Wall clock time and date at job start Tue Mar 31 2020 05:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 120.00199 * 2 1 4 4 C 1.52999 * 109.47349 * 274.73166 * 3 2 1 5 5 H 1.08999 * 112.73622 * 316.17785 * 4 3 2 6 6 C 1.53500 * 113.46967 * 86.99993 * 4 3 2 7 7 C 1.53499 * 83.34114 * 140.84789 * 6 4 3 8 8 N 1.47060 * 87.99011 * 333.93204 * 7 6 4 9 9 C 1.36936 * 136.06230 * 207.08497 * 8 7 6 10 10 H 1.08001 * 120.00501 * 174.83953 * 9 8 7 11 11 C 1.38816 * 119.99769 * 354.83939 * 9 8 7 12 12 N 1.31623 * 119.99933 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99953 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.46994 * 60.00350 * 13 11 9 15 15 H 1.48506 * 109.47086 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47455 * 300.00296 * 13 11 9 17 17 C 1.34779 * 120.00088 * 180.02562 * 2 1 3 18 18 O 1.21277 * 120.00244 * 175.01496 * 17 2 1 19 19 C 1.50703 * 119.99795 * 355.01224 * 17 2 1 20 20 C 1.53001 * 109.46949 * 180.02562 * 19 17 2 21 21 H 1.08999 * 110.01223 * 53.62200 * 20 19 17 22 22 C 1.53874 * 110.02515 * 174.99841 * 20 19 17 23 23 C 1.54172 * 108.70401 * 166.46860 * 22 20 19 24 24 S 1.82920 * 105.08425 * 332.09546 * 23 22 20 25 25 O 1.42102 * 109.35279 * 115.52037 * 24 23 22 26 26 O 1.42098 * 109.34760 * 248.58672 * 24 23 22 27 27 C 1.55040 * 110.02680 * 292.19148 * 20 19 17 28 28 H 1.09002 * 109.46969 * 269.99665 * 1 2 3 29 29 H 1.08999 * 109.47238 * 29.99565 * 1 2 3 30 30 H 1.08997 * 109.47226 * 149.99562 * 1 2 3 31 31 H 1.09004 * 109.47051 * 34.72993 * 3 2 1 32 32 H 1.09001 * 109.47417 * 154.72748 * 3 2 1 33 33 H 1.08994 * 114.20316 * 254.43590 * 6 4 3 34 34 H 1.08994 * 114.20603 * 27.26532 * 6 4 3 35 35 H 1.09004 * 113.46651 * 219.14788 * 7 6 4 36 36 H 1.09003 * 113.51968 * 88.72235 * 7 6 4 37 37 H 0.97003 * 119.99965 * 180.02562 * 12 11 9 38 38 H 1.09001 * 109.46870 * 300.00116 * 19 17 2 39 39 H 1.09000 * 109.46955 * 60.00223 * 19 17 2 40 40 H 1.09003 * 109.65083 * 286.32281 * 22 20 19 41 41 H 1.08998 * 109.64798 * 46.75398 * 22 20 19 42 42 H 1.08999 * 110.31658 * 90.99646 * 23 22 20 43 43 H 1.09000 * 110.32233 * 213.08860 * 23 22 20 44 44 H 1.09003 * 110.79168 * 316.54582 * 27 20 19 45 45 H 1.08993 * 110.79577 * 80.00677 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3495 1.7699 -1.4376 5 1 2.6329 0.9788 -2.1318 6 6 1.1602 2.6117 -1.9204 7 6 2.2565 3.4516 -2.5905 8 7 3.1831 2.9761 -1.5522 9 6 4.3216 3.4482 -0.9554 10 1 4.7662 2.9050 -0.1347 11 6 4.9042 4.6251 -1.4054 12 7 4.3621 5.2874 -2.4053 13 14 6.4568 5.2695 -0.5908 14 1 7.5390 4.2610 -0.7206 15 1 6.8746 6.5324 -1.2511 16 1 6.1908 5.5278 0.8472 17 6 2.1389 -1.1672 -0.0005 18 8 3.3482 -1.1692 -0.0918 19 6 1.3896 -2.4699 0.1124 20 6 2.3830 -3.6333 0.0882 21 1 3.1467 -3.4876 0.8521 22 6 1.6445 -4.9618 0.3279 23 6 2.5887 -6.1250 -0.0361 24 16 3.7142 -5.4445 -1.3074 25 8 5.0416 -5.4273 -0.8006 26 8 3.4417 -6.0633 -2.5572 27 6 3.0431 -3.7388 -1.3107 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5139 31 1 1.6477 2.0057 0.5855 32 1 3.1840 1.1187 0.4387 33 1 0.5022 2.0958 -2.6197 34 1 0.6256 3.1285 -1.1235 35 1 2.0690 4.5245 -2.5467 36 1 2.5150 3.1096 -3.5927 37 1 4.7695 6.1096 -2.7200 38 1 0.8318 -2.4882 1.0487 39 1 0.6979 -2.5648 -0.7246 40 1 1.3573 -5.0375 1.3767 41 1 0.7545 -5.0048 -0.2998 42 1 3.1545 -6.4415 0.8400 43 1 2.0197 -6.9619 -0.4410 44 1 2.3005 -3.6168 -2.0992 45 1 3.8447 -3.0080 -1.4164 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688878435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:37 Heat of formation + Delta-G solvation = -44.661840 kcal Electronic energy + Delta-G solvation = -26848.894488 eV Core-core repulsion = 22995.996890 eV Total energy + Delta-G solvation = -3852.897597 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.11039 -38.22862 -37.23010 -36.98998 -36.15396 -35.23104 -32.19420 -31.48845 -29.27960 -27.99290 -27.84055 -26.26542 -24.75471 -23.44768 -22.31451 -20.97068 -19.29857 -19.07916 -18.96921 -17.41133 -16.93139 -16.78992 -16.46952 -16.05107 -15.88565 -15.48692 -14.95312 -14.70252 -14.36600 -14.26127 -13.77022 -13.72030 -13.21539 -13.09432 -12.78100 -12.70605 -12.51812 -12.35314 -12.24904 -12.23032 -12.15474 -11.84522 -11.77513 -11.47411 -11.24152 -11.12302 -10.93739 -10.89542 -10.74478 -10.48662 -10.44273 -9.86405 -9.84720 -9.68920 -9.40336 -8.77353 -8.33928 -6.85751 -5.74665 -3.06528 -0.17528 2.31447 2.70283 3.04713 3.37249 3.42839 3.47210 3.48707 3.73184 3.98559 4.14687 4.22481 4.46456 4.49412 4.52636 4.70560 4.89033 4.97059 5.10051 5.16019 5.20992 5.23361 5.27967 5.30347 5.34023 5.47760 5.49745 5.65706 5.70642 5.73146 5.79632 5.95452 6.14950 6.27411 6.41622 6.50522 6.66549 6.85237 7.24097 7.40020 7.51677 7.57988 8.00615 8.28756 9.07070 9.73429 10.66824 11.43411 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015441 B = 0.002894 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.887590 B = 9673.571379 C =10595.479386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.611 5.611 3 C 0.114 3.886 4 C 0.134 3.866 5 H 0.042 0.958 6 C -0.169 4.169 7 C 0.158 3.842 8 N -0.600 5.600 9 C -0.217 4.217 10 H 0.080 0.920 11 C -0.007 4.007 12 N -0.921 5.921 13 Si 0.911 3.089 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.284 1.284 17 C 0.505 3.495 18 O -0.531 6.531 19 C -0.126 4.126 20 C -0.075 4.075 21 H 0.105 0.895 22 C -0.110 4.110 23 C -0.596 4.596 24 S 2.384 3.616 25 O -0.935 6.935 26 O -0.944 6.944 27 C -0.578 4.578 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.024 0.976 37 H 0.254 0.746 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.413 -20.595 6.590 25.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.344 5.344 3 C -0.009 4.009 4 C 0.025 3.975 5 H 0.060 0.940 6 C -0.208 4.208 7 C 0.032 3.968 8 N -0.326 5.326 9 C -0.344 4.344 10 H 0.098 0.902 11 C -0.203 4.203 12 N -0.568 5.568 13 Si 0.741 3.259 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.211 1.211 17 C 0.292 3.708 18 O -0.407 6.407 19 C -0.166 4.166 20 C -0.095 4.095 21 H 0.123 0.877 22 C -0.148 4.148 23 C -0.725 4.725 24 S 2.568 3.432 25 O -0.932 6.932 26 O -0.941 6.941 27 C -0.709 4.709 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.042 0.958 37 H 0.064 0.936 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.154 0.846 43 H 0.155 0.845 44 H 0.153 0.847 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.720 -20.772 6.065 25.101 hybrid contribution 0.178 0.755 0.673 1.027 sum -12.543 -20.017 6.739 24.564 Atomic orbital electron populations 1.21819 0.79936 1.03427 1.01511 1.47899 1.06833 1.06576 1.73108 1.21886 0.97378 0.82467 0.99148 1.22403 0.90397 0.91132 0.93542 0.94050 1.23765 0.96300 1.00049 1.00637 1.21927 0.85152 0.98582 0.91120 1.45693 1.28281 1.16069 1.42527 1.18884 0.99955 1.04595 1.11006 0.90192 1.24802 0.99117 0.98234 0.98192 1.69835 1.40923 1.17774 1.28250 0.86216 0.83094 0.78048 0.78527 1.21074 1.21583 1.21060 1.20516 0.88148 0.85264 0.76851 1.90732 1.14135 1.87024 1.48845 1.21642 0.98488 0.91771 1.04739 1.21634 0.98331 0.94141 0.95420 0.87687 1.21982 0.98173 0.89847 1.04821 1.30505 1.14977 1.08453 1.18537 1.09197 0.77214 0.79791 0.76976 1.93636 1.32684 1.86021 1.80884 1.93604 1.86246 1.74404 1.39867 1.30750 1.13418 1.22566 1.04136 0.92814 0.90365 0.91435 0.90587 0.89773 0.92845 0.90578 0.91605 0.95799 0.93645 0.88199 0.88315 0.88833 0.89535 0.84609 0.84518 0.84659 0.82853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.63 10.23 59.85 0.61 1.24 16 2 N -0.61 -7.91 2.87 -181.58 -0.52 -8.43 16 3 C 0.11 1.98 5.37 -4.04 -0.02 1.96 16 4 C 0.13 2.71 4.31 -72.40 -0.31 2.39 16 5 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 6 C -0.17 -3.02 7.13 -26.21 -0.19 -3.21 16 7 C 0.16 3.72 7.28 -8.51 -0.06 3.66 16 8 N -0.60 -15.44 3.65 -176.99 -0.65 -16.09 16 9 C -0.22 -6.17 10.55 -15.06 -0.16 -6.33 16 10 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 11 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 12 N -0.92 -27.74 11.64 55.49 0.65 -27.10 16 13 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 14 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 17 C 0.50 6.61 7.45 -10.98 -0.08 6.53 16 18 O -0.53 -9.41 13.99 5.56 0.08 -9.33 16 19 C -0.13 -0.92 3.85 -27.88 -0.11 -1.03 16 20 C -0.08 -0.55 2.21 -89.09 -0.20 -0.75 16 21 H 0.10 0.89 7.92 -51.93 -0.41 0.47 16 22 C -0.11 -0.46 5.75 -25.66 -0.15 -0.60 16 23 C -0.60 -2.90 7.26 37.77 0.27 -2.63 16 24 S 2.38 21.72 6.10 -107.50 -0.66 21.07 16 25 O -0.94 -12.67 18.15 -57.73 -1.05 -13.72 16 26 O -0.94 -11.71 18.15 -57.73 -1.05 -12.76 16 27 C -0.58 -5.13 6.11 38.24 0.23 -4.89 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.68 7.16 -51.93 -0.37 0.30 16 30 H 0.07 0.38 6.47 -51.93 -0.34 0.04 16 31 H 0.08 1.25 7.83 -51.93 -0.41 0.85 16 32 H 0.08 1.72 7.36 -51.93 -0.38 1.34 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.28 7.93 -51.93 -0.41 0.87 16 35 H 0.07 1.70 7.36 -51.93 -0.38 1.31 16 36 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.10 0.50 7.20 -51.93 -0.37 0.13 16 40 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.09 0.21 8.10 -51.93 -0.42 -0.21 16 42 H 0.14 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.14 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.14 0.94 8.06 -51.93 -0.42 0.52 16 45 H 0.15 1.80 6.92 -51.93 -0.36 1.44 16 LS Contribution 372.01 15.07 5.61 5.61 Total: -1.00 -39.99 372.01 -10.07 -50.06 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -7.20 Total: -2.99 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -0.25 Total: -3.95 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: -0.52 Total: -51.61 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -2.02 Total: -35.81 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Atomic # 16 Polarization: 21.72 SS G_CDS: -0.66 Total: 21.07 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -39.99 -10.07 -50.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688878435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.398 kcal (2) G-P(sol) polarization free energy of solvation -39.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds