Wall clock time and date at job start Tue Mar 31 2020 05:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 119.99891 * 2 1 4 4 C 1.53004 * 109.47290 * 274.46854 * 3 2 1 5 5 H 1.09005 * 112.73619 * 316.92736 * 4 3 2 6 6 C 1.53491 * 113.52172 * 87.71891 * 4 3 2 7 7 C 1.53231 * 83.42891 * 140.68825 * 6 4 3 8 8 N 1.47064 * 88.08566 * 334.10363 * 7 6 4 9 9 C 1.36942 * 136.06208 * 207.20615 * 8 7 6 10 10 H 1.07990 * 120.00141 * 156.33176 * 9 8 7 11 11 C 1.38817 * 119.99461 * 336.32470 * 9 8 7 12 12 N 1.31611 * 120.00067 * 2.42450 * 11 9 8 13 13 Si 1.86795 * 119.99742 * 182.42739 * 11 9 8 14 14 H 1.48494 * 109.47269 * 180.02562 * 13 11 9 15 15 H 1.48499 * 109.47070 * 299.99887 * 13 11 9 16 16 H 1.48502 * 109.47691 * 59.99862 * 13 11 9 17 17 C 1.34776 * 119.99993 * 179.97438 * 2 1 3 18 18 O 1.21288 * 120.00142 * 184.72282 * 17 2 1 19 19 C 1.50701 * 120.00169 * 4.72589 * 17 2 1 20 20 C 1.53001 * 109.46995 * 179.97438 * 19 17 2 21 21 H 1.08999 * 110.01182 * 53.62266 * 20 19 17 22 22 C 1.53872 * 110.03101 * 292.19031 * 20 19 17 23 23 C 1.54166 * 108.70934 * 193.52988 * 22 20 19 24 24 S 1.82921 * 105.08097 * 27.90900 * 23 22 20 25 25 O 1.42100 * 109.35241 * 244.47818 * 24 23 22 26 26 O 1.42100 * 109.47561 * 111.31339 * 24 23 22 27 27 C 1.55051 * 110.02410 * 175.00080 * 20 19 17 28 28 H 1.08994 * 109.47213 * 90.00293 * 1 2 3 29 29 H 1.09007 * 109.47005 * 209.99882 * 1 2 3 30 30 H 1.09001 * 109.47563 * 329.99583 * 1 2 3 31 31 H 1.09000 * 109.46777 * 154.46801 * 3 2 1 32 32 H 1.09004 * 109.46995 * 34.47068 * 3 2 1 33 33 H 1.08999 * 114.21093 * 254.44999 * 6 4 3 34 34 H 1.09007 * 114.20175 * 27.07521 * 6 4 3 35 35 H 1.09001 * 113.38621 * 219.29811 * 7 6 4 36 36 H 1.09001 * 113.47277 * 88.93273 * 7 6 4 37 37 H 0.97002 * 120.00576 * 353.99363 * 12 11 9 38 38 H 1.09000 * 109.47114 * 299.99545 * 19 17 2 39 39 H 1.08998 * 109.47020 * 59.99935 * 19 17 2 40 40 H 1.09000 * 109.64650 * 313.38235 * 22 20 19 41 41 H 1.09000 * 109.64970 * 73.67554 * 22 20 19 42 42 H 1.08998 * 110.31712 * 269.00883 * 23 22 20 43 43 H 1.09001 * 110.31910 * 146.80951 * 23 22 20 44 44 H 1.09000 * 110.79198 * 279.99287 * 27 20 19 45 45 H 1.08997 * 110.79074 * 43.45767 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3551 1.7666 -1.4381 5 1 2.6286 0.9714 -2.1317 6 6 1.1764 2.6220 -1.9230 7 6 2.2799 3.4500 -2.5898 8 7 3.2033 2.9624 -1.5542 9 6 4.3465 3.4222 -0.9566 10 1 4.6241 3.0656 0.0241 11 6 5.1484 4.3467 -1.6118 12 7 4.7857 4.8172 -2.7862 13 14 6.7424 4.9228 -0.8265 14 1 7.4087 5.9033 -1.7208 15 1 6.4468 5.5657 0.4791 16 1 7.6385 3.7581 -0.6130 17 6 2.1389 -1.1672 0.0005 18 8 3.3486 -1.1690 0.0870 19 6 1.3892 -2.4702 -0.1064 20 6 2.3828 -3.6335 -0.0835 21 1 3.0264 -3.5571 0.7928 22 6 3.2334 -3.6254 -1.3657 23 6 3.9715 -4.9742 -1.4779 24 16 2.9048 -6.1748 -0.6022 25 8 3.5921 -6.6711 0.5382 26 8 2.3434 -7.0823 -1.5406 27 6 1.6197 -4.9831 -0.0659 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3634 0.8899 0.5139 31 1 3.1822 1.1197 0.4429 32 1 1.6453 2.0070 0.5817 33 1 0.5125 2.1131 -2.6217 34 1 0.6456 3.1438 -1.1266 35 1 2.1030 4.5245 -2.5423 36 1 2.5332 3.1079 -3.5932 37 1 4.0050 4.4551 -3.2338 38 1 0.7008 -2.5633 0.7335 39 1 0.8278 -2.4907 -1.0404 40 1 2.5877 -3.4878 -2.2330 41 1 3.9590 -2.8134 -1.3191 42 1 4.9473 -4.9129 -0.9960 43 1 4.0824 -5.2591 -2.5242 44 1 1.2706 -5.2172 0.9398 45 1 0.7887 -4.9669 -0.7711 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688878433.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:27 Heat of formation + Delta-G solvation = -47.099008 kcal Electronic energy + Delta-G solvation = -26830.256997 eV Core-core repulsion = 22977.253716 eV Total energy + Delta-G solvation = -3853.003281 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -40.19546 -38.45849 -37.33607 -36.98492 -36.26785 -35.31244 -32.44965 -31.47879 -29.49425 -28.05779 -27.62401 -26.34324 -24.54418 -23.42412 -22.58472 -21.03225 -19.39311 -19.26780 -18.97726 -17.52736 -17.31919 -16.90181 -16.77228 -16.02894 -15.92415 -15.55884 -14.83828 -14.60016 -14.34127 -14.10710 -13.90386 -13.78795 -13.43533 -13.27578 -13.13530 -12.72901 -12.62054 -12.45006 -12.39617 -12.31951 -12.25613 -12.04668 -11.72723 -11.60112 -11.18346 -11.12202 -10.95057 -10.82023 -10.64883 -10.61387 -10.54835 -10.03593 -9.85182 -9.63443 -9.17333 -8.76259 -8.42147 -6.97607 -6.07166 -3.26686 -0.26227 2.19857 2.63309 3.00583 3.27981 3.47263 3.51597 3.66758 3.68487 3.93344 4.20624 4.26172 4.47334 4.51763 4.56258 4.61816 4.84301 4.95086 4.96997 5.03820 5.12670 5.24331 5.27141 5.29907 5.36769 5.42632 5.45408 5.56032 5.69067 5.74480 5.81516 5.91250 5.98326 6.13868 6.29016 6.35311 6.52312 6.65909 6.72323 7.12400 7.40391 7.47712 8.21615 8.32182 8.90035 9.76147 10.52127 11.29305 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.016786 B = 0.002749 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.674899 B =10183.366568 C =11073.861141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.611 5.611 3 C 0.115 3.885 4 C 0.132 3.868 5 H 0.040 0.960 6 C -0.160 4.160 7 C 0.129 3.871 8 N -0.606 5.606 9 C -0.312 4.312 10 H 0.070 0.930 11 C -0.030 4.030 12 N -0.936 5.936 13 Si 1.080 2.920 14 H -0.284 1.284 15 H -0.292 1.292 16 H -0.292 1.292 17 C 0.506 3.494 18 O -0.532 6.532 19 C -0.126 4.126 20 C -0.073 4.073 21 H 0.105 0.895 22 C -0.117 4.117 23 C -0.586 4.586 24 S 2.385 3.615 25 O -0.939 6.939 26 O -0.944 6.944 27 C -0.587 4.587 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.033 0.967 37 H 0.268 0.732 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.112 0.888 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.626 -17.811 4.566 22.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.344 5.344 3 C -0.008 4.008 4 C 0.024 3.976 5 H 0.058 0.942 6 C -0.198 4.198 7 C 0.003 3.997 8 N -0.334 5.334 9 C -0.440 4.440 10 H 0.088 0.912 11 C -0.231 4.231 12 N -0.579 5.579 13 Si 0.909 3.091 14 H -0.209 1.209 15 H -0.219 1.219 16 H -0.219 1.219 17 C 0.293 3.707 18 O -0.408 6.408 19 C -0.167 4.167 20 C -0.093 4.093 21 H 0.123 0.877 22 C -0.156 4.156 23 C -0.716 4.716 24 S 2.570 3.430 25 O -0.936 6.936 26 O -0.941 6.941 27 C -0.717 4.717 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.051 0.949 37 H 0.081 0.919 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.100 0.900 41 H 0.131 0.869 42 H 0.156 0.844 43 H 0.156 0.844 44 H 0.157 0.843 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.357 -17.647 4.710 20.997 hybrid contribution -1.464 -0.240 -0.137 1.490 sum -11.822 -17.887 4.573 21.923 Atomic orbital electron populations 1.21803 0.79869 1.02863 1.01956 1.47880 1.06857 1.06586 1.73101 1.21844 0.97704 0.82404 0.98862 1.22423 0.90217 0.91346 0.93624 0.94237 1.23633 0.96128 0.99651 1.00435 1.22119 0.87312 0.97593 0.92696 1.45697 1.28024 1.15561 1.44109 1.19717 0.98336 1.26678 0.99264 0.91185 1.26059 1.02027 0.98269 0.96729 1.70792 1.29286 1.42216 1.15573 0.83287 0.75034 0.76086 0.74683 1.20914 1.21891 1.21890 1.20547 0.88141 0.85278 0.76706 1.90729 1.14010 1.87106 1.48993 1.21677 0.98583 0.91505 1.04953 1.21618 0.95813 0.91208 1.00665 0.87651 1.22106 0.99758 0.96372 0.97321 1.30456 1.14130 1.12532 1.14460 1.09129 0.79145 0.78070 0.76680 1.93624 1.72309 1.78074 1.49607 1.93608 1.77517 1.60174 1.62763 1.30743 1.15627 1.12507 1.12812 0.92444 0.91453 0.90860 0.89422 0.90766 0.92548 0.90445 0.93333 0.94926 0.91920 0.88187 0.88236 0.89999 0.86941 0.84369 0.84422 0.84311 0.84265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 10.25 59.85 0.61 1.25 16 2 N -0.61 -7.85 2.87 -181.57 -0.52 -8.37 16 3 C 0.11 1.98 5.49 -4.04 -0.02 1.96 16 4 C 0.13 2.63 4.32 -72.41 -0.31 2.31 16 5 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 6 C -0.16 -2.76 8.00 -26.36 -0.21 -2.97 16 7 C 0.13 2.90 6.07 -8.66 -0.05 2.85 16 8 N -0.61 -15.42 3.55 -177.21 -0.63 -16.05 16 9 C -0.31 -8.92 10.53 -15.06 -0.16 -9.08 16 10 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 11 C -0.03 -0.89 5.50 -17.43 -0.10 -0.98 16 12 N -0.94 -29.07 13.63 55.49 0.76 -28.31 16 13 Si 1.08 25.90 29.92 -169.99 -5.09 20.82 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 15 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 17 C 0.51 6.58 7.45 -10.99 -0.08 6.49 16 18 O -0.53 -9.22 13.78 5.55 0.08 -9.15 16 19 C -0.13 -0.97 3.85 -27.88 -0.11 -1.08 16 20 C -0.07 -0.57 2.21 -89.08 -0.20 -0.76 16 21 H 0.11 0.91 7.92 -51.93 -0.41 0.50 16 22 C -0.12 -1.00 5.34 -25.67 -0.14 -1.14 16 23 C -0.59 -4.20 7.26 37.77 0.27 -3.92 16 24 S 2.39 19.02 6.10 -107.50 -0.66 18.37 16 25 O -0.94 -11.06 18.15 -57.73 -1.05 -12.11 16 26 O -0.94 -10.59 18.15 -57.73 -1.05 -11.63 16 27 C -0.59 -3.13 6.67 38.24 0.26 -2.88 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.36 6.47 -51.92 -0.34 0.02 16 30 H 0.07 0.57 7.94 -51.93 -0.41 0.16 16 31 H 0.09 1.82 7.24 -51.93 -0.38 1.44 16 32 H 0.07 1.21 7.67 -51.93 -0.40 0.81 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.25 7.93 -51.92 -0.41 0.84 16 35 H 0.05 1.16 7.89 -51.93 -0.41 0.75 16 36 H 0.03 0.76 7.90 -51.93 -0.41 0.35 16 37 H 0.27 8.14 5.09 -40.82 -0.21 7.94 16 38 H 0.10 0.53 7.26 -51.93 -0.38 0.15 16 39 H 0.10 0.57 8.07 -51.93 -0.42 0.15 16 40 H 0.08 0.57 8.04 -51.93 -0.42 0.15 16 41 H 0.11 1.30 6.60 -51.93 -0.34 0.96 16 42 H 0.14 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.14 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.14 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.14 0.47 8.10 -51.93 -0.42 0.05 16 LS Contribution 371.22 15.07 5.59 5.59 Total: -1.00 -40.27 371.22 -9.89 -50.16 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -7.09 Total: -1.37 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -0.23 Total: -7.94 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: -0.40 Total: -52.74 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -2.02 Total: -32.89 kcal Atomic # 14 Polarization: 25.90 SS G_CDS: -5.09 Total: 20.82 kcal Atomic # 16 Polarization: 19.02 SS G_CDS: -0.66 Total: 18.37 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -40.27 -9.89 -50.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688878433.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.059 kcal (2) G-P(sol) polarization free energy of solvation -40.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds