Wall clock time and date at job start Tue Mar 31 2020 06:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 110.99979 * 2 1 4 4 C 1.50697 * 109.47105 * 66.04207 * 3 2 1 5 5 H 1.08004 * 120.00187 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99899 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99993 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 120.00180 * 0.02562 * 6 4 3 9 9 H 1.48496 * 109.47336 * 89.99827 * 8 6 4 10 10 H 1.48503 * 109.46850 * 209.99682 * 8 6 4 11 11 H 1.48497 * 109.46895 * 329.99682 * 8 6 4 12 12 C 1.41426 * 111.00424 * 236.04610 * 2 1 3 13 13 C 1.36838 * 120.49570 * 243.95717 * 12 2 1 14 14 N 1.37620 * 120.32200 * 359.96767 * 13 12 2 15 15 N 1.37648 * 119.35788 * 179.97438 * 13 12 2 16 16 C 1.46499 * 119.80928 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.47080 * 269.97438 * 16 15 13 18 18 C 1.38235 * 120.00319 * 269.72707 * 17 16 15 19 19 C 1.38229 * 120.00068 * 179.76492 * 18 17 16 20 20 C 1.38238 * 120.00083 * 0.51493 * 19 18 17 21 21 C 1.38235 * 119.99985 * 359.74056 * 20 19 18 22 22 C 1.38237 * 119.99911 * 0.02562 * 21 20 19 23 23 C 1.34559 * 120.37832 * 359.97438 * 15 13 12 24 24 O 1.21615 * 119.47903 * 180.02562 * 23 15 13 25 25 N 1.34532 * 121.04239 * 359.97129 * 23 15 13 26 26 H 0.97001 * 119.68794 * 180.02562 * 25 23 15 27 27 C 1.34750 * 120.61629 * 0.30938 * 25 23 15 28 28 O 1.21975 * 120.20161 * 179.71956 * 27 25 23 29 29 H 1.09004 * 109.47032 * 183.95479 * 1 2 3 30 30 H 1.08995 * 109.47572 * 303.95430 * 1 2 3 31 31 H 1.09004 * 109.47240 * 63.95967 * 1 2 3 32 32 H 1.08995 * 109.47144 * 186.04711 * 3 2 1 33 33 H 1.09004 * 109.46988 * 306.04616 * 3 2 1 34 34 H 0.97001 * 120.00322 * 180.02562 * 7 6 4 35 35 H 0.96998 * 119.99891 * 180.02562 * 14 13 12 36 36 H 0.97000 * 119.99998 * 0.02562 * 14 13 12 37 37 H 1.08999 * 109.47260 * 29.97861 * 16 15 13 38 38 H 1.08996 * 109.47131 * 149.97876 * 16 15 13 39 39 H 1.08005 * 119.99611 * 359.97438 * 18 17 16 40 40 H 1.08002 * 119.99950 * 180.23056 * 19 18 17 41 41 H 1.08001 * 120.00097 * 179.72730 * 20 19 18 42 42 H 1.07998 * 120.00299 * 179.97438 * 21 20 19 43 43 H 1.07997 * 120.00356 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0744 1.5113 2.0488 6 6 2.0275 3.3492 1.5288 7 7 1.7150 3.9387 2.6621 8 14 3.0008 4.2758 0.2313 9 1 2.0643 4.9804 -0.6807 10 1 3.8879 5.2668 0.8919 11 1 3.8239 3.3170 -0.5486 12 6 1.9759 -0.7374 -1.0952 13 6 2.7080 -1.8746 -0.8873 14 7 2.9606 -2.3142 0.3921 15 7 3.1897 -2.5745 -1.9703 16 6 3.9742 -3.7936 -1.7592 17 6 5.4354 -3.4391 -1.6565 18 6 6.2219 -3.4131 -2.7930 19 6 7.5609 -3.0833 -2.6995 20 6 8.1161 -2.7898 -1.4679 21 6 7.3309 -2.8209 -0.3307 22 6 5.9906 -3.1461 -0.4249 23 6 2.9432 -2.1459 -3.2218 24 8 3.3762 -2.7772 -4.1667 25 7 2.2243 -1.0307 -3.4442 26 1 2.0581 -0.7399 -4.3545 27 6 1.7379 -0.3110 -2.4141 28 8 1.0914 0.7018 -2.6244 29 1 -0.3633 -1.0253 0.0709 30 1 -0.3634 0.5739 0.8524 31 1 -0.3634 0.4512 -0.9234 32 1 3.0796 1.3444 -0.1083 33 1 1.5610 1.9274 -0.8309 34 1 1.9896 4.8548 2.8241 35 1 3.4804 -3.1207 0.5341 36 1 2.6187 -1.8175 1.1519 37 1 3.6521 -4.2778 -0.8373 38 1 3.8232 -4.4726 -2.5983 39 1 5.7892 -3.6473 -3.7545 40 1 8.1746 -3.0594 -3.5879 41 1 9.1634 -2.5364 -1.3943 42 1 7.7646 -2.5920 0.6315 43 1 5.3771 -3.1708 0.4636 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060991486.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:05 Heat of formation + Delta-G solvation = 13.975155 kcal Electronic energy + Delta-G solvation = -29035.124062 eV Core-core repulsion = 25081.617955 eV Total energy + Delta-G solvation = -3953.506107 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.24419 -39.68893 -38.85607 -37.91515 -35.91237 -34.71316 -33.81381 -32.34620 -31.95771 -31.14850 -29.26449 -27.62119 -26.67056 -24.66990 -23.59246 -23.06143 -22.82722 -21.65366 -20.67491 -19.48327 -18.29884 -17.53047 -17.33102 -16.78107 -16.70979 -16.19449 -15.85810 -15.52760 -15.36328 -15.18793 -14.65681 -14.39659 -14.08340 -13.93989 -13.63458 -13.42210 -13.30741 -12.84537 -12.68543 -12.57382 -12.50009 -12.15560 -11.55012 -11.29249 -11.28268 -11.11752 -11.01228 -10.64012 -10.29151 -10.10258 -10.03418 -9.78526 -9.75926 -9.22204 -9.18263 -9.13378 -8.49730 -7.48588 -7.42113 -5.98685 -3.94372 0.87958 1.15035 1.52989 1.97925 2.11622 3.24565 3.38195 3.44197 3.45748 3.50863 3.63020 3.77170 4.23868 4.33297 4.51678 4.64323 4.73723 4.77665 4.87309 5.03949 5.19083 5.22324 5.34723 5.36361 5.43492 5.66543 5.75805 5.86123 6.01035 6.16664 6.21164 6.23993 6.26237 6.40875 6.57795 6.70393 6.85798 6.96971 7.07348 7.18649 7.31660 7.61313 7.68635 7.73676 7.95427 8.08705 8.38607 8.74930 9.07952 9.64946 11.14161 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.012050 B = 0.004380 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.021876 B = 6391.703693 C = 7306.606758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.447 5.447 3 C 0.161 3.839 4 C -0.505 4.505 5 H 0.080 0.920 6 C 0.071 3.929 7 N -0.903 5.903 8 Si 0.873 3.127 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.269 1.269 12 C -0.187 4.187 13 C 0.481 3.519 14 N -0.826 5.826 15 N -0.539 5.539 16 C 0.152 3.848 17 C -0.123 4.123 18 C -0.089 4.089 19 C -0.124 4.124 20 C -0.109 4.109 21 C -0.120 4.120 22 C -0.099 4.099 23 C 0.714 3.286 24 O -0.553 6.553 25 N -0.664 5.664 26 H 0.423 0.577 27 C 0.537 3.463 28 O -0.518 6.518 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.032 0.968 32 H 0.020 0.980 33 H 0.010 0.990 34 H 0.262 0.738 35 H 0.393 0.607 36 H 0.438 0.562 37 H 0.098 0.902 38 H 0.115 0.885 39 H 0.131 0.869 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.126 0.874 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.521 -20.623 -7.690 23.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.168 5.168 3 C 0.035 3.965 4 C -0.544 4.544 5 H 0.098 0.902 6 C -0.131 4.131 7 N -0.543 5.543 8 Si 0.700 3.300 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.193 1.193 12 C -0.297 4.297 13 C 0.267 3.733 14 N -0.372 5.372 15 N -0.267 5.267 16 C 0.031 3.969 17 C -0.124 4.124 18 C -0.107 4.107 19 C -0.142 4.142 20 C -0.127 4.127 21 C -0.138 4.138 22 C -0.117 4.117 23 C 0.416 3.584 24 O -0.428 6.428 25 N -0.333 5.333 26 H 0.264 0.736 27 C 0.334 3.666 28 O -0.395 6.395 29 H 0.060 0.940 30 H 0.099 0.901 31 H 0.051 0.949 32 H 0.038 0.962 33 H 0.028 0.972 34 H 0.072 0.928 35 H 0.224 0.776 36 H 0.275 0.725 37 H 0.116 0.884 38 H 0.133 0.867 39 H 0.149 0.851 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.144 0.856 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.592 -20.543 -7.662 23.932 hybrid contribution 0.420 1.135 -1.354 1.816 sum 10.012 -19.408 -9.016 23.627 Atomic orbital electron populations 1.22293 0.87464 0.99528 1.02050 1.59931 1.07647 1.16523 1.32699 1.20281 0.94744 0.83756 0.97711 1.21029 1.35289 0.97267 1.00795 0.90158 1.24815 0.95788 0.97302 0.95156 1.69890 1.47234 1.13207 1.23937 0.86893 0.80734 0.80066 0.82275 1.20208 1.21413 1.19339 1.18249 1.19452 1.01823 0.90160 1.17320 0.87633 0.87889 0.80456 1.42329 1.59506 1.30911 1.04413 1.44699 1.51263 1.26682 1.04033 1.20639 0.86720 0.84643 1.04945 1.19985 0.94859 1.03394 0.94177 1.21218 0.93687 0.97495 0.98335 1.21203 0.95310 0.99909 0.97813 1.21261 1.00040 0.98682 0.92757 1.21161 0.93926 0.99843 0.98917 1.21065 0.95553 0.98480 0.96651 1.15544 0.79183 0.81332 0.82353 1.91000 1.55363 1.56925 1.39506 1.44800 1.50758 1.24459 1.13294 0.73615 1.17927 0.79453 0.83760 0.85454 1.90949 1.39568 1.23992 1.84949 0.94010 0.90123 0.94910 0.96169 0.97197 0.92802 0.77578 0.72531 0.88352 0.86656 0.85082 0.85861 0.85923 0.85627 0.86089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 9.15 60.06 0.55 1.24 16 2 N -0.45 -9.20 3.87 -179.83 -0.70 -9.90 16 3 C 0.16 4.07 3.32 -4.98 -0.02 4.05 16 4 C -0.51 -14.36 9.01 -34.44 -0.31 -14.67 16 5 H 0.08 2.40 7.37 -52.48 -0.39 2.02 16 6 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 7 N -0.90 -27.80 13.96 55.43 0.77 -27.02 16 8 Si 0.87 22.73 27.47 -169.99 -4.67 18.06 16 9 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 10 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 11 H -0.27 -6.91 6.54 56.52 0.37 -6.54 16 12 C -0.19 -3.36 4.72 -83.02 -0.39 -3.75 16 13 C 0.48 6.51 7.50 -152.49 -1.14 5.37 16 14 N -0.83 -8.46 8.76 31.37 0.27 -8.19 16 15 N -0.54 -6.42 2.62 -121.89 -0.32 -6.74 16 16 C 0.15 1.28 5.09 -5.19 -0.03 1.26 16 17 C -0.12 -1.16 5.46 -104.62 -0.57 -1.73 16 18 C -0.09 -0.89 9.70 -39.59 -0.38 -1.28 16 19 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 20 C -0.11 -0.97 10.05 -39.58 -0.40 -1.36 16 21 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 22 C -0.10 -0.88 9.59 -39.58 -0.38 -1.26 16 23 C 0.71 9.97 8.38 -87.33 -0.73 9.24 16 24 O -0.55 -8.05 16.15 5.26 0.09 -7.96 16 25 N -0.66 -10.03 5.21 -18.74 -0.10 -10.12 16 26 H 0.42 5.63 8.87 -40.82 -0.36 5.27 16 27 C 0.54 10.08 7.31 -15.36 -0.11 9.97 16 28 O -0.52 -11.64 14.13 4.94 0.07 -11.57 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 1.74 6.76 -51.93 -0.35 1.39 16 31 H 0.03 0.71 6.45 -51.93 -0.34 0.37 16 32 H 0.02 0.53 7.12 -51.93 -0.37 0.16 16 33 H 0.01 0.28 5.89 -51.93 -0.31 -0.02 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.39 2.63 4.86 -40.82 -0.20 2.43 16 36 H 0.44 5.10 8.04 -40.82 -0.33 4.77 16 37 H 0.10 0.53 6.37 -51.93 -0.33 0.20 16 38 H 0.12 0.92 7.32 -51.93 -0.38 0.54 16 39 H 0.13 1.33 7.54 -52.48 -0.40 0.94 16 40 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 41 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.12 0.85 6.21 -52.49 -0.33 0.52 16 LS Contribution 351.20 15.07 5.29 5.29 Total: -1.00 -35.87 351.20 -9.02 -44.89 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -4.93 Total: 7.23 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: -4.81 Total: 6.02 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: -0.06 Total: -61.96 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: 0.15 Total: -19.53 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.67 Total: 18.06 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.87 -9.02 -44.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060991486.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.868 kcal (2) G-P(sol) polarization free energy of solvation -35.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds