Wall clock time and date at job start Tue Mar 31 2020 05:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46494 * 120.00163 * 2 1 4 4 C 1.53001 * 109.47308 * 94.72387 * 3 2 1 5 5 H 1.09001 * 112.74000 * 45.60692 * 4 3 2 6 6 C 1.53501 * 113.51913 * 274.82135 * 4 3 2 7 7 C 1.53762 * 83.25464 * 218.97181 * 6 4 3 8 8 N 1.47067 * 87.89089 * 26.23630 * 7 6 4 9 9 C 1.36932 * 136.05639 * 152.95877 * 8 7 6 10 10 H 1.08003 * 119.99999 * 191.03858 * 9 8 7 11 11 C 1.38804 * 120.00330 * 11.04506 * 9 8 7 12 12 N 1.31618 * 120.00637 * 197.55482 * 11 9 8 13 13 Si 1.86811 * 119.99963 * 17.55192 * 11 9 8 14 14 H 1.48503 * 109.46929 * 273.41830 * 13 11 9 15 15 H 1.48497 * 109.46774 * 33.41634 * 13 11 9 16 16 H 1.48495 * 109.46983 * 153.41790 * 13 11 9 17 17 C 1.34779 * 119.99748 * 180.02562 * 2 1 3 18 18 O 1.21282 * 119.99658 * 185.33935 * 17 2 1 19 19 C 1.50696 * 120.00080 * 5.34152 * 17 2 1 20 20 C 1.53003 * 109.47082 * 179.97438 * 19 17 2 21 21 H 1.09000 * 110.28513 * 302.88362 * 20 19 17 22 22 C 1.54165 * 110.31896 * 180.66123 * 20 19 17 23 23 C 1.53876 * 108.70542 * 213.18949 * 22 20 19 24 24 C 1.55050 * 106.62237 * 47.18221 * 23 22 20 25 25 S 1.82920 * 110.31542 * 65.00097 * 20 19 17 26 26 O 1.42102 * 109.35172 * 234.42338 * 25 20 19 27 27 O 1.42097 * 109.35643 * 7.49602 * 25 20 19 28 28 H 1.08994 * 109.47454 * 89.99472 * 1 2 3 29 29 H 1.08995 * 109.47225 * 210.00217 * 1 2 3 30 30 H 1.09008 * 109.46926 * 329.99926 * 1 2 3 31 31 H 1.08997 * 109.47412 * 334.72211 * 3 2 1 32 32 H 1.09000 * 109.47605 * 214.71997 * 3 2 1 33 33 H 1.08999 * 114.20471 * 332.72338 * 6 4 3 34 34 H 1.08988 * 114.20931 * 105.35829 * 6 4 3 35 35 H 1.08999 * 113.46482 * 271.50134 * 7 6 4 36 36 H 1.09005 * 113.55190 * 140.98793 * 7 6 4 37 37 H 0.96991 * 120.00840 * 179.97438 * 12 11 9 38 38 H 1.09002 * 109.47226 * 300.00184 * 19 17 2 39 39 H 1.09004 * 109.47015 * 59.99634 * 19 17 2 40 40 H 1.09003 * 109.64602 * 333.04400 * 22 20 19 41 41 H 1.09003 * 109.64807 * 93.33568 * 22 20 19 42 42 H 1.08996 * 110.02964 * 287.89141 * 23 22 20 43 43 H 1.08999 * 110.06490 * 166.49246 * 23 22 20 44 44 H 1.09000 * 110.78910 * 199.29550 * 24 23 22 45 45 H 1.09002 * 110.95065 * 75.90663 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5554 1.6510 1.4376 5 1 2.9591 0.8144 2.0080 6 6 1.4353 2.4047 2.1680 7 6 2.6057 3.2206 2.7414 8 7 3.3691 2.8723 1.5336 9 6 4.3916 3.4347 0.8172 10 1 4.6513 3.0401 -0.1541 11 6 5.0944 4.5118 1.3392 12 7 5.8245 5.2677 0.5468 13 14 5.0041 4.8887 3.1667 14 1 3.8264 5.7522 3.4363 15 1 4.8726 3.6204 3.9277 16 1 6.2414 5.5931 3.5885 17 6 2.1388 -1.1673 -0.0005 18 8 3.3477 -1.1696 0.0972 19 6 1.3902 -2.4694 -0.1226 20 6 2.3834 -3.6330 -0.0977 21 1 3.1175 -3.5203 -0.8956 22 6 1.6388 -4.9755 -0.2382 23 6 2.3919 -6.0447 0.5727 24 6 2.6905 -5.4205 1.9602 25 16 3.2193 -3.7198 1.5270 26 8 4.6270 -3.6992 1.3340 27 8 2.6135 -2.7938 2.4184 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5139 31 1 1.5744 2.0480 -0.4388 32 1 3.1107 1.1610 -0.5853 33 1 0.7733 2.9682 1.5104 34 1 0.9019 1.8066 2.9066 35 1 3.0227 2.7978 3.6554 36 1 2.3927 4.2861 2.8281 37 1 6.3153 6.0206 0.9115 38 1 0.6939 -2.5677 0.7103 39 1 0.8374 -2.4840 -1.0619 40 1 0.6233 -4.8732 0.1446 41 1 1.6050 -5.2679 -1.2877 42 1 3.3244 -6.3048 0.0719 43 1 1.7705 -6.9326 0.6887 44 1 3.4941 -5.9595 2.4621 45 1 1.7939 -5.4008 2.5798 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691051109.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:01 Heat of formation + Delta-G solvation = -69.316363 kcal Electronic energy + Delta-G solvation = -27682.131535 eV Core-core repulsion = 23828.164838 eV Total energy + Delta-G solvation = -3853.966698 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.29683 -40.01142 -38.02338 -37.56964 -36.91462 -36.55364 -34.47316 -33.32387 -30.67118 -30.15310 -28.25323 -27.15920 -25.49809 -25.07552 -23.82453 -22.23476 -21.23308 -20.30681 -19.56983 -18.91931 -18.19975 -18.00192 -17.59450 -17.37408 -17.16904 -16.66694 -16.44364 -15.70215 -15.63873 -15.15291 -15.00344 -14.88132 -14.65581 -14.38095 -14.11111 -13.90360 -13.67163 -13.52210 -13.42294 -13.18914 -13.12370 -13.01258 -12.90175 -12.75245 -12.67306 -12.57703 -12.44883 -12.11659 -11.98290 -11.86207 -11.75591 -11.49536 -11.26317 -11.01351 -10.98227 -10.87073 -9.66824 -9.19878 -8.19100 -5.45997 -0.87868 1.21889 1.31040 1.39280 1.54308 1.75562 1.96768 2.36649 2.80909 2.95860 3.03145 3.09080 3.36233 3.50204 3.57952 3.67662 3.86994 3.92651 4.11143 4.14728 4.22182 4.26223 4.36708 4.40712 4.54368 4.56302 4.58917 4.62396 4.69722 4.78168 4.82106 4.87270 4.92173 4.95163 5.05053 5.06601 5.14406 5.19853 5.22272 5.39840 5.59877 6.11181 6.39166 6.48667 7.11805 7.39187 8.25152 9.02017 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.018875 B = 0.003478 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.071018 B = 8047.866983 C = 8574.316392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.604 5.604 3 C 0.130 3.870 4 C 0.125 3.875 5 H 0.020 0.980 6 C -0.110 4.110 7 C 0.085 3.915 8 N -0.645 5.645 9 C -0.210 4.210 10 H 0.061 0.939 11 C -0.046 4.046 12 N -0.965 5.965 13 Si 0.945 3.055 14 H -0.262 1.262 15 H -0.275 1.275 16 H -0.301 1.301 17 C 0.483 3.517 18 O -0.605 6.605 19 C -0.109 4.109 20 C -0.524 4.524 21 H 0.136 0.864 22 C -0.104 4.104 23 C -0.124 4.124 24 C -0.566 4.566 25 S 2.336 3.664 26 O -1.003 7.003 27 O -0.982 6.982 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.033 0.967 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.034 0.966 36 H 0.054 0.946 37 H 0.262 0.738 38 H 0.141 0.859 39 H 0.161 0.839 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.085 0.915 43 H 0.138 0.862 44 H 0.143 0.857 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.550 -27.621 -1.324 36.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.335 5.335 3 C 0.006 3.994 4 C 0.018 3.982 5 H 0.038 0.962 6 C -0.148 4.148 7 C -0.039 4.039 8 N -0.373 5.373 9 C -0.337 4.337 10 H 0.079 0.921 11 C -0.239 4.239 12 N -0.614 5.614 13 Si 0.773 3.227 14 H -0.188 1.188 15 H -0.200 1.200 16 H -0.229 1.229 17 C 0.273 3.727 18 O -0.487 6.487 19 C -0.149 4.149 20 C -0.637 4.637 21 H 0.154 0.846 22 C -0.143 4.143 23 C -0.162 4.162 24 C -0.699 4.699 25 S 2.527 3.473 26 O -1.000 7.000 27 O -0.979 6.979 28 H 0.103 0.897 29 H 0.121 0.879 30 H 0.104 0.896 31 H 0.122 0.878 32 H 0.052 0.948 33 H 0.130 0.870 34 H 0.119 0.881 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.159 0.841 39 H 0.179 0.821 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.103 0.897 43 H 0.156 0.844 44 H 0.161 0.839 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -22.089 -26.666 -0.904 34.638 hybrid contribution 1.418 0.451 0.524 1.578 sum -20.671 -26.214 -0.381 33.386 Atomic orbital electron populations 1.22322 0.75594 1.05708 1.04170 1.47887 1.09200 1.04510 1.71936 1.21389 0.96251 0.85448 0.96344 1.22572 0.90822 0.89076 0.95718 0.96218 1.23457 0.94344 0.97346 0.99635 1.22801 0.91833 0.99349 0.89933 1.46598 1.39647 1.22043 1.29003 1.18532 1.08116 1.09735 0.97367 0.92104 1.25455 0.98576 0.97962 1.01912 1.69893 1.36385 1.19301 1.35833 0.85791 0.76936 0.77840 0.82122 1.18797 1.20042 1.22900 1.21829 0.87843 0.87826 0.75160 1.90800 1.17451 1.88178 1.52262 1.21630 0.97687 0.85804 1.09768 1.29948 1.10102 1.03749 1.19897 0.84641 1.22224 1.00398 0.86472 1.05179 1.22427 1.03724 1.00823 0.89273 1.30556 1.13912 1.17502 1.07950 1.10421 0.75956 0.80603 0.80342 1.93509 1.31960 1.87891 1.86641 1.93505 1.78524 1.62463 1.63424 0.89740 0.87920 0.89560 0.87835 0.94841 0.86988 0.88117 0.94800 0.92758 0.92886 0.84094 0.82110 0.85883 0.85990 0.89675 0.84398 0.83921 0.81476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.83 10.18 127.77 1.30 2.13 16 2 N -0.60 -16.73 2.88 -846.79 -2.44 -19.17 16 3 C 0.13 4.94 5.25 86.38 0.45 5.40 16 4 C 0.13 5.48 4.28 41.79 0.18 5.66 16 5 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 6 C -0.11 -3.64 7.92 31.02 0.25 -3.40 16 7 C 0.09 3.80 5.65 83.27 0.47 4.27 16 8 N -0.65 -34.55 3.44 -713.31 -2.46 -37.00 16 9 C -0.21 -13.37 10.96 84.03 0.92 -12.45 16 10 H 0.06 4.23 8.06 -2.91 -0.02 4.20 16 11 C -0.05 -2.96 5.50 84.86 0.47 -2.50 16 12 N -0.97 -65.43 13.97 21.65 0.30 -65.13 16 13 Si 0.95 51.11 25.19 68.60 1.73 52.84 16 14 H -0.26 -13.05 6.80 99.48 0.68 -12.37 16 15 H -0.27 -14.79 6.22 99.48 0.62 -14.17 16 16 H -0.30 -16.25 7.11 99.48 0.71 -15.54 16 17 C 0.48 14.88 6.77 87.66 0.59 15.48 16 18 O -0.60 -26.96 14.48 -2.60 -0.04 -26.99 16 19 C -0.11 -1.63 3.42 29.85 0.10 -1.53 16 20 C -0.52 -8.34 2.80 30.99 0.09 -8.25 16 21 H 0.14 2.60 8.04 -2.39 -0.02 2.58 16 22 C -0.10 -0.34 5.94 31.28 0.19 -0.15 16 23 C -0.12 -0.51 6.48 31.59 0.20 -0.31 16 24 C -0.57 -5.75 7.31 72.68 0.53 -5.22 16 25 S 2.34 61.05 4.68 -56.49 -0.26 60.79 16 26 O -1.00 -39.32 18.15 -127.47 -2.31 -41.63 16 27 O -0.98 -33.11 16.36 -125.57 -2.05 -35.16 16 28 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.10 0.71 6.48 -2.39 -0.02 0.70 16 30 H 0.09 1.06 7.96 -2.38 -0.02 1.04 16 31 H 0.10 3.42 7.80 -2.39 -0.02 3.40 16 32 H 0.03 1.58 7.65 -2.39 -0.02 1.57 16 33 H 0.11 3.10 7.96 -2.39 -0.02 3.08 16 34 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.03 1.56 7.12 -2.39 -0.02 1.54 16 36 H 0.05 2.39 6.60 -2.38 -0.02 2.38 16 37 H 0.26 16.80 8.31 -92.72 -0.77 16.03 16 38 H 0.14 1.25 7.01 -2.39 -0.02 1.24 16 39 H 0.16 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.12 -0.38 7.86 -2.39 -0.02 -0.40 16 41 H 0.12 -0.08 8.14 -2.39 -0.02 -0.10 16 42 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.14 -0.32 8.14 -2.39 -0.02 -0.34 16 44 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.17 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -108.91 365.86 -0.94 -109.85 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: 0.86 Total: 2.49 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: 5.74 Total: -0.87 kcal Atomic # 7 Polarization: -116.71 SS G_CDS: -4.59 Total: -121.30 kcal Atomic # 8 Polarization: -99.38 SS G_CDS: -4.41 Total: -103.79 kcal Atomic # 14 Polarization: 51.11 SS G_CDS: 1.73 Total: 52.84 kcal Atomic # 16 Polarization: 61.05 SS G_CDS: -0.26 Total: 60.79 kcal Total: -108.91 -0.94 -109.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691051109.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.532 kcal (2) G-P(sol) polarization free energy of solvation -108.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -109.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds