Wall clock time and date at job start Tue Mar 31 2020 05:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46495 * 119.99898 * 2 1 4 4 C 1.53002 * 109.47089 * 265.78086 * 3 2 1 5 5 H 1.09004 * 112.96186 * 310.03714 * 4 3 2 6 6 C 1.53948 * 113.76770 * 178.36117 * 4 3 2 7 7 C 1.53948 * 86.28664 * 222.08882 * 6 4 3 8 8 N 1.47580 * 86.11990 * 23.60818 * 7 6 4 9 9 C 1.36934 * 134.49591 * 155.35671 * 8 7 6 10 10 H 1.07999 * 120.00231 * 147.82605 * 9 8 7 11 11 C 1.38817 * 119.99763 * 327.82926 * 9 8 7 12 12 N 1.31615 * 119.99844 * 170.46041 * 11 9 8 13 13 Si 1.86801 * 120.00128 * 350.46831 * 11 9 8 14 14 H 1.48500 * 109.47378 * 84.80492 * 13 11 9 15 15 H 1.48495 * 109.46850 * 204.80695 * 13 11 9 16 16 H 1.48500 * 109.46958 * 324.80240 * 13 11 9 17 17 C 1.34774 * 119.99991 * 179.97438 * 2 1 3 18 18 O 1.21285 * 120.00234 * 179.97438 * 17 2 1 19 19 C 1.50705 * 120.00253 * 0.02562 * 17 2 1 20 20 C 1.52995 * 109.47149 * 179.97438 * 19 17 2 21 21 H 1.09005 * 109.64325 * 305.69902 * 20 19 17 22 22 C 1.53876 * 109.64360 * 185.27233 * 20 19 17 23 23 C 1.55060 * 106.62138 * 193.09608 * 22 20 19 24 24 S 1.83290 * 102.56485 * 42.43426 * 23 22 20 25 25 O 1.42096 * 109.35315 * 90.18359 * 24 23 22 26 26 O 1.42100 * 109.35001 * 223.39105 * 24 23 22 27 27 C 1.54164 * 109.54047 * 66.06024 * 20 19 17 28 28 H 1.09004 * 109.47002 * 264.36939 * 1 2 3 29 29 H 1.08990 * 109.47352 * 24.37244 * 1 2 3 30 30 H 1.09000 * 109.47003 * 144.37315 * 1 2 3 31 31 H 1.09000 * 109.47063 * 25.78008 * 3 2 1 32 32 H 1.08994 * 109.47648 * 145.78021 * 3 2 1 33 33 H 1.08997 * 113.74376 * 336.43137 * 6 4 3 34 34 H 1.08995 * 113.74167 * 107.75060 * 6 4 3 35 35 H 1.09007 * 113.76771 * 137.91178 * 7 6 4 36 36 H 1.09002 * 113.77402 * 269.30005 * 7 6 4 37 37 H 0.97001 * 120.00014 * 179.97438 * 12 11 9 38 38 H 1.09005 * 109.46872 * 59.99475 * 19 17 2 39 39 H 1.08994 * 109.46935 * 300.00006 * 19 17 2 40 40 H 1.08994 * 110.03014 * 312.38275 * 22 20 19 41 41 H 1.09002 * 110.02942 * 73.80697 * 22 20 19 42 42 H 1.09004 * 110.78801 * 160.69968 * 23 22 20 43 43 H 1.08992 * 110.79041 * 284.16310 * 23 22 20 44 44 H 1.09000 * 110.31864 * 266.60159 * 27 20 19 45 45 H 1.09001 * 110.31490 * 28.79479 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5444 1.6573 -1.4386 5 1 3.0138 0.8471 -1.9965 6 6 3.2842 3.0022 -1.5568 7 6 2.3752 3.2817 -2.7674 8 7 1.4384 2.3167 -2.1598 9 6 0.0862 2.1143 -2.2350 10 1 -0.3159 1.1155 -2.1504 11 6 -0.7678 3.1930 -2.4201 12 7 -2.0415 2.9869 -2.6798 13 14 -0.1091 4.9369 -2.3007 14 1 0.4616 5.3413 -3.6107 15 1 -1.2142 5.8595 -1.9362 16 1 0.9488 4.9964 -1.2603 17 6 2.1389 -1.1672 0.0005 18 8 3.3517 -1.1672 0.0001 19 6 1.3854 -2.4724 0.0005 20 6 2.3797 -3.6352 0.0005 21 1 3.0731 -3.5244 -0.8332 22 6 1.6190 -4.9662 -0.1326 23 6 2.6302 -6.0910 0.2089 24 16 3.5093 -5.4082 1.6651 25 8 2.8332 -5.8029 2.8510 26 8 4.9031 -5.6487 1.5290 27 6 3.1628 -3.6440 1.3284 28 1 -0.3633 -0.1008 1.0227 29 1 -0.3633 0.9360 -0.4240 30 1 -0.3633 -0.8353 -0.5986 31 1 1.5777 2.0460 0.4470 32 1 3.1150 1.1586 0.5779 33 1 3.1126 3.6730 -0.7150 34 1 4.3387 2.9018 -1.8138 35 1 1.9930 4.3019 -2.8035 36 1 2.7939 2.9493 -3.7173 37 1 -2.6383 3.7406 -2.8087 38 1 0.7590 -2.5302 -0.8897 39 1 0.7585 -2.5299 0.8902 40 1 0.7836 -4.9903 0.5669 41 1 1.2557 -5.0880 -1.1531 42 1 2.1100 -7.0131 0.4683 43 1 3.3208 -6.2547 -0.6183 44 1 4.0948 -3.0888 1.2218 45 1 2.5568 -3.2179 2.1280 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688878434.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:31 Heat of formation + Delta-G solvation = -42.832244 kcal Electronic energy + Delta-G solvation = -27229.849360 eV Core-core repulsion = 23377.031100 eV Total energy + Delta-G solvation = -3852.818260 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.79 seconds Orbital eigenvalues (eV) -39.97202 -38.33344 -37.23879 -36.90601 -36.15269 -34.96707 -32.47622 -31.38569 -29.40485 -28.55132 -27.62746 -26.03703 -24.73554 -23.32938 -22.70949 -20.95181 -19.29396 -19.08015 -18.67000 -17.27339 -17.23606 -16.90112 -16.41833 -15.90879 -15.87994 -15.44999 -15.16418 -14.87050 -14.41526 -14.08615 -13.94135 -13.50897 -13.13038 -13.06487 -12.81663 -12.52162 -12.46543 -12.34497 -12.28571 -12.19474 -12.10374 -11.80269 -11.61426 -11.47507 -11.35537 -11.15261 -11.09943 -10.93013 -10.85620 -10.46405 -10.44047 -10.37326 -9.81481 -9.55102 -9.43955 -8.69265 -8.21962 -6.98465 -6.08347 -3.50746 -0.14929 2.32199 2.86634 3.25785 3.28131 3.37567 3.39882 3.41753 3.78492 4.08330 4.27825 4.30628 4.43353 4.57654 4.59447 4.64988 4.87747 5.06409 5.16403 5.18212 5.23697 5.32830 5.34752 5.42493 5.44248 5.65613 5.73581 5.78060 5.82556 5.85151 5.89046 5.96522 6.09897 6.17851 6.33515 6.39116 6.41393 6.58527 6.85465 7.06306 7.40174 7.77932 8.21440 8.44394 8.56013 9.51733 10.30917 11.07028 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.025871 B = 0.002823 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.037711 B = 9916.515329 C =10469.444565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.595 5.595 3 C 0.120 3.880 4 C 0.134 3.866 5 H 0.056 0.944 6 C -0.148 4.148 7 C 0.097 3.903 8 N -0.618 5.618 9 C -0.237 4.237 10 H 0.091 0.909 11 C 0.030 3.970 12 N -0.912 5.912 13 Si 0.896 3.104 14 H -0.287 1.287 15 H -0.303 1.303 16 H -0.270 1.270 17 C 0.508 3.492 18 O -0.552 6.552 19 C -0.132 4.132 20 C -0.067 4.067 21 H 0.102 0.898 22 C -0.118 4.118 23 C -0.588 4.588 24 S 2.381 3.619 25 O -0.943 6.943 26 O -0.943 6.943 27 C -0.576 4.576 28 H 0.043 0.957 29 H 0.123 0.877 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.044 0.956 36 H 0.041 0.959 37 H 0.265 0.735 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.151 0.849 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.313 -13.406 6.190 16.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.325 5.325 3 C -0.004 4.004 4 C 0.027 3.973 5 H 0.073 0.927 6 C -0.187 4.187 7 C -0.027 4.027 8 N -0.347 5.347 9 C -0.364 4.364 10 H 0.108 0.892 11 C -0.170 4.170 12 N -0.554 5.554 13 Si 0.728 3.272 14 H -0.215 1.215 15 H -0.231 1.231 16 H -0.195 1.195 17 C 0.296 3.704 18 O -0.431 6.431 19 C -0.172 4.172 20 C -0.087 4.087 21 H 0.120 0.880 22 C -0.157 4.157 23 C -0.718 4.718 24 S 2.565 3.435 25 O -0.940 6.940 26 O -0.940 6.940 27 C -0.706 4.706 28 H 0.062 0.938 29 H 0.141 0.859 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.119 0.881 42 H 0.154 0.846 43 H 0.155 0.845 44 H 0.169 0.831 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.030 -13.811 6.908 16.968 hybrid contribution -0.411 1.455 -0.884 1.752 sum 6.619 -12.356 6.024 15.257 Atomic orbital electron populations 1.22388 0.78597 1.07084 1.00504 1.47742 1.07678 1.05692 1.71428 1.21802 0.96429 0.84346 0.97774 1.22696 0.88605 0.94184 0.91854 0.92657 1.23592 0.97562 0.98094 0.99454 1.22832 0.90232 0.94940 0.94738 1.46232 1.01533 1.37113 1.49801 1.18609 0.77758 0.94044 1.45987 0.89154 1.25226 0.94704 0.98148 0.98888 1.69734 1.03629 1.31305 1.50763 0.86636 0.77127 0.85092 0.78378 1.21456 1.23118 1.19501 1.20456 0.87981 0.85454 0.76546 1.90635 1.13850 1.87537 1.51074 1.21736 0.98550 0.91842 1.05119 1.21336 0.96921 0.93945 0.96455 0.87952 1.22323 0.97494 0.90130 1.05737 1.30599 1.12252 1.08424 1.20480 1.09265 0.76081 0.80283 0.77822 1.93609 1.76061 1.81119 1.43230 1.93608 1.29408 1.84002 1.86970 1.30571 1.11691 1.22447 1.05909 0.93836 0.85884 0.92062 0.89879 0.90752 0.90308 0.92197 0.93846 0.94093 0.92514 0.87965 0.88504 0.89230 0.88141 0.84611 0.84470 0.83128 0.84836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.85 9.18 59.85 0.55 1.40 16 2 N -0.59 -9.34 2.88 -181.58 -0.52 -9.87 16 3 C 0.12 2.03 5.20 -4.04 -0.02 2.01 16 4 C 0.13 2.51 4.52 -66.86 -0.30 2.21 16 5 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 6 C -0.15 -2.56 7.86 -25.80 -0.20 -2.76 16 7 C 0.10 1.98 7.60 -2.97 -0.02 1.96 16 8 N -0.62 -13.84 3.12 -170.71 -0.53 -14.37 16 9 C -0.24 -6.01 8.91 -15.06 -0.13 -6.14 16 10 H 0.09 2.36 6.15 -52.49 -0.32 2.04 16 11 C 0.03 0.81 5.50 -17.43 -0.10 0.72 16 12 N -0.91 -25.94 13.97 55.49 0.78 -25.16 16 13 Si 0.90 21.57 24.81 -169.99 -4.22 17.35 16 14 H -0.29 -6.93 6.99 56.52 0.40 -6.54 16 15 H -0.30 -7.44 7.11 56.52 0.40 -7.03 16 16 H -0.27 -6.24 6.86 56.52 0.39 -5.86 16 17 C 0.51 7.37 7.41 -10.98 -0.08 7.29 16 18 O -0.55 -9.28 14.19 5.55 0.08 -9.20 16 19 C -0.13 -1.31 3.69 -27.88 -0.10 -1.41 16 20 C -0.07 -0.56 2.24 -89.56 -0.20 -0.77 16 21 H 0.10 0.93 7.94 -51.93 -0.41 0.52 16 22 C -0.12 -0.69 5.80 -25.19 -0.15 -0.84 16 23 C -0.59 -3.35 7.31 38.25 0.28 -3.07 16 24 S 2.38 21.24 6.11 -107.50 -0.66 20.59 16 25 O -0.94 -11.44 18.14 -57.71 -1.05 -12.49 16 26 O -0.94 -12.09 18.15 -57.71 -1.05 -13.13 16 27 C -0.58 -5.13 5.84 37.77 0.22 -4.91 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.12 2.35 4.71 -51.93 -0.24 2.10 16 30 H 0.06 0.82 6.68 -51.93 -0.35 0.47 16 31 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 32 H 0.07 1.20 7.55 -51.93 -0.39 0.80 16 33 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.04 0.94 3.90 -51.93 -0.20 0.74 16 36 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.10 0.93 7.42 -51.93 -0.39 0.54 16 39 H 0.10 0.78 7.98 -51.93 -0.41 0.36 16 40 H 0.09 0.42 8.11 -51.93 -0.42 0.00 16 41 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.14 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.14 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.15 1.55 7.31 -51.93 -0.38 1.17 16 45 H 0.13 1.07 7.79 -51.93 -0.40 0.67 16 LS Contribution 360.36 15.07 5.43 5.43 Total: -1.00 -35.33 360.36 -8.88 -44.21 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -6.88 Total: 0.95 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -0.26 Total: -4.31 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: -0.28 Total: -49.40 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -2.02 Total: -34.82 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.22 Total: 17.35 kcal Atomic # 16 Polarization: 21.24 SS G_CDS: -0.66 Total: 20.59 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.33 -8.88 -44.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688878434.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.378 kcal (2) G-P(sol) polarization free energy of solvation -35.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.79 seconds