Wall clock time and date at job start Tue Mar 31 2020 05:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42106 * 108.57621 * 2 1 4 4 O 1.42104 * 108.57996 * 228.97669 * 2 1 3 5 5 C 1.81400 * 101.92412 * 114.48874 * 2 1 3 6 6 C 1.50702 * 112.84630 * 280.47786 * 5 2 1 7 7 O 1.21277 * 119.99905 * 107.93887 * 6 5 2 8 8 N 1.34781 * 119.99949 * 288.21129 * 6 5 2 9 9 C 1.47024 * 125.64828 * 352.17961 * 8 6 5 10 10 C 1.54325 * 107.26870 * 178.90563 * 9 8 6 11 11 C 1.55154 * 102.94119 * 337.80769 * 10 9 8 12 12 H 1.09001 * 111.00681 * 277.42649 * 11 10 9 13 13 C 1.53008 * 110.99885 * 153.57926 * 11 10 9 14 14 N 1.46503 * 109.47308 * 66.45434 * 13 11 10 15 15 C 1.36935 * 119.99822 * 180.02562 * 14 13 11 16 16 H 1.07998 * 119.99721 * 359.97438 * 15 14 13 17 17 C 1.38805 * 119.99821 * 179.97438 * 15 14 13 18 18 N 1.31624 * 119.99999 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00078 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46864 * 60.00127 * 19 17 15 21 21 H 1.48506 * 109.47430 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47281 * 300.00235 * 19 17 15 23 23 C 1.47417 * 125.64707 * 171.87620 * 8 6 5 24 24 C 1.53776 * 113.68950 * 51.74153 * 5 2 1 25 25 C 1.53788 * 87.08030 * 139.99363 * 24 5 2 26 26 C 1.53783 * 87.08123 * 334.56844 * 25 24 5 27 27 H 1.08997 * 109.47489 * 330.01637 * 1 2 3 28 28 H 1.09000 * 109.47228 * 90.02614 * 1 2 3 29 29 H 1.09004 * 109.46830 * 210.01739 * 1 2 3 30 30 H 1.09002 * 109.88217 * 298.32492 * 9 8 6 31 31 H 1.09004 * 109.87688 * 59.33389 * 9 8 6 32 32 H 1.08996 * 110.71911 * 96.17307 * 10 9 8 33 33 H 1.09002 * 110.71309 * 219.44503 * 10 9 8 34 34 H 1.09002 * 109.46625 * 186.45665 * 13 11 10 35 35 H 1.08995 * 109.46918 * 306.45025 * 13 11 10 36 36 H 0.96999 * 119.99640 * 359.97438 * 14 13 11 37 37 H 0.97003 * 119.99704 * 179.97438 * 18 17 15 38 38 H 1.09002 * 110.37159 * 323.00212 * 23 8 6 39 39 H 1.09001 * 110.36851 * 85.32732 * 23 8 6 40 40 H 1.09000 * 113.61649 * 254.54233 * 24 5 2 41 41 H 1.09000 * 113.61193 * 25.44923 * 24 5 2 42 42 H 1.08998 * 113.61794 * 220.02380 * 25 24 5 43 43 H 1.09004 * 113.69053 * 89.12323 * 25 24 5 44 44 H 1.09004 * 113.61513 * 270.88667 * 26 25 24 45 45 H 1.08994 * 113.61689 * 139.97539 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7357 1.6152 6 6 2.0625 0.2481 2.7498 7 8 1.1343 0.1631 3.5256 8 7 2.9782 1.2259 2.8989 9 6 4.2280 1.3531 2.1351 10 6 4.9376 2.6321 2.6274 11 6 3.7771 3.4589 3.2413 12 1 3.2367 4.0068 2.4693 13 6 4.2933 4.4080 4.3248 14 7 5.1506 5.4268 3.7136 15 6 5.7306 6.3912 4.4937 16 1 5.5558 6.4010 5.5594 17 6 6.5433 7.3561 3.9147 18 7 6.7567 7.3438 2.6159 19 14 7.3340 8.6722 4.9787 20 1 8.2073 8.0295 5.9935 21 1 8.1484 9.5749 4.1260 22 1 6.2757 9.4578 5.6626 23 6 2.8894 2.3482 3.8506 24 6 1.4633 -2.0672 1.8709 25 6 2.7678 -2.5635 2.5168 26 6 3.5013 -1.5368 1.6376 27 1 -0.3634 0.8901 0.5135 28 1 -0.3634 -0.0005 -1.0277 29 1 -0.3633 -0.8899 0.5141 30 1 4.8621 0.4849 2.3145 31 1 4.0054 1.4360 1.0712 32 1 5.6831 2.3920 3.3854 33 1 5.3924 3.1661 1.7931 34 1 3.4491 4.8910 4.8169 35 1 4.8673 3.8430 5.0592 36 1 5.3078 5.4176 2.7565 37 1 7.3243 8.0183 2.2113 38 1 1.8584 2.6911 3.9378 39 1 3.2747 2.0501 4.8257 40 1 0.6329 -1.9844 2.5721 41 1 1.1969 -2.6014 0.9589 42 1 3.0093 -3.5982 2.2736 43 1 2.8361 -2.3523 3.5840 44 1 3.7919 -1.9260 0.6618 45 1 4.3160 -1.0257 2.1504 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690745747.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:48 Heat of formation + Delta-G solvation = -53.342818 kcal Electronic energy + Delta-G solvation = -27607.129556 eV Core-core repulsion = 23753.855523 eV Total energy + Delta-G solvation = -3853.274033 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -40.99719 -38.66911 -37.49389 -37.04277 -36.40294 -34.69996 -32.28054 -30.27375 -30.09169 -29.22780 -27.53361 -26.25779 -25.18097 -23.39190 -22.39242 -21.07667 -20.05346 -19.98096 -18.59016 -18.23622 -17.07562 -16.70561 -16.53566 -16.36814 -16.08275 -15.57555 -15.17085 -14.54072 -14.03789 -13.86308 -13.72398 -13.59918 -13.52849 -13.30661 -13.06596 -12.97197 -12.87441 -12.69774 -12.56536 -12.46482 -12.39293 -12.35417 -11.59116 -11.44348 -11.33186 -11.20526 -11.01558 -10.81474 -10.65695 -10.54344 -10.40840 -10.30615 -10.10416 -9.98554 -9.67834 -8.86159 -8.68461 -6.91271 -5.75062 -3.03944 -0.48253 2.04432 2.48171 2.63040 3.06369 3.45252 3.46404 3.49631 3.50661 3.73779 3.88879 4.05933 4.18710 4.43652 4.56103 4.58446 4.68940 4.77027 4.89535 4.98287 5.04749 5.20838 5.29036 5.33806 5.41969 5.46523 5.49199 5.56345 5.61553 5.69851 5.78207 5.86135 6.03147 6.08431 6.15239 6.17540 6.44062 6.46244 6.73133 6.87242 7.34054 7.70673 7.83428 8.43688 9.54992 10.12340 10.47425 11.47627 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.023322 B = 0.002846 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.319527 B = 9836.700411 C =10225.753871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 2.426 3.574 3 O -0.915 6.915 4 O -0.927 6.927 5 C -0.605 4.605 6 C 0.569 3.431 7 O -0.528 6.528 8 N -0.597 5.597 9 C 0.073 3.927 10 C -0.116 4.116 11 C -0.106 4.106 12 H 0.089 0.911 13 C 0.165 3.835 14 N -0.730 5.730 15 C -0.241 4.241 16 H 0.070 0.930 17 C -0.013 4.013 18 N -0.933 5.933 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C 0.115 3.885 24 C -0.099 4.099 25 C -0.124 4.124 26 C -0.111 4.111 27 H 0.135 0.865 28 H 0.133 0.867 29 H 0.132 0.868 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.385 0.615 37 H 0.256 0.744 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.112 0.888 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.654 -22.757 -4.914 26.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.802 4.802 2 S 2.606 3.394 3 O -0.912 6.912 4 O -0.924 6.924 5 C -0.695 4.695 6 C 0.354 3.646 7 O -0.405 6.405 8 N -0.329 5.329 9 C -0.049 4.049 10 C -0.154 4.154 11 C -0.125 4.125 12 H 0.107 0.893 13 C 0.037 3.963 14 N -0.375 5.375 15 C -0.372 4.372 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.581 5.581 19 Si 0.738 3.262 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.007 4.007 24 C -0.137 4.137 25 C -0.162 4.162 26 C -0.149 4.149 27 H 0.153 0.847 28 H 0.151 0.849 29 H 0.150 0.850 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.219 0.781 37 H 0.065 0.935 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.100 0.900 43 H 0.107 0.893 44 H 0.130 0.870 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.555 -22.445 -5.017 25.738 hybrid contribution 0.001 0.594 0.745 0.953 sum -11.554 -21.851 -4.272 25.084 Atomic orbital electron populations 1.30255 1.25522 1.12483 1.11932 1.07950 0.79126 0.75964 0.76382 1.93639 1.78649 1.33389 1.85568 1.93612 1.79636 1.67493 1.51687 1.31630 1.10933 1.07184 1.19768 1.18142 0.82025 0.79959 0.84519 1.90703 1.33165 1.72753 1.43863 1.48313 1.20677 1.25296 1.38571 1.22746 0.84597 0.99598 0.97954 1.22596 0.97458 0.93483 1.01895 1.22548 0.95592 0.95053 0.99336 0.89266 1.20540 0.93392 0.89566 0.92798 1.42297 1.56414 1.30921 1.07857 1.19174 1.22234 1.04516 0.91266 0.91248 1.24734 1.00848 0.99503 0.95825 1.69653 1.42466 1.37035 1.08960 0.86266 0.79051 0.81641 0.79192 1.21308 1.21706 1.21294 1.22288 1.01233 0.85054 0.92090 1.22691 0.99161 0.88880 1.03001 1.22740 0.94435 0.99154 0.99883 1.22994 0.92648 0.95826 1.03399 0.84681 0.84850 0.84953 0.91232 0.89137 0.90249 0.89163 0.96032 0.96046 0.78116 0.93455 0.90274 0.90853 0.88003 0.88043 0.89964 0.89314 0.86990 0.88556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -4.27 10.58 101.05 1.07 -3.20 16 2 S 2.43 23.30 5.06 -107.50 -0.54 22.75 16 3 O -0.92 -12.05 14.72 -57.83 -0.85 -12.90 16 4 O -0.93 -10.41 17.27 -57.83 -1.00 -11.41 16 5 C -0.60 -5.57 0.66 -90.96 -0.06 -5.63 16 6 C 0.57 7.11 6.27 -10.98 -0.07 7.04 16 7 O -0.53 -7.83 16.36 5.56 0.09 -7.73 16 8 N -0.60 -7.88 3.16 -170.66 -0.54 -8.42 16 9 C 0.07 0.91 5.52 -3.06 -0.02 0.90 16 10 C -0.12 -1.71 6.13 -24.90 -0.15 -1.86 16 11 C -0.11 -1.70 3.09 -88.59 -0.27 -1.97 16 12 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 13 C 0.17 3.23 5.71 -4.04 -0.02 3.21 16 14 N -0.73 -18.20 5.45 -59.91 -0.33 -18.53 16 15 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 16 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 17 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 18 N -0.93 -28.07 13.06 55.49 0.72 -27.34 16 19 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 C 0.12 1.63 6.35 -2.65 -0.02 1.61 16 24 C -0.10 -0.67 5.85 -25.92 -0.15 -0.82 16 25 C -0.12 -0.84 7.80 -25.91 -0.20 -1.05 16 26 C -0.11 -0.85 6.67 -25.92 -0.17 -1.02 16 27 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.13 0.66 8.14 -51.92 -0.42 0.23 16 29 H 0.13 0.59 6.92 -51.92 -0.36 0.23 16 30 H 0.07 0.70 5.73 -51.93 -0.30 0.40 16 31 H 0.09 1.16 5.35 -51.93 -0.28 0.88 16 32 H 0.08 1.16 8.01 -51.93 -0.42 0.75 16 33 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.02 0.42 8.11 -51.93 -0.42 0.00 16 36 H 0.39 10.05 7.53 -40.82 -0.31 9.75 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.08 1.12 8.11 -51.93 -0.42 0.70 16 39 H 0.07 0.99 8.03 -51.93 -0.42 0.58 16 40 H 0.10 0.74 7.37 -51.93 -0.38 0.35 16 41 H 0.10 0.44 8.09 -51.93 -0.42 0.02 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.11 0.74 7.43 -51.93 -0.39 0.36 16 45 H 0.10 0.74 5.15 -51.93 -0.27 0.48 16 LS Contribution 365.03 15.07 5.50 5.50 Total: -1.00 -35.45 365.03 -9.16 -44.61 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -6.88 Total: 6.25 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -0.32 Total: -10.13 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: -0.14 Total: -54.29 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -1.76 Total: -32.04 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Atomic # 16 Polarization: 23.30 SS G_CDS: -0.54 Total: 22.75 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.45 -9.16 -44.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690745747.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.732 kcal (2) G-P(sol) polarization free energy of solvation -35.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds