Wall clock time and date at job start Tue Mar 31 2020 05:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81399 * 109.46688 * 2 1 4 4 O 1.42093 * 108.58333 * 65.51451 * 3 2 1 5 5 O 1.42105 * 108.57966 * 294.48134 * 3 2 1 6 6 C 1.81402 * 101.91963 * 179.97438 * 3 2 1 7 7 C 1.50700 * 109.47482 * 179.97438 * 6 3 2 8 8 O 1.21276 * 119.99514 * 0.02562 * 7 6 3 9 9 N 1.34769 * 120.00448 * 179.97438 * 7 6 3 10 10 C 1.44511 * 116.62922 * 354.23928 * 9 7 6 11 11 C 1.51634 * 112.65313 * 154.60174 * 10 9 7 12 12 C 1.51328 * 111.98309 * 42.75494 * 11 10 9 13 13 C 1.50705 * 113.54364 * 304.61287 * 12 11 10 14 14 H 1.08999 * 109.33193 * 169.06578 * 13 12 11 15 15 C 1.54175 * 110.50964 * 289.38958 * 13 12 11 16 16 N 1.46928 * 106.26648 * 151.10156 * 15 13 12 17 17 C 1.36937 * 125.38061 * 162.11080 * 16 15 13 18 18 H 1.07997 * 119.99648 * 0.02562 * 17 16 15 19 19 C 1.38815 * 120.00070 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99699 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99967 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47268 * 60.00165 * 21 19 17 23 23 H 1.48500 * 109.47105 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46949 * 300.00089 * 21 19 17 25 25 C 1.46821 * 109.24441 * 342.14945 * 16 15 13 26 26 C 1.44097 * 116.63497 * 173.98111 * 9 7 6 27 27 H 1.08994 * 109.11121 * 73.86590 * 26 9 7 28 28 H 1.09004 * 109.47224 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47563 * 299.99822 * 1 2 3 30 30 H 1.09001 * 109.47734 * 60.00542 * 1 2 3 31 31 H 1.08992 * 109.47231 * 239.99970 * 2 1 3 32 32 H 1.09001 * 109.47104 * 119.99876 * 2 1 3 33 33 H 1.09001 * 109.47391 * 300.00040 * 6 3 2 34 34 H 1.09010 * 109.47129 * 59.99769 * 6 3 2 35 35 H 1.09001 * 108.84778 * 275.41666 * 10 9 7 36 36 H 1.09005 * 108.84645 * 33.88762 * 10 9 7 37 37 H 1.09003 * 108.97939 * 163.40420 * 11 10 9 38 38 H 1.09001 * 108.97426 * 282.19369 * 11 10 9 39 39 H 1.09000 * 108.66597 * 65.66056 * 12 11 10 40 40 H 1.08994 * 108.66698 * 183.69647 * 12 11 10 41 41 H 1.09001 * 110.09750 * 270.29563 * 15 13 12 42 42 H 1.08993 * 110.09756 * 31.83742 * 15 13 12 43 43 H 0.97006 * 119.99364 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.84149 * 120.40311 * 25 16 15 45 45 H 1.08996 * 109.84116 * 241.41411 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1345 1.7103 0.0000 4 8 1.7591 2.3233 1.2257 5 8 1.7591 2.3232 -1.2259 6 6 3.9328 1.4720 0.0008 7 6 4.6175 2.8145 0.0002 8 8 3.9573 3.8318 -0.0001 9 7 5.9634 2.8846 0.0012 10 6 6.6770 1.6349 0.1324 11 6 8.0682 1.6909 -0.4682 12 6 8.7812 2.9812 -0.1264 13 6 8.0133 4.2162 -0.5216 14 1 8.4858 5.0924 -0.0774 15 6 7.9924 4.3717 -2.0553 16 7 6.7473 5.0808 -2.3802 17 6 6.4866 5.7255 -3.5598 18 1 7.2294 5.7385 -4.3436 19 6 5.2672 6.3615 -3.7485 20 7 4.3618 6.3452 -2.7933 21 14 4.9114 7.2403 -5.3579 22 1 4.9871 6.2697 -6.4792 23 1 3.5512 7.8341 -5.3075 24 1 5.9134 8.3164 -5.5663 25 6 5.8269 4.9897 -1.2399 26 6 6.5419 4.1974 -0.1344 27 1 6.4170 4.7409 0.8020 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.2252 0.9151 0.8910 34 1 4.2259 0.9147 -0.8890 35 1 6.7601 1.3862 1.1904 36 1 6.1097 0.8511 -0.3696 37 1 8.6520 0.8520 -0.0892 38 1 7.9899 1.6069 -1.5521 39 1 8.9566 3.0085 0.9490 40 1 9.7443 2.9932 -0.6367 41 1 8.8523 4.9551 -2.3844 42 1 8.0012 3.3912 -2.5313 43 1 3.5095 6.7893 -2.9254 44 1 5.5810 5.9895 -0.8822 45 1 4.9176 4.4683 -1.5391 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754874865.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:03 Heat of formation + Delta-G solvation = -57.133398 kcal Electronic energy + Delta-G solvation = -28403.627661 eV Core-core repulsion = 24550.189257 eV Total energy + Delta-G solvation = -3853.438405 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -40.67529 -37.89434 -36.80313 -35.81761 -35.51752 -33.42004 -33.22799 -32.14554 -30.66528 -29.36897 -26.99791 -25.64844 -24.36094 -23.96040 -22.20588 -21.03963 -19.64570 -18.67886 -17.92901 -17.48780 -16.76734 -16.49429 -16.27575 -16.06137 -15.62696 -15.14407 -14.65797 -14.49417 -14.30114 -14.02925 -13.75361 -13.58141 -13.39263 -13.26114 -12.70093 -12.68163 -12.54528 -12.26873 -11.84303 -11.81552 -11.73660 -11.63659 -11.41041 -11.14927 -10.93909 -10.87747 -10.76722 -10.61015 -10.45752 -10.37578 -10.25240 -10.04580 -9.90252 -9.58220 -9.28875 -8.43613 -8.10546 -6.65357 -5.50650 -2.88421 -0.08936 2.76118 2.80123 3.16828 3.51019 3.54226 3.58371 3.80549 3.98281 4.38470 4.45512 4.47831 4.62930 4.76482 4.83504 4.92487 4.97387 5.03012 5.05981 5.16524 5.33225 5.39464 5.40909 5.48734 5.66053 5.69116 5.72038 5.77060 5.87207 5.94601 6.05081 6.17654 6.19405 6.43068 6.58025 6.70867 6.74610 7.04163 7.46829 7.76117 7.84154 8.11707 8.35416 8.49644 9.37898 9.98863 10.62811 11.57980 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.010696 B = 0.005285 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.205832 B = 5296.724311 C = 7296.453156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.626 4.626 3 S 2.448 3.552 4 O -0.921 6.921 5 O -0.906 6.906 6 C -0.659 4.659 7 C 0.525 3.475 8 O -0.492 6.492 9 N -0.578 5.578 10 C 0.112 3.888 11 C -0.129 4.129 12 C -0.102 4.102 13 C -0.102 4.102 14 H 0.082 0.918 15 C 0.142 3.858 16 N -0.606 5.606 17 C -0.242 4.242 18 H 0.075 0.925 19 C -0.003 4.003 20 N -0.905 5.905 21 Si 0.909 3.091 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.286 1.286 25 C 0.166 3.834 26 C 0.127 3.873 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.131 0.869 32 H 0.129 0.871 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.032 0.968 42 H 0.014 0.986 43 H 0.255 0.745 44 H 0.056 0.944 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.128 -18.627 9.552 21.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.754 4.754 3 S 2.623 3.377 4 O -0.919 6.919 5 O -0.903 6.903 6 C -0.787 4.787 7 C 0.309 3.691 8 O -0.366 6.366 9 N -0.311 5.311 10 C -0.012 4.012 11 C -0.166 4.166 12 C -0.140 4.140 13 C -0.122 4.122 14 H 0.100 0.900 15 C 0.016 3.984 16 N -0.334 5.334 17 C -0.371 4.371 18 H 0.093 0.907 19 C -0.201 4.201 20 N -0.551 5.551 21 Si 0.739 3.261 22 H -0.213 1.213 23 H -0.215 1.215 24 H -0.213 1.213 25 C 0.041 3.959 26 C 0.024 3.976 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.171 0.829 34 H 0.174 0.826 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.050 0.950 42 H 0.031 0.969 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.187 -17.147 9.477 19.627 hybrid contribution 0.557 -0.605 -0.874 1.200 sum 1.744 -17.752 8.603 19.804 Atomic orbital electron populations 1.21503 0.90300 1.04619 1.04060 1.30391 1.07751 1.26028 1.11228 1.07669 0.76696 0.77215 0.76102 1.93565 1.80026 1.72234 1.46027 1.93645 1.79612 1.71703 1.45355 1.30922 1.28617 1.06663 1.12502 1.19091 0.83547 0.88129 0.78326 1.90973 1.63884 1.35045 1.46713 1.46581 1.05039 1.07327 1.72196 1.20868 0.94156 0.85896 1.00241 1.21133 0.94832 0.98417 1.02268 1.20489 0.98905 0.93676 1.00947 1.21328 0.93989 0.98046 0.98828 0.89969 1.21368 0.90853 0.95241 0.90959 1.44359 1.12056 1.62265 1.14674 1.18891 0.99686 1.27264 0.91210 0.90716 1.24864 0.96570 1.00723 0.97913 1.69971 1.06834 1.46832 1.31440 0.86269 0.77206 0.79448 0.83171 1.21287 1.21541 1.21292 1.21722 0.92561 0.97819 0.83754 1.21189 0.93737 0.81462 1.01202 0.91912 0.90223 0.90750 0.90593 0.85037 0.85211 0.82928 0.82583 0.92511 0.90904 0.90716 0.91008 0.92409 0.91398 0.94955 0.96854 0.93386 0.92583 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.92 37.16 0.37 -0.85 16 2 C -0.63 -4.83 6.53 37.16 0.24 -4.58 16 3 S 2.45 34.31 3.96 -107.50 -0.43 33.89 16 4 O -0.92 -16.02 17.94 -59.53 -1.07 -17.09 16 5 O -0.91 -17.66 17.95 -59.53 -1.07 -18.73 16 6 C -0.66 -7.83 4.64 36.01 0.17 -7.66 16 7 C 0.52 9.81 6.79 -10.99 -0.07 9.74 16 8 O -0.49 -11.90 12.95 2.55 0.03 -11.86 16 9 N -0.58 -9.90 3.09 -170.33 -0.53 -10.42 16 10 C 0.11 1.30 5.69 -5.80 -0.03 1.27 16 11 C -0.13 -1.42 5.83 -28.27 -0.16 -1.59 16 12 C -0.10 -1.27 5.17 -28.72 -0.15 -1.42 16 13 C -0.10 -1.76 3.05 -91.58 -0.28 -2.04 16 14 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 15 C 0.14 2.98 6.65 -3.19 -0.02 2.96 16 16 N -0.61 -16.30 3.39 -171.51 -0.58 -16.89 16 17 C -0.24 -7.11 10.26 -15.06 -0.15 -7.27 16 18 H 0.07 2.10 7.83 -52.49 -0.41 1.69 16 19 C 0.00 -0.08 5.48 -17.43 -0.10 -0.18 16 20 N -0.91 -28.98 10.26 55.49 0.57 -28.41 16 21 Si 0.91 23.40 29.55 -169.99 -5.02 18.38 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 23 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 25 C 0.17 4.40 4.13 -3.52 -0.01 4.38 16 26 C 0.13 2.56 3.09 -69.30 -0.21 2.35 16 27 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.13 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.13 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.15 1.04 7.91 -51.92 -0.41 0.63 16 34 H 0.16 1.35 7.38 -51.92 -0.38 0.97 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.67 6.08 -51.93 -0.32 0.35 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.90 6.99 -51.93 -0.36 0.53 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.77 8.10 -51.93 -0.42 0.34 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.01 0.28 6.69 -51.93 -0.35 -0.06 16 43 H 0.26 8.06 8.31 -40.82 -0.34 7.73 16 44 H 0.06 1.69 7.37 -51.93 -0.38 1.31 16 45 H 0.08 2.31 4.71 -51.93 -0.24 2.07 16 LS Contribution 358.59 15.07 5.40 5.40 Total: -1.00 -42.18 358.59 -10.17 -52.35 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -7.06 Total: -1.74 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -0.42 Total: -4.88 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -0.54 Total: -55.72 kcal Atomic # 8 Polarization: -45.58 SS G_CDS: -2.10 Total: -47.68 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -5.02 Total: 18.38 kcal Atomic # 16 Polarization: 34.31 SS G_CDS: -0.43 Total: 33.89 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -42.18 -10.17 -52.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754874865.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.781 kcal (2) G-P(sol) polarization free energy of solvation -42.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds