Wall clock time and date at job start Tue Mar 31 2020 05:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 120.00363 * 2 1 4 4 C 1.52995 * 109.47331 * 95.14757 * 3 2 1 5 5 H 1.08999 * 112.77662 * 43.97842 * 4 3 2 6 6 C 1.53235 * 113.38510 * 273.27344 * 4 3 2 7 7 C 1.53489 * 83.43288 * 219.29178 * 6 4 3 8 8 N 1.47068 * 87.98682 * 25.89719 * 7 6 4 9 9 C 1.36935 * 136.06249 * 152.84434 * 8 7 6 10 10 H 1.07998 * 120.00367 * 175.16445 * 9 8 7 11 11 C 1.38811 * 119.99783 * 355.16108 * 9 8 7 12 12 N 1.31626 * 120.00079 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00027 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46912 * 60.00153 * 13 11 9 15 15 H 1.48500 * 109.47229 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47055 * 300.00019 * 13 11 9 17 17 C 1.34780 * 119.99796 * 179.97438 * 2 1 3 18 18 O 1.21285 * 120.00015 * 174.97818 * 17 2 1 19 19 C 1.50703 * 119.99949 * 354.98436 * 17 2 1 20 20 C 1.53002 * 109.47058 * 179.97438 * 19 17 2 21 21 H 1.09003 * 109.64337 * 305.69993 * 20 19 17 22 22 C 1.53874 * 109.64729 * 66.12932 * 20 19 17 23 23 C 1.54973 * 106.66183 * 167.15268 * 22 20 19 24 24 S 1.83286 * 102.47751 * 317.38349 * 23 22 20 25 25 O 1.42103 * 109.35267 * 269.89978 * 24 23 22 26 26 O 1.42105 * 109.47731 * 136.73351 * 24 23 22 27 27 C 1.54160 * 109.64521 * 185.27303 * 20 19 17 28 28 H 1.08993 * 109.47110 * 89.99867 * 1 2 3 29 29 H 1.09000 * 109.46777 * 210.00200 * 1 2 3 30 30 H 1.08997 * 109.46809 * 330.00036 * 1 2 3 31 31 H 1.09007 * 109.46717 * 335.14466 * 3 2 1 32 32 H 1.09004 * 109.46908 * 215.15347 * 3 2 1 33 33 H 1.09003 * 114.33023 * 105.65452 * 6 4 3 34 34 H 1.09005 * 114.19810 * 332.91928 * 6 4 3 35 35 H 1.09002 * 113.46869 * 271.12216 * 7 6 4 36 36 H 1.08997 * 113.47392 * 140.67684 * 7 6 4 37 37 H 0.97000 * 120.00139 * 179.97438 * 12 11 9 38 38 H 1.08994 * 109.47089 * 299.99649 * 19 17 2 39 39 H 1.09002 * 109.47266 * 59.99648 * 19 17 2 40 40 H 1.09006 * 110.02563 * 286.32558 * 22 20 19 41 41 H 1.08997 * 110.02988 * 47.74083 * 22 20 19 42 42 H 1.09000 * 110.76106 * 199.17617 * 23 22 20 43 43 H 1.09001 * 110.90612 * 75.65523 * 23 22 20 44 44 H 1.08996 * 110.31835 * 331.13666 * 27 20 19 45 45 H 1.08998 * 110.32377 * 93.23722 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.5647 1.6456 1.4366 5 1 2.9457 0.8008 2.0104 6 6 1.4638 2.4281 2.1604 7 6 2.6470 3.2236 2.7286 8 7 3.4100 2.8455 1.5295 9 6 4.4471 3.3789 0.8118 10 1 4.8718 2.8280 -0.0143 11 6 4.9524 4.6279 1.1460 12 7 4.4351 5.2992 2.1531 13 14 6.3676 5.3553 0.1674 14 1 5.9633 5.5005 -1.2541 15 1 6.7192 6.6875 0.7212 16 1 7.5457 4.4557 0.2576 17 6 2.1389 -1.1673 0.0005 18 8 3.3483 -1.1694 -0.0914 19 6 1.3897 -2.4698 0.1152 20 6 2.3829 -3.6333 0.0906 21 1 3.0107 -3.5605 -0.7974 22 6 3.2634 -3.5886 1.3517 23 6 4.0014 -4.9493 1.4269 24 16 2.6792 -6.1415 0.9915 25 8 2.0113 -6.5569 2.1750 26 8 3.1947 -7.1131 0.0917 27 6 1.6150 -4.9700 0.0743 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.5717 2.0496 -0.4320 32 1 3.1070 1.1631 -0.5917 33 1 0.9161 1.8491 2.9040 34 1 0.8153 3.0026 1.4988 35 1 3.0503 2.8034 3.6500 36 1 2.4555 4.2942 2.8014 37 1 4.7884 6.1717 2.3869 38 1 0.8324 -2.4871 1.0517 39 1 0.6974 -2.5657 -0.7213 40 1 3.9874 -2.7775 1.2730 41 1 2.6419 -3.4501 2.2363 42 1 4.3713 -5.1330 2.4356 43 1 4.8143 -4.9914 0.7019 44 1 0.6534 -4.8602 0.5755 45 1 1.4701 -5.3109 -0.9508 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688878432.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:24 Heat of formation + Delta-G solvation = -44.509359 kcal Electronic energy + Delta-G solvation = -26838.918929 eV Core-core repulsion = 22986.027944 eV Total energy + Delta-G solvation = -3852.890985 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.16736 -38.24693 -37.32233 -36.92968 -36.25377 -35.23812 -32.21937 -31.43763 -29.45501 -27.97973 -27.90543 -26.22805 -24.46239 -23.46569 -22.43466 -20.99256 -19.33756 -19.18861 -18.94606 -17.46691 -16.90759 -16.77871 -16.59508 -16.00433 -15.89447 -15.58023 -14.98181 -14.50089 -14.44075 -14.11697 -13.95848 -13.72979 -13.21682 -13.18285 -12.72453 -12.70736 -12.58364 -12.44939 -12.32184 -12.29888 -12.08432 -11.88280 -11.66588 -11.53833 -11.20540 -11.11126 -10.90651 -10.87031 -10.76229 -10.60013 -10.47084 -9.88060 -9.82242 -9.71307 -9.46395 -8.78335 -8.34531 -6.87787 -5.75630 -3.09419 -0.24696 2.21290 2.67540 3.05698 3.29786 3.40189 3.44496 3.45617 3.67057 3.99927 4.23531 4.27509 4.44046 4.46496 4.57431 4.66811 4.90257 4.97484 5.07012 5.10882 5.18894 5.29474 5.30167 5.40266 5.44645 5.46449 5.50794 5.63252 5.75663 5.77626 5.94326 5.94607 6.13260 6.26264 6.41396 6.48976 6.65744 6.82174 7.22321 7.41446 7.49770 7.58157 7.99851 8.26099 9.04666 9.71301 10.64495 11.40862 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.018947 B = 0.002657 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.415472 B =10533.829409 C =11117.524078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.610 5.610 3 C 0.115 3.885 4 C 0.136 3.864 5 H 0.042 0.958 6 C -0.167 4.167 7 C 0.148 3.852 8 N -0.600 5.600 9 C -0.216 4.216 10 H 0.079 0.921 11 C -0.007 4.007 12 N -0.920 5.920 13 Si 0.912 3.088 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.285 1.285 17 C 0.506 3.494 18 O -0.533 6.533 19 C -0.132 4.132 20 C -0.066 4.066 21 H 0.103 0.897 22 C -0.124 4.124 23 C -0.580 4.580 24 S 2.384 3.616 25 O -0.940 6.940 26 O -0.944 6.944 27 C -0.592 4.592 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.021 0.979 36 H 0.076 0.924 37 H 0.253 0.747 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.119 0.881 41 H 0.084 0.916 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.441 -18.475 -3.385 21.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.344 5.344 3 C -0.008 4.008 4 C 0.028 3.972 5 H 0.060 0.940 6 C -0.205 4.205 7 C 0.023 3.977 8 N -0.326 5.326 9 C -0.344 4.344 10 H 0.097 0.903 11 C -0.203 4.203 12 N -0.567 5.567 13 Si 0.742 3.258 14 H -0.210 1.210 15 H -0.216 1.216 16 H -0.212 1.212 17 C 0.294 3.706 18 O -0.409 6.409 19 C -0.173 4.173 20 C -0.086 4.086 21 H 0.121 0.879 22 C -0.163 4.163 23 C -0.711 4.711 24 S 2.568 3.432 25 O -0.938 6.938 26 O -0.941 6.941 27 C -0.721 4.721 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.038 0.962 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.137 0.863 41 H 0.103 0.897 42 H 0.156 0.844 43 H 0.156 0.844 44 H 0.157 0.843 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.642 -19.179 -3.326 22.184 hybrid contribution 0.787 1.288 -0.553 1.607 sum -9.855 -17.891 -3.878 20.790 Atomic orbital electron populations 1.21829 0.79919 1.03412 1.01558 1.47921 1.06830 1.06628 1.72999 1.21905 0.96902 0.82514 0.99450 1.22343 0.90338 0.91514 0.93025 0.94036 1.23683 0.96883 0.99907 1.00071 1.22088 0.86661 0.99773 0.89222 1.45603 1.38140 1.20796 1.28013 1.18870 1.07495 0.98675 1.09318 0.90299 1.24782 1.00021 0.96934 0.98609 1.69817 1.43578 1.13899 1.29446 0.86205 0.82036 0.78264 0.79294 1.21037 1.21574 1.21159 1.20516 0.88110 0.85225 0.76790 1.90714 1.14026 1.87128 1.49080 1.21775 0.98777 0.91847 1.04871 1.21322 0.95547 0.90779 1.00962 0.87917 1.22442 0.99530 0.96811 0.97471 1.30561 1.15650 1.12516 1.12326 1.09181 0.79431 0.78011 0.76531 1.93618 1.73329 1.80595 1.46215 1.93608 1.78709 1.56642 1.65125 1.30621 1.13959 1.12311 1.15244 0.92777 0.91311 0.90495 0.90335 0.90124 0.92930 0.90611 0.96171 0.90560 0.93656 0.88244 0.88310 0.86271 0.89738 0.84450 0.84354 0.84327 0.84235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.63 10.24 59.85 0.61 1.24 16 2 N -0.61 -7.78 2.88 -181.57 -0.52 -8.31 16 3 C 0.12 1.97 5.34 -4.05 -0.02 1.95 16 4 C 0.14 2.71 4.27 -72.53 -0.31 2.39 16 5 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 6 C -0.17 -2.98 8.00 -26.36 -0.21 -3.19 16 7 C 0.15 3.45 7.52 -8.51 -0.06 3.39 16 8 N -0.60 -15.20 3.65 -177.17 -0.65 -15.85 16 9 C -0.22 -6.05 10.55 -15.06 -0.16 -6.21 16 10 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 11 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 12 N -0.92 -27.26 11.43 55.49 0.63 -26.63 16 13 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 15 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 17 C 0.51 6.46 7.39 -10.98 -0.08 6.38 16 18 O -0.53 -8.98 13.79 5.55 0.08 -8.91 16 19 C -0.13 -1.01 3.49 -27.88 -0.10 -1.10 16 20 C -0.07 -0.50 2.24 -89.56 -0.20 -0.70 16 21 H 0.10 0.82 7.94 -51.93 -0.41 0.41 16 22 C -0.12 -1.05 5.32 -25.23 -0.13 -1.19 16 23 C -0.58 -4.06 7.31 38.20 0.28 -3.78 16 24 S 2.38 18.59 6.10 -107.50 -0.66 17.93 16 25 O -0.94 -10.55 18.15 -57.73 -1.05 -11.59 16 26 O -0.94 -10.76 18.15 -57.73 -1.05 -11.81 16 27 C -0.59 -3.13 6.75 37.76 0.25 -2.87 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.39 6.44 -51.93 -0.33 0.05 16 30 H 0.08 0.64 8.07 -51.93 -0.42 0.23 16 31 H 0.08 1.29 7.75 -51.93 -0.40 0.89 16 32 H 0.08 1.62 7.52 -51.93 -0.39 1.23 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.29 7.93 -51.93 -0.41 0.88 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 1.97 6.93 -51.93 -0.36 1.61 16 37 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.10 0.57 7.54 -51.93 -0.39 0.18 16 39 H 0.10 0.53 8.05 -51.93 -0.42 0.11 16 40 H 0.12 1.35 6.48 -51.93 -0.34 1.01 16 41 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 42 H 0.14 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.14 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.14 0.49 7.89 -51.93 -0.41 0.08 16 45 H 0.14 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 372.68 15.07 5.62 5.62 Total: -1.00 -38.46 372.68 -10.06 -48.51 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -7.21 Total: -2.23 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -0.23 Total: -3.98 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: -0.54 Total: -50.79 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -2.02 Total: -32.31 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Atomic # 16 Polarization: 18.59 SS G_CDS: -0.66 Total: 17.93 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -38.46 -10.06 -48.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688878432.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.002 kcal (2) G-P(sol) polarization free energy of solvation -38.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds