Wall clock time and date at job start Tue Mar 31 2020 06:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 110.99980 * 2 1 4 4 C 1.50696 * 109.46971 * 66.04881 * 3 2 1 5 5 O 1.21274 * 120.00103 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99909 * 179.97438 * 4 3 2 7 7 C 1.46502 * 120.00170 * 179.97438 * 6 4 3 8 8 C 1.50697 * 109.46935 * 179.97438 * 7 6 4 9 9 H 1.08002 * 120.00357 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99467 * 180.02562 * 8 7 6 11 11 N 1.31510 * 120.00521 * 0.02562 * 10 8 7 12 12 Si 1.86809 * 119.99658 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47258 * 60.00294 * 12 10 8 14 14 H 1.48501 * 109.46897 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47159 * 299.99961 * 12 10 8 16 16 C 1.46904 * 110.99909 * 236.04731 * 2 1 3 17 17 C 1.50706 * 109.46891 * 293.95201 * 16 2 1 18 18 N 1.29830 * 118.31791 * 0.02562 * 17 16 2 19 19 C 1.35655 * 121.62165 * 180.02562 * 18 17 16 20 20 C 1.39636 * 121.65575 * 179.97438 * 19 18 17 21 21 C 1.37668 * 119.68891 * 180.02562 * 20 19 18 22 22 C 1.38881 * 120.81853 * 0.02562 * 21 20 19 23 23 C 1.37767 * 120.56958 * 359.92573 * 22 21 20 24 24 C 1.39336 * 119.51575 * 0.09772 * 23 22 21 25 25 C 1.47048 * 121.93216 * 179.64853 * 24 23 22 26 26 O 1.21721 * 121.30024 * 0.27263 * 25 24 23 27 27 N 1.35350 * 117.40183 * 179.72717 * 25 24 23 28 28 H 0.97001 * 119.69487 * 180.25380 * 27 25 24 29 29 H 1.08999 * 109.47260 * 183.95486 * 1 2 3 30 30 H 1.08993 * 109.46886 * 303.95376 * 1 2 3 31 31 H 1.09003 * 109.47022 * 63.95454 * 1 2 3 32 32 H 1.09005 * 109.46795 * 186.04798 * 3 2 1 33 33 H 1.08999 * 109.46972 * 306.04437 * 3 2 1 34 34 H 0.97005 * 119.99816 * 359.97438 * 6 4 3 35 35 H 1.09002 * 109.47098 * 300.00248 * 7 6 4 36 36 H 1.08999 * 109.46584 * 60.00183 * 7 6 4 37 37 H 0.97005 * 120.00604 * 179.97438 * 11 10 8 38 38 H 1.08998 * 109.46841 * 173.95741 * 16 2 1 39 39 H 1.08991 * 109.47519 * 53.95328 * 16 2 1 40 40 H 1.08004 * 120.15679 * 359.97438 * 20 19 18 41 41 H 1.07995 * 119.58900 * 179.97438 * 21 20 19 42 42 H 1.08001 * 119.71622 * 180.02562 * 22 21 20 43 43 H 1.07997 * 120.24166 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 8 1.0048 1.4456 2.1407 6 7 2.0189 3.3198 1.5237 7 6 1.6700 3.9769 2.7858 8 6 2.2112 5.3833 2.7863 9 1 2.7599 5.7511 1.9318 10 6 2.0060 6.2005 3.8777 11 7 1.3383 5.7525 4.9184 12 14 2.6763 7.9441 3.8781 13 1 2.0850 8.7020 2.7462 14 1 2.3237 8.6097 5.1579 15 1 4.1535 7.9066 3.7307 16 6 1.9954 -0.7660 -1.1376 17 6 1.6369 -2.2205 -0.9728 18 7 0.9594 -2.5726 0.0772 19 6 0.6013 -3.8632 0.2928 20 6 -0.1268 -4.2428 1.4221 21 6 -0.4683 -5.5645 1.6007 22 6 -0.0970 -6.5272 0.6712 23 6 0.6208 -6.1771 -0.4515 24 6 0.9768 -4.8449 -0.6508 25 6 1.7487 -4.4136 -1.8257 26 8 2.1035 -5.2090 -2.6761 27 7 2.0396 -3.0958 -1.9306 28 1 2.5440 -2.7743 -2.6942 29 1 -0.3634 -1.0252 0.0709 30 1 -0.3633 0.5739 0.8524 31 1 -0.3633 0.4512 -0.9233 32 1 3.0798 1.3443 -0.1083 33 1 1.5611 1.9273 -0.8309 34 1 2.5249 3.8008 0.8502 35 1 0.5856 4.0044 2.8934 36 1 2.1036 3.4207 3.6169 37 1 1.1942 6.3273 5.6864 38 1 3.0797 -0.6611 -1.1756 39 1 1.5611 -0.3873 -2.0628 40 1 -0.4201 -3.5032 2.1525 41 1 -1.0311 -5.8564 2.4750 42 1 -0.3747 -7.5589 0.8289 43 1 0.9064 -6.9301 -1.1711 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027347151.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:46 Heat of formation + Delta-G solvation = -1.910381 kcal Electronic energy + Delta-G solvation = -26932.266197 eV Core-core repulsion = 22978.071242 eV Total energy + Delta-G solvation = -3954.194955 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.83534 -39.24638 -38.64442 -38.15067 -36.26498 -34.10871 -33.91045 -32.33024 -31.56651 -30.84097 -28.69722 -28.02740 -26.67757 -24.93089 -24.25970 -22.64260 -22.21303 -21.46000 -19.66021 -19.58957 -18.99566 -17.84388 -17.02526 -16.41255 -16.13850 -15.83487 -15.59777 -15.46833 -15.21354 -15.00000 -14.69174 -14.45553 -14.19232 -14.06437 -13.81128 -13.63569 -13.04655 -12.87984 -12.52819 -12.26925 -12.21389 -12.06612 -11.93424 -11.78636 -11.49571 -11.21583 -10.99279 -10.83323 -10.64357 -10.57710 -10.31334 -9.93032 -9.43483 -9.41045 -9.01394 -8.72636 -8.31701 -8.27257 -7.84423 -6.16614 -4.23695 0.23198 0.54097 1.91757 2.23380 2.48443 3.24540 3.29497 3.30793 3.39682 3.51973 3.56281 3.70355 4.00246 4.24070 4.34751 4.43220 4.54825 4.66013 4.86144 4.90209 4.95460 5.06364 5.19223 5.22493 5.30200 5.33712 5.56587 5.63083 5.67322 5.74662 5.84948 5.88843 6.05362 6.11692 6.19970 6.46848 6.52657 6.88434 6.99550 7.32913 7.38907 7.46224 7.53200 7.67373 7.70013 7.97623 8.64269 8.79443 9.14120 9.43139 10.93441 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.024809 B = 0.002098 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.368986 B =13341.693517 C =14253.300717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.498 5.498 3 C 0.033 3.967 4 C 0.499 3.501 5 O -0.532 6.532 6 N -0.716 5.716 7 C 0.252 3.748 8 C -0.544 4.544 9 H 0.062 0.938 10 C 0.064 3.936 11 N -0.885 5.885 12 Si 0.903 3.097 13 H -0.276 1.276 14 H -0.285 1.285 15 H -0.275 1.275 16 C 0.097 3.903 17 C 0.392 3.608 18 N -0.477 5.477 19 C 0.155 3.845 20 C -0.104 4.104 21 C -0.074 4.074 22 C -0.142 4.142 23 C -0.044 4.044 24 C -0.204 4.204 25 C 0.554 3.446 26 O -0.518 6.518 27 N -0.652 5.652 28 H 0.417 0.583 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.010 0.990 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.389 0.611 35 H 0.026 0.974 36 H 0.027 0.973 37 H 0.266 0.734 38 H 0.110 0.890 39 H 0.069 0.931 40 H 0.145 0.855 41 H 0.134 0.866 42 H 0.131 0.869 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.636 -19.757 -14.602 24.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.221 5.221 3 C -0.098 4.098 4 C 0.283 3.717 5 O -0.410 6.410 6 N -0.365 5.365 7 C 0.132 3.868 8 C -0.582 4.582 9 H 0.080 0.920 10 C -0.140 4.140 11 N -0.522 5.522 12 Si 0.731 3.269 13 H -0.201 1.201 14 H -0.211 1.211 15 H -0.201 1.201 16 C -0.033 4.033 17 C 0.123 3.877 18 N -0.197 5.197 19 C 0.045 3.955 20 C -0.124 4.124 21 C -0.093 4.093 22 C -0.160 4.160 23 C -0.064 4.064 24 C -0.209 4.209 25 C 0.346 3.654 26 O -0.394 6.394 27 N -0.297 5.297 28 H 0.255 0.745 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.029 0.971 32 H 0.118 0.882 33 H 0.078 0.922 34 H 0.221 0.779 35 H 0.044 0.956 36 H 0.045 0.955 37 H 0.076 0.924 38 H 0.128 0.872 39 H 0.087 0.913 40 H 0.162 0.838 41 H 0.152 0.848 42 H 0.149 0.851 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.236 -20.526 -13.021 24.339 hybrid contribution 0.863 1.206 -1.857 2.376 sum -0.372 -19.320 -14.878 24.387 Atomic orbital electron populations 1.22781 0.85306 1.04345 1.00747 1.61337 1.10010 1.11647 1.39142 1.22075 1.01583 0.89086 0.97022 1.20168 0.80874 0.82398 0.88307 1.90653 1.39809 1.64135 1.46360 1.46447 1.55803 1.12479 1.21815 1.19067 0.96426 0.91402 0.79946 1.21192 1.36830 0.97292 1.02930 0.91992 1.24952 0.94963 0.98944 0.95164 1.69960 1.39445 1.36877 1.05948 0.86484 0.79343 0.83688 0.77433 1.20104 1.21090 1.20083 1.21111 1.01925 0.85854 0.94419 1.22832 0.88490 0.92769 0.83564 1.68805 1.16837 1.16290 1.17779 1.18992 0.94780 0.87804 0.93887 1.20993 0.98185 0.96621 0.96554 1.21346 0.96929 0.92454 0.98602 1.21188 1.00115 1.00102 0.94592 1.20980 0.94419 0.94059 0.96893 1.20570 1.06701 0.96469 0.97191 1.18380 0.79509 0.81011 0.86450 1.90896 1.53873 1.52133 1.42452 1.44417 1.51707 1.08783 1.24791 0.74463 0.89382 0.88825 0.97125 0.88249 0.92229 0.77894 0.95633 0.95537 0.92387 0.87233 0.91327 0.83768 0.84789 0.85068 0.84703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 8.80 60.06 0.53 0.74 16 2 N -0.50 -6.26 4.16 -245.83 -1.02 -7.28 16 3 C 0.03 0.41 5.45 -4.98 -0.03 0.39 16 4 C 0.50 9.31 7.52 -10.99 -0.08 9.22 16 5 O -0.53 -12.25 14.33 5.56 0.08 -12.17 16 6 N -0.72 -14.27 5.55 -61.47 -0.34 -14.61 16 7 C 0.25 6.53 5.43 -5.19 -0.03 6.50 16 8 C -0.54 -14.46 9.28 -34.44 -0.32 -14.78 16 9 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 10 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 11 N -0.89 -25.82 13.29 55.43 0.74 -25.08 16 12 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 13 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 14 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 16 C 0.10 0.79 5.37 -4.97 -0.03 0.77 16 17 C 0.39 3.89 7.37 -155.22 -1.14 2.75 16 18 N -0.48 -5.96 7.06 -8.19 -0.06 -6.02 16 19 C 0.15 1.87 6.63 -84.51 -0.56 1.31 16 20 C -0.10 -1.10 10.03 -39.27 -0.39 -1.50 16 21 C -0.07 -0.61 10.00 -39.55 -0.40 -1.00 16 22 C -0.14 -1.13 10.02 -39.52 -0.40 -1.52 16 23 C -0.04 -0.43 9.68 -39.35 -0.38 -0.81 16 24 C -0.20 -2.37 5.89 -104.78 -0.62 -2.98 16 25 C 0.55 6.46 7.99 -12.43 -0.10 6.36 16 26 O -0.52 -7.18 17.48 5.17 0.09 -7.09 16 27 N -0.65 -5.67 5.27 -10.46 -0.06 -5.73 16 28 H 0.42 2.30 8.75 -40.82 -0.36 1.94 16 29 H 0.09 1.18 5.64 -51.93 -0.29 0.89 16 30 H 0.09 1.59 5.82 -51.93 -0.30 1.28 16 31 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.10 0.98 7.93 -51.93 -0.41 0.57 16 33 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 34 H 0.39 6.49 8.32 -40.82 -0.34 6.15 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.11 0.63 7.93 -51.93 -0.41 0.22 16 39 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 40 H 0.14 1.50 8.06 -52.48 -0.42 1.07 16 41 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 43 H 0.14 1.21 7.83 -52.49 -0.41 0.80 16 LS Contribution 365.89 15.07 5.51 5.51 Total: -1.00 -35.72 365.89 -9.56 -45.28 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -5.44 Total: 4.59 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: -4.04 Total: 7.07 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.74 Total: -58.71 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: 0.17 Total: -19.26 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.72 -9.56 -45.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027347151.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.367 kcal (2) G-P(sol) polarization free energy of solvation -35.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds