Wall clock time and date at job start Tue Mar 31 2020 05:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47013 * 2 1 4 4 N 1.46495 * 109.47115 * 179.97438 * 3 2 1 5 5 C 1.37097 * 120.00162 * 262.97798 * 4 3 2 6 6 H 1.08003 * 120.00032 * 142.20494 * 5 4 3 7 7 C 1.38943 * 119.99974 * 322.21049 * 5 4 3 8 8 N 1.31417 * 119.99981 * 157.13423 * 7 5 4 9 9 Si 1.86801 * 120.00139 * 337.13270 * 7 5 4 10 10 H 1.48504 * 109.47318 * 95.20337 * 9 7 5 11 11 H 1.48501 * 109.47295 * 215.20650 * 9 7 5 12 12 H 1.48499 * 109.47081 * 335.20723 * 9 7 5 13 13 C 1.34777 * 119.99932 * 82.97849 * 4 3 2 14 14 O 1.21296 * 120.00038 * 179.97438 * 13 4 3 15 15 C 1.50702 * 120.00267 * 0.02562 * 13 4 3 16 16 C 1.52998 * 109.47173 * 179.97438 * 15 13 4 17 17 N 1.46506 * 109.46933 * 179.97438 * 16 15 13 18 18 N 1.39733 * 119.95723 * 270.02306 * 17 16 15 19 19 N 1.28362 * 122.94740 * 179.97438 * 18 17 16 20 20 C 1.35625 * 121.96960 * 359.97438 * 19 18 17 21 21 C 1.39738 * 121.32993 * 179.97438 * 20 19 18 22 22 C 1.37640 * 119.73736 * 180.02562 * 21 20 19 23 23 C 1.38883 * 120.81010 * 0.02562 * 22 21 20 24 24 C 1.37764 * 120.53354 * 359.97438 * 23 22 21 25 25 C 1.39374 * 119.56603 * 359.97438 * 24 23 22 26 26 C 1.35406 * 119.95694 * 90.00106 * 17 16 15 27 27 O 1.21740 * 121.31667 * 359.75165 * 26 17 16 28 28 H 1.08999 * 109.47458 * 299.99958 * 1 2 3 29 29 H 1.08992 * 109.47533 * 60.00503 * 1 2 3 30 30 H 1.08997 * 109.46871 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47480 * 239.99489 * 2 1 3 32 32 H 1.09005 * 109.46978 * 119.99263 * 2 1 3 33 33 H 1.09000 * 109.47415 * 59.99449 * 3 2 1 34 34 H 1.09005 * 109.46647 * 299.99466 * 3 2 1 35 35 H 0.97000 * 119.99514 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.47091 * 59.99665 * 15 13 4 37 37 H 1.08997 * 109.47248 * 300.00253 * 15 13 4 38 38 H 1.08995 * 109.47427 * 59.99832 * 16 15 13 39 39 H 1.08999 * 109.47034 * 299.99747 * 16 15 13 40 40 H 1.07988 * 120.13328 * 0.05061 * 21 20 19 41 41 H 1.07995 * 119.59524 * 180.02562 * 22 21 20 42 42 H 1.07992 * 119.73499 * 179.97438 * 23 22 21 43 43 H 1.07999 * 120.21000 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1899 1.5879 1.1793 6 1 5.1000 1.0310 1.3472 7 6 3.7134 2.4515 2.1578 8 7 4.0659 2.2817 3.4124 9 14 2.5715 3.8540 1.6902 10 1 1.1616 3.4304 1.8850 11 1 2.8575 5.0321 2.5479 12 1 2.7877 4.2145 0.2659 13 6 4.1793 1.2997 -1.1575 14 8 5.3922 1.3002 -1.1571 15 6 3.4264 1.1406 -2.4533 16 6 4.4211 0.9988 -3.6070 17 7 3.6891 0.8434 -4.8666 18 7 3.3404 -0.4321 -5.3182 19 7 2.6995 -0.6345 -6.4118 20 6 2.3104 0.3864 -7.2155 21 6 1.6136 0.1507 -8.4036 22 6 1.2349 1.2113 -9.1949 23 6 1.5372 2.5162 -8.8279 24 6 2.2231 2.7741 -7.6613 25 6 2.6149 1.7143 -6.8452 26 6 3.3509 1.9361 -5.5913 27 8 3.6391 3.0580 -5.2165 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9563 -0.8901 35 1 3.7329 2.8844 4.0955 36 1 2.8000 2.0170 -2.6196 37 1 2.7993 0.2505 -2.4022 38 1 5.0477 0.1226 -3.4410 39 1 5.0477 1.8892 -3.6580 40 1 1.3728 -0.8595 -8.6996 41 1 0.6961 1.0266 -10.1125 42 1 1.2320 3.3354 -9.4620 43 1 2.4551 3.7909 -7.3807 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059934268.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:22 Heat of formation + Delta-G solvation = 33.133691 kcal Electronic energy + Delta-G solvation = -27980.125055 eV Core-core repulsion = 24027.449724 eV Total energy + Delta-G solvation = -3952.675330 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.56249 -39.22641 -38.69343 -37.97168 -35.70452 -34.87360 -32.95509 -32.08782 -31.58763 -31.39595 -30.60914 -26.51889 -25.90072 -25.58227 -24.59694 -22.93643 -22.53489 -21.43049 -19.89296 -19.16735 -18.83998 -17.35036 -16.99767 -16.47362 -16.25306 -15.73335 -15.58315 -15.42009 -15.17551 -14.72913 -14.43366 -14.36804 -14.02228 -13.70973 -13.35267 -13.15583 -13.08789 -13.02167 -12.62264 -12.44895 -12.37138 -12.18692 -12.06558 -11.84762 -11.52186 -11.21102 -11.01352 -10.85689 -10.75910 -10.52297 -10.35350 -10.25758 -10.03431 -9.85355 -9.70949 -9.09833 -8.82279 -8.54671 -7.77857 -6.41806 -3.98001 -0.36803 0.28825 1.52100 1.73154 2.26053 3.01859 3.21034 3.27604 3.34664 3.35441 3.63419 3.66531 4.12825 4.14114 4.29812 4.35715 4.62033 4.68832 4.88370 4.97015 5.04869 5.11464 5.26528 5.31231 5.35642 5.42930 5.49258 5.53227 5.62362 5.67474 5.74529 5.78374 5.84619 5.91669 6.04615 6.09823 6.13419 6.18235 6.25401 6.28498 6.53598 6.74391 7.32703 7.52124 7.99255 8.26325 8.46811 8.93188 9.29729 9.72408 10.70053 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.017726 B = 0.003085 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.246243 B = 9074.891221 C = 9203.228882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.090 3.910 4 N -0.462 5.462 5 C -0.315 4.315 6 H 0.107 0.893 7 C 0.063 3.937 8 N -0.861 5.861 9 Si 0.869 3.131 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.263 1.263 13 C 0.472 3.528 14 O -0.565 6.565 15 C -0.154 4.154 16 C 0.139 3.861 17 N -0.449 5.449 18 N 0.095 4.905 19 N -0.213 5.213 20 C 0.064 3.936 21 C -0.073 4.073 22 C -0.086 4.086 23 C -0.107 4.107 24 C -0.051 4.051 25 C -0.151 4.151 26 C 0.522 3.478 27 O -0.495 6.495 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.274 0.726 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.149 0.851 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.661 -3.129 -23.909 26.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C -0.034 4.034 4 N -0.182 5.182 5 C -0.442 4.442 6 H 0.124 0.876 7 C -0.143 4.143 8 N -0.497 5.497 9 Si 0.696 3.304 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.188 1.188 13 C 0.260 3.740 14 O -0.447 6.447 15 C -0.196 4.196 16 C 0.018 3.982 17 N -0.274 5.274 18 N 0.109 4.891 19 N -0.104 5.104 20 C -0.046 4.046 21 C -0.096 4.096 22 C -0.105 4.105 23 C -0.127 4.127 24 C -0.070 4.070 25 C -0.162 4.162 26 C 0.312 3.688 27 O -0.366 6.366 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.166 0.834 41 H 0.159 0.841 42 H 0.158 0.842 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.712 -3.470 -23.066 25.266 hybrid contribution -0.947 1.990 -0.330 2.228 sum -10.659 -1.480 -23.395 25.752 Atomic orbital electron populations 1.21724 0.96095 1.01366 1.01507 1.21919 0.95054 0.97700 1.02940 1.21904 0.83086 0.96766 1.01603 1.43720 1.03740 1.64502 1.06280 1.19028 1.10584 1.25165 0.89467 0.87593 1.25334 0.97160 0.97076 0.94727 1.69768 1.43896 1.36281 0.99707 0.87072 0.80244 0.83181 0.79872 1.20146 1.21186 1.18766 1.19831 0.87924 0.82325 0.83944 1.90574 1.13627 1.54137 1.86366 1.22031 0.99469 1.03849 0.94243 1.21685 0.93191 1.06181 0.77157 1.51382 1.49527 1.03700 1.22817 1.80276 1.01799 1.01349 1.05646 1.73971 1.09589 1.26965 0.99909 1.19675 0.99705 0.88623 0.96571 1.21024 0.96134 1.00855 0.91612 1.21393 0.97570 0.92110 0.99462 1.21417 0.97523 0.97524 0.96282 1.21153 0.94243 0.99019 0.92628 1.20645 1.03695 0.94814 0.97021 1.18770 0.80387 0.85123 0.84508 1.90931 1.53324 1.21667 1.70646 0.92673 0.93221 0.92737 0.92204 0.90534 0.90492 0.92466 0.91574 0.89734 0.89134 0.87146 0.87042 0.83368 0.84122 0.84236 0.83639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 37.16 0.37 -1.68 16 2 C -0.14 -2.34 6.13 -26.73 -0.16 -2.50 16 3 C 0.09 1.82 3.74 -4.04 -0.02 1.80 16 4 N -0.46 -11.15 2.18 -114.81 -0.25 -11.40 16 5 C -0.32 -8.90 9.35 -14.94 -0.14 -9.04 16 6 H 0.11 3.35 7.92 -52.48 -0.42 2.93 16 7 C 0.06 1.75 5.24 -17.47 -0.09 1.66 16 8 N -0.86 -24.85 13.96 55.50 0.77 -24.08 16 9 Si 0.87 20.79 25.12 -169.99 -4.27 16.52 16 10 H -0.27 -6.08 6.67 56.52 0.38 -5.70 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.26 -6.36 7.11 56.52 0.40 -5.96 16 13 C 0.47 10.86 7.57 -10.98 -0.08 10.78 16 14 O -0.56 -14.87 15.85 5.54 0.09 -14.78 16 15 C -0.15 -2.72 4.63 -27.88 -0.13 -2.85 16 16 C 0.14 2.26 5.03 -4.04 -0.02 2.24 16 17 N -0.45 -6.69 3.52 -61.31 -0.22 -6.91 16 18 N 0.10 1.31 12.77 60.35 0.77 2.08 16 19 N -0.21 -2.64 11.61 32.27 0.37 -2.26 16 20 C 0.06 0.70 6.72 -84.51 -0.57 0.13 16 21 C -0.07 -0.54 10.02 -39.24 -0.39 -0.93 16 22 C -0.09 -0.46 10.00 -39.56 -0.40 -0.86 16 23 C -0.11 -0.66 10.02 -39.52 -0.40 -1.05 16 24 C -0.05 -0.48 9.67 -39.33 -0.38 -0.86 16 25 C -0.15 -1.84 5.90 -104.77 -0.62 -2.46 16 26 C 0.52 7.95 7.75 -12.39 -0.10 7.85 16 27 O -0.49 -8.79 16.33 5.15 0.08 -8.70 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.95 6.39 -51.93 -0.33 0.61 16 32 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 33 H 0.08 1.66 3.72 -51.93 -0.19 1.47 16 34 H 0.06 1.03 6.74 -51.93 -0.35 0.68 16 35 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.08 1.48 7.42 -51.93 -0.39 1.09 16 37 H 0.09 1.42 6.35 -51.93 -0.33 1.09 16 38 H 0.11 1.71 8.10 -51.93 -0.42 1.29 16 39 H 0.11 1.96 7.44 -51.93 -0.39 1.58 16 40 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.14 0.30 8.06 -52.49 -0.42 -0.13 16 42 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 43 H 0.15 1.31 7.81 -52.49 -0.41 0.90 16 LS Contribution 360.85 15.07 5.44 5.44 Total: -1.00 -33.65 360.85 -5.67 -39.31 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.34 Total: 2.54 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -3.12 Total: 2.24 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 1.45 Total: -42.56 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: 0.17 Total: -23.48 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.27 Total: 16.52 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.65 -5.67 -39.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059934268.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.449 kcal (2) G-P(sol) polarization free energy of solvation -33.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds