4.51 16 8 O -0.52 -7.12 16.51 -14.30 -0.24 -7.36 16 9 N -0.73 -4.33 5.52 -60.29 -0.33 -4.67 16 10 C 0.13 0.88 5.60 -4.04 -0.02 0.86 16 11 C -0.14 -0.96 4.08 -90.24 -0.37 -1.32 16 12 C 0.12 1.15 8.20 -8.51 -0.07 1.08 16 13 N -0.65 -8.92 3.69 -185.41 -0.68 -9.60 16 14 C 0.56 10.81 8.10 -10.99 -0.09 10.72 16 15 O -0.51 -12.01 16.64 5.56 0.09 -11.91 16 16 C -0.14 -2.94 5.98 36.00 0.22 -2.72 16 17 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 18 C -0.54 -15.22 9.50 30.94 0.29 -14.93 16 19 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.02 13.22 55.49 0.73 -25.29 16 22 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 C 0.11 0.92 7.99 -8.65 -0.07 0.86 16 27 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.23 8.08 -51.93 -0.42 -0.19 16 31 H 0.05 0.21 7.87 -51.93 -0.41 -0.20 16 32 H 0.07 0.22 7.92 -51.93 -0.41 -0.19 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.26 7.87 -51.93 -0.41 -0.14 16 35 H 0.40 1.28 8.26 -40.82 -0.34 0.95 16 36 H 0.08 0.56 7.83 -51.93 -0.41 0.16 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.75 8.11 -51.93 -0.42 0.33 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.09 1.66 8.14 -51.91 -0.42 1.23 16 42 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 43 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 0.67 7.89 -51.93 -0.41 0.26 16 LS Contribution 397.16 15.07 5.99 5.99 Total: -1.00 -38.77 397.16 -9.00 -47.77 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -7.40 Total: -4.63 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: 0.60 Total: 1.13 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: -0.28 Total: -39.56 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.67 Total: -23.04 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -38.77 -9.00 -47.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688649933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.152 kcal (2) G-P(sol) polarization free energy of solvation -38.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds