Wall clock time and date at job start Tue Mar 31 2020 05:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47361 * 2 1 4 4 N 1.46501 * 109.47415 * 120.00593 * 2 1 3 5 5 C 1.46502 * 119.99615 * 300.00169 * 4 2 1 6 6 C 1.50705 * 109.46685 * 269.99651 * 5 4 2 7 7 H 1.08003 * 120.00428 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99941 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99924 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99970 * 359.97438 * 8 6 5 11 11 H 1.48494 * 109.47249 * 90.00258 * 10 8 6 12 12 H 1.48499 * 109.46774 * 210.00363 * 10 8 6 13 13 H 1.48502 * 109.47035 * 330.00183 * 10 8 6 14 14 C 1.34774 * 120.00481 * 119.99480 * 4 2 1 15 15 O 1.21272 * 120.00177 * 179.97438 * 14 4 2 16 16 C 1.50703 * 119.99936 * 0.02562 * 14 4 2 17 17 N 1.46493 * 109.47146 * 179.97438 * 16 14 4 18 18 N 1.39738 * 119.96019 * 269.72355 * 17 16 14 19 19 N 1.28348 * 122.95577 * 180.30743 * 18 17 16 20 20 C 1.35632 * 121.96564 * 359.93548 * 19 18 17 21 21 C 1.39732 * 121.33099 * 179.97438 * 20 19 18 22 22 C 1.37641 * 119.74275 * 180.02562 * 21 20 19 23 23 C 1.38882 * 120.80098 * 0.02562 * 22 21 20 24 24 C 1.37745 * 120.54097 * 0.02562 * 23 22 21 25 25 C 1.39375 * 119.56687 * 359.97438 * 24 23 22 26 26 C 1.35405 * 119.95905 * 90.00317 * 17 16 14 27 27 O 1.21736 * 121.31327 * 359.74039 * 26 17 16 28 28 H 1.09005 * 109.47152 * 299.99319 * 1 2 3 29 29 H 1.08998 * 109.47689 * 59.99422 * 1 2 3 30 30 H 1.09006 * 109.47501 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46867 * 240.00233 * 2 1 3 32 32 H 1.09002 * 109.46994 * 180.02562 * 3 2 1 33 33 H 1.08992 * 109.47239 * 300.00428 * 3 2 1 34 34 H 1.09005 * 109.46431 * 60.00239 * 3 2 1 35 35 H 1.08997 * 109.47212 * 29.99316 * 5 4 2 36 36 H 1.09001 * 109.47261 * 150.00193 * 5 4 2 37 37 H 0.97000 * 119.99611 * 179.97438 * 9 8 6 38 38 H 1.09004 * 109.46947 * 59.99399 * 16 14 4 39 39 H 1.09001 * 109.46820 * 299.99930 * 16 14 4 40 40 H 1.08003 * 120.13386 * 0.06189 * 21 20 19 41 41 H 1.08000 * 119.59842 * 180.02562 * 22 21 20 42 42 H 1.07998 * 119.72756 * 180.02562 * 23 22 21 43 43 H 1.08001 * 120.21587 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.6644 -0.1903 2.5267 6 6 2.7032 0.8016 2.9830 7 1 3.5433 1.0355 2.3458 8 6 2.5818 1.4098 4.2144 9 7 3.4881 2.2757 4.6124 10 14 1.1292 1.0047 5.3169 11 1 1.4782 -0.1412 6.1945 12 1 0.7984 2.1861 6.1536 13 1 -0.0436 0.6474 4.4791 14 6 2.7931 -1.7865 1.0724 15 8 3.1978 -2.3580 2.0625 16 6 3.1576 -2.3011 -0.2964 17 7 4.0002 -3.4919 -0.1620 18 7 5.3901 -3.3603 -0.1036 19 7 6.1823 -4.3640 0.0079 20 6 5.7220 -5.6378 0.0790 21 6 6.5966 -6.7208 0.1997 22 6 6.0938 -8.0002 0.2687 23 6 4.7250 -8.2300 0.2192 24 6 3.8427 -7.1790 0.0994 25 6 4.3312 -5.8756 0.0280 26 6 3.4314 -4.7192 -0.1004 27 8 2.2232 -4.8598 -0.1496 28 1 -0.3634 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8932 -0.5138 -0.8901 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6766 1.9562 0.8901 35 1 0.6904 0.2972 2.4843 36 1 1.6238 -1.0229 3.2291 37 1 3.4024 2.7038 5.4786 38 1 3.7028 -1.5302 -0.8410 39 1 2.2494 -2.5578 -0.8417 40 1 7.6630 -6.5547 0.2394 41 1 6.7719 -8.8355 0.3624 42 1 4.3493 -9.2410 0.2751 43 1 2.7793 -7.3637 0.0610 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053514261.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:35 Heat of formation + Delta-G solvation = 36.646400 kcal Electronic energy + Delta-G solvation = -28345.912375 eV Core-core repulsion = 24393.389367 eV Total energy + Delta-G solvation = -3952.523008 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.48819 -39.56710 -38.55290 -37.84493 -36.17571 -34.44627 -32.75938 -31.85108 -31.22773 -31.08798 -29.46709 -27.32994 -26.79262 -25.61128 -24.48923 -22.57880 -22.33603 -21.49910 -19.79750 -19.34022 -18.30092 -17.39819 -16.98937 -16.88452 -16.08376 -15.79285 -15.47420 -15.35063 -14.91432 -14.66425 -14.32674 -14.02806 -13.83181 -13.64238 -13.50781 -12.95993 -12.92619 -12.77052 -12.54268 -12.48420 -12.26236 -12.02612 -11.88826 -11.72620 -11.46264 -11.01790 -10.91929 -10.78242 -10.56190 -10.52264 -10.39662 -10.25546 -10.11708 -9.59359 -9.48512 -9.20073 -8.60494 -8.57551 -7.80713 -6.07705 -4.05442 -0.23176 0.40818 1.65505 1.72984 2.37253 3.13123 3.28599 3.34425 3.37432 3.43669 3.48188 3.70806 3.76929 4.25619 4.39966 4.41348 4.73173 4.75739 4.78426 4.96822 5.04018 5.09354 5.16281 5.25282 5.38427 5.44968 5.48997 5.53697 5.64008 5.65847 5.89031 5.92119 6.04287 6.05443 6.19937 6.29180 6.29803 6.48465 6.71904 6.92883 6.97422 7.26806 7.39513 7.60990 8.10429 8.13113 8.46394 8.79880 8.97008 9.52449 11.05319 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015664 B = 0.003383 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.144650 B = 8275.298736 C = 8808.220540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.131 3.869 3 C -0.157 4.157 4 N -0.582 5.582 5 C 0.217 3.783 6 C -0.523 4.523 7 H 0.078 0.922 8 C 0.073 3.927 9 N -0.896 5.896 10 Si 0.871 3.129 11 H -0.275 1.275 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.499 3.501 15 O -0.530 6.530 16 C 0.100 3.900 17 N -0.434 5.434 18 N 0.107 4.893 19 N -0.209 5.209 20 C 0.066 3.934 21 C -0.073 4.073 22 C -0.086 4.086 23 C -0.108 4.108 24 C -0.051 4.051 25 C -0.147 4.147 26 C 0.534 3.466 27 O -0.502 6.502 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.082 0.918 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.264 0.736 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.149 0.851 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.172 -16.951 -15.067 22.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.027 3.973 3 C -0.215 4.215 4 N -0.314 5.314 5 C 0.096 3.904 6 C -0.561 4.561 7 H 0.096 0.904 8 C -0.129 4.129 9 N -0.535 5.535 10 Si 0.698 3.302 11 H -0.201 1.201 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.283 3.717 15 O -0.406 6.406 16 C -0.025 4.025 17 N -0.258 5.258 18 N 0.121 4.879 19 N -0.100 5.100 20 C -0.043 4.043 21 C -0.096 4.096 22 C -0.105 4.105 23 C -0.128 4.128 24 C -0.070 4.070 25 C -0.158 4.158 26 C 0.324 3.676 27 O -0.374 6.374 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.167 0.833 41 H 0.159 0.841 42 H 0.157 0.843 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.456 -16.320 -14.426 21.831 hybrid contribution -1.505 -0.792 0.873 1.911 sum -0.049 -17.112 -13.554 21.830 Atomic orbital electron populations 1.22182 0.95303 1.02036 1.02683 1.21108 0.94377 0.94690 0.87166 1.22146 1.01914 0.94914 1.02555 1.47990 1.48980 1.26004 1.08423 1.19664 0.96506 0.95161 0.79034 1.21318 1.09244 1.22458 1.03090 0.90357 1.24833 0.96015 0.94773 0.97317 1.69891 1.34530 1.28284 1.20752 0.86927 0.83507 0.78242 0.81475 1.20057 1.21065 1.19105 1.20273 0.79773 0.81512 0.90171 1.90708 1.52876 1.58019 1.38992 1.21791 0.95827 0.86424 0.98483 1.50610 1.05001 1.07966 1.62214 1.80300 0.86288 1.19992 1.01366 1.73940 1.25385 0.97420 1.13225 1.19671 0.91568 0.92270 1.00785 1.21028 1.00263 0.90330 0.97940 1.21380 0.95713 0.96871 0.96576 1.21388 0.93161 0.99505 0.98786 1.21114 1.01343 0.89938 0.94619 1.20563 0.92756 0.95400 1.07042 1.18654 0.88650 0.83065 0.77238 1.90873 1.13220 1.84651 1.48635 0.91436 0.91753 0.92688 0.90689 0.92193 0.92976 0.89881 0.94818 0.94829 0.92610 0.85452 0.85648 0.83311 0.84119 0.84264 0.83705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.17 37.15 0.34 -1.88 16 2 C 0.13 2.00 3.17 -67.93 -0.22 1.78 16 3 C -0.16 -2.50 8.47 37.16 0.31 -2.18 16 4 N -0.58 -11.82 2.39 -167.47 -0.40 -12.22 16 5 C 0.22 5.26 3.66 -5.19 -0.02 5.24 16 6 C -0.52 -14.66 8.38 -34.44 -0.29 -14.95 16 7 H 0.08 2.39 7.87 -52.48 -0.41 1.98 16 8 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 9 N -0.90 -27.46 13.96 55.43 0.77 -26.68 16 10 Si 0.87 21.69 27.47 -169.99 -4.67 17.02 16 11 H -0.27 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 14 C 0.50 10.42 7.74 -10.98 -0.09 10.33 16 15 O -0.53 -13.64 16.01 5.56 0.09 -13.55 16 16 C 0.10 1.56 4.53 -5.20 -0.02 1.54 16 17 N -0.43 -7.30 3.01 -62.49 -0.19 -7.49 16 18 N 0.11 1.77 12.76 60.35 0.77 2.54 16 19 N -0.21 -3.14 11.61 32.27 0.37 -2.76 16 20 C 0.07 0.88 6.72 -84.51 -0.57 0.31 16 21 C -0.07 -0.67 10.02 -39.24 -0.39 -1.06 16 22 C -0.09 -0.59 10.00 -39.56 -0.40 -0.99 16 23 C -0.11 -0.81 10.02 -39.52 -0.40 -1.21 16 24 C -0.05 -0.55 9.67 -39.34 -0.38 -0.93 16 25 C -0.15 -2.08 5.90 -104.77 -0.62 -2.70 16 26 C 0.53 9.04 7.75 -12.39 -0.10 8.94 16 27 O -0.50 -9.27 16.33 5.16 0.08 -9.18 16 28 H 0.07 1.02 6.66 -51.93 -0.35 0.68 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.90 5.77 -51.92 -0.30 0.60 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 1.58 6.92 -51.93 -0.36 1.22 16 35 H 0.03 0.78 5.48 -51.93 -0.28 0.49 16 36 H 0.03 0.90 6.85 -51.93 -0.36 0.54 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.13 1.59 7.79 -51.93 -0.40 1.19 16 39 H 0.13 1.66 7.13 -51.93 -0.37 1.29 16 40 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16 41 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 42 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 43 H 0.15 1.47 7.81 -52.49 -0.41 1.06 16 LS Contribution 362.31 15.07 5.46 5.46 Total: -1.00 -37.05 362.31 -5.99 -43.05 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -5.37 Total: -0.44 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -2.92 Total: 4.27 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 1.33 Total: -46.62 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: 0.17 Total: -22.73 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.05 -5.99 -43.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053514261.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.691 kcal (2) G-P(sol) polarization free energy of solvation -37.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds