Wall clock time and date at job start Tue Mar 31 2020 05:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42104 * 108.57799 * 2 1 4 4 O 1.42100 * 108.58106 * 228.97794 * 2 1 3 5 5 C 1.81397 * 101.92324 * 114.48648 * 2 1 3 6 6 C 1.50698 * 112.85215 * 320.22385 * 5 2 1 7 7 O 1.21287 * 119.99979 * 106.46548 * 6 5 2 8 8 N 1.34774 * 119.99886 * 286.47260 * 6 5 2 9 9 C 1.47022 * 125.64824 * 355.03538 * 8 6 5 10 10 C 1.54321 * 107.27028 * 181.01658 * 9 8 6 11 11 C 1.55157 * 102.94324 * 22.19117 * 10 9 8 12 12 H 1.09006 * 111.00203 * 82.61137 * 11 10 9 13 13 C 1.53001 * 111.00588 * 206.41980 * 11 10 9 14 14 N 1.46496 * 109.47458 * 293.55297 * 13 11 10 15 15 C 1.36933 * 120.00068 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00041 * 359.97438 * 15 14 13 17 17 C 1.38821 * 120.00290 * 179.97438 * 15 14 13 18 18 N 1.31622 * 119.99633 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00118 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47332 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46794 * 120.00556 * 19 17 15 22 22 H 1.48500 * 109.46842 * 240.00261 * 19 17 15 23 23 C 1.47422 * 125.64709 * 174.98871 * 8 6 5 24 24 C 1.53786 * 113.68838 * 91.49090 * 5 2 1 25 25 C 1.53783 * 87.08325 * 139.99256 * 24 5 2 26 26 C 1.53781 * 87.07890 * 334.56628 * 25 24 5 27 27 H 1.08994 * 109.47259 * 302.20258 * 1 2 3 28 28 H 1.09000 * 109.46847 * 62.20521 * 1 2 3 29 29 H 1.09005 * 109.47160 * 182.19895 * 1 2 3 30 30 H 1.08998 * 109.88208 * 61.60306 * 9 8 6 31 31 H 1.08999 * 109.88542 * 300.43437 * 9 8 6 32 32 H 1.09002 * 110.72095 * 263.83334 * 10 9 8 33 33 H 1.08998 * 110.72323 * 140.55870 * 10 9 8 34 34 H 1.08997 * 109.46753 * 173.54727 * 13 11 10 35 35 H 1.09002 * 109.46455 * 53.54988 * 13 11 10 36 36 H 0.97004 * 119.99790 * 359.97438 * 14 13 11 37 37 H 0.96993 * 119.99942 * 179.97438 * 18 17 15 38 38 H 1.09001 * 110.36991 * 37.07502 * 23 8 6 39 39 H 1.09007 * 110.36789 * 274.74925 * 23 8 6 40 40 H 1.08997 * 113.61397 * 254.54247 * 24 5 2 41 41 H 1.09003 * 113.61584 * 25.44560 * 24 5 2 42 42 H 1.08997 * 113.61841 * 220.01745 * 25 24 5 43 43 H 1.09002 * 113.61165 * 89.11580 * 25 24 5 44 44 H 1.08992 * 113.61834 * 270.88253 * 26 25 24 45 45 H 1.09005 * 113.68667 * 139.98943 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7356 1.6152 6 6 1.2654 -0.2558 2.7052 7 8 0.4069 -0.9934 3.1411 8 7 1.3935 0.9930 3.1956 9 6 2.4485 1.9512 2.8348 10 6 2.2063 3.2320 3.6608 11 6 1.3618 2.7194 4.8572 12 1 1.9996 2.2925 5.6313 13 6 0.4846 3.8357 5.4276 14 7 1.3349 4.8663 6.0284 15 6 0.7678 5.9709 6.6056 16 1 -0.3064 6.0826 6.6177 17 6 1.5735 6.9473 7.1754 18 7 2.8826 6.8115 7.1602 19 14 0.7999 8.4545 7.9622 20 1 -0.6782 8.3688 7.8483 21 1 1.1827 8.5161 9.3957 22 1 1.2803 9.6766 7.2686 23 6 0.4984 1.6247 4.1821 24 6 2.3522 -2.2642 1.5750 25 6 3.5202 -2.0865 2.5595 26 6 3.6776 -0.6652 1.9937 27 1 -0.3633 0.5476 0.8695 28 1 -0.3633 0.4792 -0.9091 29 1 -0.3634 -1.0269 0.0394 30 1 2.3929 2.1805 1.7706 31 1 3.4264 1.5342 3.0756 32 1 1.6468 3.9654 3.0801 33 1 3.1506 3.6519 4.0072 34 1 -0.1791 3.4236 6.1877 35 1 -0.1093 4.2761 4.6267 36 1 2.2997 4.7662 6.0172 37 1 3.4456 7.4938 7.5580 38 1 0.1694 0.8925 4.9195 39 1 -0.3603 2.0734 3.6825 40 1 1.5048 -2.8052 1.9960 41 1 2.6570 -2.6453 0.6002 42 1 4.3701 -2.7362 2.3506 43 1 3.2163 -2.1087 3.6060 44 1 4.3446 -0.6091 1.1335 45 1 3.9003 0.0857 2.7518 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690745748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:53 Heat of formation + Delta-G solvation = -53.415097 kcal Electronic energy + Delta-G solvation = -27600.091924 eV Core-core repulsion = 23746.814756 eV Total energy + Delta-G solvation = -3853.277167 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -41.06569 -38.66109 -37.45637 -37.27998 -36.44507 -34.76218 -32.34901 -30.39267 -29.97356 -29.26867 -27.51076 -26.31173 -25.23451 -23.43155 -22.44537 -21.08504 -20.13642 -20.04359 -18.66169 -18.20808 -17.09050 -16.80253 -16.54515 -16.44959 -16.01292 -15.87976 -14.80702 -14.70712 -14.40768 -13.91392 -13.71640 -13.55257 -13.53110 -13.22511 -13.12655 -12.95828 -12.90895 -12.80431 -12.62121 -12.55731 -12.48162 -12.18304 -11.78460 -11.47091 -11.35280 -11.19469 -10.95944 -10.88706 -10.70325 -10.56264 -10.45980 -10.36708 -10.10478 -10.00849 -9.73089 -8.91532 -8.77611 -6.96121 -5.80033 -3.08777 -0.51391 1.97495 2.35138 2.63343 3.08540 3.26850 3.41623 3.47530 3.49565 3.76460 3.90123 4.03061 4.23793 4.44953 4.52400 4.59990 4.68467 4.72546 4.86953 4.98293 5.08009 5.12377 5.32308 5.33734 5.44441 5.48116 5.52065 5.54463 5.57305 5.70076 5.82003 5.83434 5.97901 6.01277 6.09090 6.10990 6.36862 6.41815 6.66165 6.79164 7.23289 7.67731 7.74567 8.38748 9.50423 10.06914 10.41763 11.42868 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.023804 B = 0.002766 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.966845 B =10118.731665 C =10282.576852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.430 3.570 3 O -0.920 6.920 4 O -0.927 6.927 5 C -0.602 4.602 6 C 0.563 3.437 7 O -0.523 6.523 8 N -0.607 5.607 9 C 0.060 3.940 10 C -0.118 4.118 11 C -0.106 4.106 12 H 0.085 0.915 13 C 0.164 3.836 14 N -0.731 5.731 15 C -0.240 4.240 16 H 0.071 0.929 17 C -0.013 4.013 18 N -0.933 5.933 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.291 1.291 23 C 0.111 3.889 24 C -0.096 4.096 25 C -0.127 4.127 26 C -0.106 4.106 27 H 0.129 0.871 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.022 0.978 35 H 0.023 0.977 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.111 0.889 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.101 0.899 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.280 -18.913 -14.888 24.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.611 3.389 3 O -0.917 6.917 4 O -0.924 6.924 5 C -0.693 4.693 6 C 0.348 3.652 7 O -0.399 6.399 8 N -0.341 5.341 9 C -0.062 4.062 10 C -0.156 4.156 11 C -0.126 4.126 12 H 0.103 0.897 13 C 0.036 3.964 14 N -0.375 5.375 15 C -0.371 4.371 16 H 0.089 0.911 17 C -0.209 4.209 18 N -0.581 5.581 19 Si 0.738 3.262 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.218 1.218 23 C -0.011 4.011 24 C -0.135 4.135 25 C -0.165 4.165 26 C -0.144 4.144 27 H 0.147 0.853 28 H 0.152 0.848 29 H 0.153 0.847 30 H 0.126 0.874 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.040 0.960 35 H 0.041 0.959 36 H 0.218 0.782 37 H 0.065 0.935 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.118 0.882 41 H 0.130 0.870 42 H 0.101 0.899 43 H 0.107 0.893 44 H 0.120 0.880 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.302 -18.955 -15.282 24.350 hybrid contribution -0.593 0.723 1.101 1.445 sum -0.895 -18.232 -14.181 23.115 Atomic orbital electron populations 1.30209 1.25664 1.12274 1.11996 1.07780 0.78939 0.75806 0.76405 1.93554 1.79363 1.33311 1.85517 1.93600 1.79595 1.67261 1.51962 1.31578 1.06470 1.11764 1.19502 1.18278 0.83594 0.80737 0.82570 1.90720 1.35839 1.53822 1.59523 1.48528 1.29870 1.12703 1.42955 1.23034 0.90399 0.89820 1.02980 1.22637 1.01988 0.95294 0.95696 1.22583 0.97416 0.95484 0.97068 0.89661 1.20544 0.92590 0.88067 0.95170 1.42297 1.05477 1.20869 1.68853 1.19264 0.91808 0.96907 1.29103 0.91114 1.24740 0.95397 0.99051 1.01751 1.69662 1.02357 1.35584 1.50525 0.86116 0.78212 0.83048 0.78804 1.20557 1.21888 1.21843 1.22383 0.92829 0.95148 0.90754 1.22724 1.01175 0.87249 1.02310 1.22781 0.98418 0.95555 0.99735 1.22906 0.87762 1.00562 1.03169 0.85251 0.84764 0.84740 0.87431 0.90780 0.89892 0.89292 0.96036 0.95905 0.78194 0.93545 0.90045 0.90682 0.88244 0.87039 0.89931 0.89303 0.88036 0.88084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -4.86 10.05 101.05 1.02 -3.84 16 2 S 2.43 22.61 5.18 -107.50 -0.56 22.06 16 3 O -0.92 -10.70 15.02 -57.83 -0.87 -11.57 16 4 O -0.93 -10.34 16.98 -57.83 -0.98 -11.32 16 5 C -0.60 -5.54 0.77 -90.96 -0.07 -5.61 16 6 C 0.56 6.57 4.97 -10.99 -0.05 6.52 16 7 O -0.52 -7.38 16.29 5.55 0.09 -7.29 16 8 N -0.61 -7.30 3.33 -170.52 -0.57 -7.86 16 9 C 0.06 0.69 5.83 -3.07 -0.02 0.68 16 10 C -0.12 -1.64 6.13 -24.90 -0.15 -1.79 16 11 C -0.11 -1.57 3.10 -88.47 -0.27 -1.85 16 12 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 13 C 0.16 3.09 5.71 -4.04 -0.02 3.06 16 14 N -0.73 -17.69 5.45 -59.91 -0.33 -18.01 16 15 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 16 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 17 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 18 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 19 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 C 0.11 1.44 6.40 -2.53 -0.02 1.42 16 24 C -0.10 -0.75 7.09 -25.92 -0.18 -0.93 16 25 C -0.13 -0.94 7.80 -25.92 -0.20 -1.14 16 26 C -0.11 -0.84 6.70 -25.92 -0.17 -1.01 16 27 H 0.13 1.03 7.28 -51.93 -0.38 0.66 16 28 H 0.13 0.77 8.14 -51.92 -0.42 0.35 16 29 H 0.13 0.81 8.14 -51.92 -0.42 0.39 16 30 H 0.11 1.25 4.87 -51.93 -0.25 1.00 16 31 H 0.07 0.75 5.47 -51.93 -0.28 0.47 16 32 H 0.08 1.21 8.01 -51.93 -0.42 0.79 16 33 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.02 0.43 8.11 -51.93 -0.42 0.01 16 36 H 0.38 9.71 7.53 -40.82 -0.31 9.40 16 37 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.08 1.07 7.99 -51.93 -0.41 0.66 16 39 H 0.07 0.92 8.04 -51.92 -0.42 0.50 16 40 H 0.10 0.82 7.39 -51.93 -0.38 0.43 16 41 H 0.11 0.73 7.22 -51.93 -0.37 0.36 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.10 0.65 8.10 -51.93 -0.42 0.22 16 45 H 0.10 0.81 5.03 -51.93 -0.26 0.55 16 LS Contribution 364.39 15.07 5.49 5.49 Total: -1.00 -34.11 364.39 -9.26 -43.37 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -6.84 Total: 6.62 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -0.40 Total: -11.68 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.17 Total: -52.76 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -1.76 Total: -30.18 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 22.61 SS G_CDS: -0.56 Total: 22.06 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.11 -9.26 -43.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690745748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.045 kcal (2) G-P(sol) polarization free energy of solvation -34.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds