Wall clock time and date at job start Tue Mar 31 2020 06:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00253 * 2 1 4 4 H 1.48493 * 109.47202 * 270.00070 * 3 2 1 5 5 H 1.48495 * 109.47261 * 149.99600 * 3 2 1 6 6 H 1.48502 * 109.46938 * 30.00000 * 3 2 1 7 7 C 1.37881 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00086 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99939 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47278 * 179.97438 * 9 7 2 11 11 N 1.40068 * 125.86834 * 90.01824 * 10 9 7 12 12 C 1.30251 * 109.69113 * 179.97438 * 11 10 9 13 13 C 1.41170 * 108.47065 * 0.02562 * 12 11 10 14 14 C 1.36311 * 125.87701 * 269.71739 * 10 9 7 15 15 N 1.33201 * 134.61046 * 0.69865 * 14 10 9 16 16 C 1.31506 * 120.67901 * 179.66790 * 15 14 10 17 17 N 1.32121 * 122.64876 * 359.69689 * 16 15 14 18 18 C 1.32861 * 121.19392 * 0.02702 * 17 16 15 19 19 N 1.38104 * 120.81138 * 180.02562 * 18 17 16 20 20 C 1.46497 * 120.00317 * 359.97438 * 19 18 17 21 21 H 1.08997 * 109.63049 * 316.56083 * 20 19 18 22 22 C 1.53066 * 109.63070 * 195.96513 * 20 19 18 23 23 C 1.51816 * 110.73007 * 325.23878 * 22 20 19 24 24 C 1.51776 * 113.79618 * 293.15438 * 23 22 20 25 25 C 1.52990 * 110.87708 * 67.01607 * 24 23 22 26 26 N 1.47198 * 108.66272 * 273.53442 * 25 24 23 27 27 C 1.33371 * 120.42813 * 71.99443 * 26 25 24 28 28 O 1.21285 * 119.88516 * 179.67727 * 27 26 25 29 29 H 0.97009 * 120.00207 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46660 * 300.00208 * 9 7 2 31 31 H 1.09001 * 109.47242 * 59.99607 * 9 7 2 32 32 H 1.08004 * 125.76696 * 180.02562 * 12 11 10 33 33 H 1.08004 * 118.67376 * 179.71875 * 16 15 14 34 34 H 0.97003 * 119.99328 * 179.97438 * 19 18 17 35 35 H 1.08998 * 109.22247 * 85.54236 * 22 20 19 36 36 H 1.09004 * 109.21663 * 204.88740 * 22 20 19 37 37 H 1.09004 * 108.60802 * 172.04699 * 23 22 20 38 38 H 1.09000 * 108.63465 * 54.28007 * 23 22 20 39 39 H 1.08993 * 109.19937 * 306.65009 * 24 23 22 40 40 H 1.09003 * 109.15696 * 187.34603 * 24 23 22 41 41 H 1.09001 * 109.60423 * 153.78504 * 25 24 23 42 42 H 1.08994 * 109.73953 * 33.37110 * 25 24 23 43 43 H 0.97003 * 119.78269 * 251.96707 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 3.5467 1.4401 0.7001 6 1 1.4466 2.6526 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2029 -3.6127 -0.0027 11 7 2.7360 -4.2378 1.1318 12 6 3.5485 -5.1886 0.7681 13 6 3.5857 -5.2298 -0.6425 14 6 2.7179 -4.2225 -1.1077 15 7 2.5787 -4.0507 -2.4213 16 6 3.2304 -4.8145 -3.2706 17 7 4.0502 -5.7748 -2.8816 18 6 4.2598 -6.0206 -1.5929 19 7 5.1189 -7.0261 -1.1951 20 6 5.8119 -7.8374 -2.1990 21 1 5.1165 -8.1104 -2.9927 22 6 6.3707 -9.1018 -1.5418 23 6 6.8239 -8.8140 -0.1218 24 6 8.0213 -7.8851 -0.0375 25 6 7.6553 -6.4790 -0.5165 26 7 7.8237 -6.4204 -1.9776 27 6 6.9656 -7.0491 -2.7822 28 8 7.1103 -6.9894 -3.9849 29 1 -0.4851 -0.8401 -0.0004 30 1 0.6240 -2.5574 0.8880 31 1 0.6246 -2.5563 -0.8919 32 1 4.1005 -5.8361 1.4332 33 1 3.0900 -4.6500 -4.3287 34 1 5.2635 -7.1951 -0.2509 35 1 5.5963 -9.8686 -1.5227 36 1 7.2187 -9.4636 -2.1234 37 1 7.0811 -9.7577 0.3593 38 1 5.9949 -8.3634 0.4238 39 1 8.8245 -8.2783 -0.6606 40 1 8.3623 -7.8340 0.9966 41 1 8.3119 -5.7489 -0.0432 42 1 6.6191 -6.2603 -0.2586 43 1 8.5633 -5.9210 -2.3578 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065533102.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:53 Heat of formation + Delta-G solvation = 94.779195 kcal Electronic energy + Delta-G solvation = -28670.686777 eV Core-core repulsion = 24752.977348 eV Total energy + Delta-G solvation = -3917.709430 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.66773 -40.76412 -38.47444 -37.47437 -35.63236 -34.24064 -33.80740 -32.22908 -31.31485 -30.93469 -29.15090 -27.00529 -26.29653 -24.49032 -24.00216 -23.45561 -22.54273 -21.12262 -20.41984 -20.03405 -18.38661 -17.80154 -17.44678 -16.99176 -16.70290 -16.32082 -15.69984 -15.25648 -15.07618 -14.79295 -14.35443 -14.18117 -14.00045 -13.94406 -13.82357 -13.69588 -13.30338 -12.93647 -12.80020 -12.43886 -12.25312 -11.87587 -11.73983 -11.29134 -11.25738 -11.20648 -11.10135 -10.99625 -10.73245 -10.23726 -10.19349 -10.15172 -9.48256 -9.28783 -9.15704 -8.77837 -8.56229 -8.27730 -7.74572 -6.58242 -4.32802 1.15806 1.81240 2.33996 2.80887 2.91015 3.02059 3.13672 3.37333 3.40019 3.56400 4.08175 4.17356 4.26021 4.35748 4.38115 4.41072 4.48053 4.61953 4.66043 4.80771 4.89173 4.98303 5.05604 5.08822 5.17025 5.28098 5.37318 5.41242 5.44736 5.53511 5.58790 5.59524 5.76798 6.15257 6.44328 6.61756 6.64771 6.71140 6.85962 7.01614 7.10878 7.32433 7.66954 7.72112 8.05750 8.11563 8.24850 8.57574 8.70479 9.35086 10.79498 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.018023 B = 0.003209 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.156050 B = 8724.662687 C = 8801.450269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.027 3.973 3 Si 1.079 2.921 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.280 1.280 7 C -0.613 4.613 8 H 0.056 0.944 9 C 0.255 3.745 10 N -0.330 5.330 11 N -0.239 5.239 12 C 0.067 3.933 13 C -0.333 4.333 14 C 0.364 3.636 15 N -0.552 5.552 16 C 0.370 3.630 17 N -0.605 5.605 18 C 0.501 3.499 19 N -0.700 5.700 20 C 0.145 3.855 21 H 0.122 0.878 22 C -0.125 4.125 23 C -0.127 4.127 24 C -0.142 4.142 25 C 0.090 3.910 26 N -0.720 5.720 27 C 0.516 3.484 28 O -0.538 6.538 29 H 0.268 0.732 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.183 0.817 33 H 0.197 0.803 34 H 0.413 0.587 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.554 -20.045 1.044 25.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.178 4.178 3 Si 0.906 3.094 4 H -0.211 1.211 5 H -0.214 1.214 6 H -0.206 1.206 7 C -0.651 4.651 8 H 0.074 0.926 9 C 0.137 3.863 10 N -0.116 5.116 11 N -0.054 5.054 12 C -0.129 4.129 13 C -0.351 4.351 14 C 0.116 3.884 15 N -0.276 5.276 16 C 0.076 3.924 17 N -0.334 5.334 18 C 0.249 3.751 19 N -0.343 5.343 20 C 0.037 3.963 21 H 0.140 0.860 22 C -0.163 4.163 23 C -0.165 4.165 24 C -0.181 4.181 25 C -0.035 4.035 26 N -0.373 5.373 27 C 0.300 3.700 28 O -0.413 6.413 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.200 0.800 33 H 0.213 0.787 34 H 0.257 0.743 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 14.425 -17.541 0.516 22.717 hybrid contribution 1.040 -1.955 0.486 2.267 sum 15.465 -19.496 1.002 24.905 Atomic orbital electron populations 1.70800 1.06733 1.30566 1.45544 1.25885 0.96311 1.02607 0.92994 0.83397 0.74557 0.74392 0.77081 1.21051 1.21413 1.20590 1.22119 0.94909 0.90707 1.57370 0.92572 1.19818 0.86384 0.81363 0.98729 1.49150 1.36060 1.27463 0.98911 1.76940 1.11384 1.07901 1.09219 1.23359 0.99295 0.97994 0.92216 1.19570 1.12352 1.07927 0.95255 1.18926 0.91113 0.89808 0.88523 1.67545 1.29491 1.30629 0.99926 1.24481 0.84876 0.83757 0.99269 1.68022 1.25833 1.25233 1.14318 1.17949 0.84285 0.84455 0.88392 1.44943 1.45831 1.34629 1.08861 1.21360 0.92385 0.90106 0.92475 0.86042 1.21612 1.02160 0.96027 0.96506 1.21161 0.97952 1.00784 0.96588 1.21862 0.98560 0.95158 1.02514 1.22161 1.04036 0.97204 0.80103 1.45842 1.30651 1.53486 1.07273 1.20836 0.83249 0.79305 0.86598 1.90755 1.74325 1.61468 1.14734 0.92127 0.93813 0.93315 0.80030 0.78659 0.74257 0.89623 0.89939 0.90580 0.91783 0.90879 0.90157 0.89641 0.89306 0.76630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.75 13.65 55.43 0.76 -25.99 16 2 C 0.03 0.78 5.46 -17.82 -0.10 0.68 16 3 Si 1.08 25.36 29.90 -169.99 -5.08 20.28 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.61 -17.59 9.39 -34.44 -0.32 -17.91 16 8 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.25 6.70 5.51 -5.19 -0.03 6.68 16 10 N -0.33 -7.77 3.63 -61.64 -0.22 -8.00 16 11 N -0.24 -4.93 12.45 30.80 0.38 -4.55 16 12 C 0.07 1.05 11.87 -17.11 -0.20 0.85 16 13 C -0.33 -5.79 6.14 -106.82 -0.66 -6.45 16 14 C 0.36 7.94 8.04 -156.23 -1.26 6.68 16 15 N -0.55 -11.69 10.47 -13.97 -0.15 -11.83 16 16 C 0.37 6.42 12.24 -92.12 -1.13 5.30 16 17 N -0.60 -9.92 9.41 -13.62 -0.13 -10.05 16 18 C 0.50 7.46 7.41 -154.85 -1.15 6.31 16 19 N -0.70 -7.04 3.19 -54.35 -0.17 -7.22 16 20 C 0.15 1.41 2.70 -68.70 -0.19 1.23 16 21 H 0.12 1.38 7.86 -51.93 -0.41 0.98 16 22 C -0.13 -0.74 5.57 -27.30 -0.15 -0.89 16 23 C -0.13 -0.53 5.19 -27.95 -0.15 -0.68 16 24 C -0.14 -0.63 5.73 -27.36 -0.16 -0.79 16 25 C 0.09 0.59 6.42 -3.67 -0.02 0.57 16 26 N -0.72 -6.74 5.27 -59.90 -0.32 -7.06 16 27 C 0.52 6.25 6.53 -11.26 -0.07 6.18 16 28 O -0.54 -8.82 17.92 5.55 0.10 -8.72 16 29 H 0.27 7.85 7.22 -40.82 -0.29 7.56 16 30 H 0.04 1.17 8.01 -51.93 -0.42 0.75 16 31 H 0.05 1.33 8.01 -51.93 -0.42 0.92 16 32 H 0.18 1.80 8.06 -52.48 -0.42 1.38 16 33 H 0.20 2.69 8.06 -52.48 -0.42 2.27 16 34 H 0.41 3.07 4.25 -40.82 -0.17 2.90 16 35 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.50 7.86 -51.93 -0.41 0.09 16 37 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.06 0.24 5.71 -51.93 -0.30 -0.06 16 39 H 0.07 0.36 8.05 -51.93 -0.42 -0.06 16 40 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.09 0.68 4.53 -51.93 -0.24 0.45 16 43 H 0.40 3.53 8.91 -40.82 -0.36 3.17 16 LS Contribution 352.33 15.07 5.31 5.31 Total: -1.00 -36.78 352.33 -10.27 -47.06 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -5.17 Total: 3.01 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: -5.58 Total: 7.76 kcal Atomic # 7 Polarization: -74.85 SS G_CDS: 0.15 Total: -74.69 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.10 Total: -8.72 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.08 Total: 20.28 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.78 -10.27 -47.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065533102.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.834 kcal (2) G-P(sol) polarization free energy of solvation -36.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds