Wall clock time and date at job start Tue Mar 31 2020 06:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.47364 * 179.72223 * 3 2 1 5 5 H 1.48508 * 109.46883 * 299.72346 * 3 2 1 6 6 H 1.48497 * 109.46870 * 59.72156 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 N 1.46500 * 109.46944 * 180.02562 * 9 7 2 11 11 N 1.40064 * 125.87406 * 90.02630 * 10 9 7 12 12 C 1.30249 * 109.69595 * 180.02562 * 11 10 9 13 13 C 1.41162 * 108.47245 * 359.97438 * 12 11 10 14 14 C 1.36312 * 125.87678 * 269.71661 * 10 9 7 15 15 N 1.33200 * 134.60927 * 0.78240 * 14 10 9 16 16 C 1.31513 * 120.68458 * 179.54387 * 15 14 10 17 17 N 1.32127 * 122.64268 * 359.70980 * 16 15 14 18 18 C 1.32853 * 121.19281 * 359.97438 * 17 16 15 19 19 N 1.38110 * 120.81220 * 179.97438 * 18 17 16 20 20 C 1.46497 * 119.99767 * 0.02882 * 19 18 17 21 21 H 1.08994 * 109.63396 * 35.39490 * 20 19 18 22 22 C 1.53063 * 109.63197 * 155.99567 * 20 19 18 23 23 C 1.51826 * 110.72975 * 204.64181 * 22 20 19 24 24 C 1.51778 * 113.79743 * 293.15628 * 23 22 20 25 25 C 1.52987 * 110.87746 * 67.01104 * 24 23 22 26 26 N 1.47194 * 108.66485 * 273.53766 * 25 24 23 27 27 C 1.33368 * 120.43146 * 71.99234 * 26 25 24 28 28 O 1.21286 * 119.89272 * 179.67776 * 27 26 25 29 29 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 31 31 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 32 32 H 1.08008 * 125.76505 * 180.02562 * 12 11 10 33 33 H 1.07999 * 118.67676 * 179.68201 * 16 15 14 34 34 H 0.97000 * 120.00331 * 180.02562 * 19 18 17 35 35 H 1.08998 * 109.22489 * 324.94723 * 22 20 19 36 36 H 1.08999 * 109.22380 * 84.29619 * 22 20 19 37 37 H 1.08997 * 108.60815 * 172.04719 * 23 22 20 38 38 H 1.09001 * 108.52128 * 54.20233 * 23 22 20 39 39 H 1.09003 * 109.19358 * 306.65263 * 24 23 22 40 40 H 1.08997 * 109.15306 * 187.34676 * 24 23 22 41 41 H 1.09002 * 109.60505 * 153.78520 * 25 24 23 42 42 H 1.08998 * 109.60653 * 33.28838 * 25 24 23 43 43 H 0.96998 * 119.78355 * 251.97161 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0068 5 1 1.8957 2.3934 -1.2159 6 1 1.8855 2.3993 1.2091 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 7 2.2027 -3.6127 0.0131 11 7 2.7305 -4.2340 1.1521 12 6 3.5455 -5.1853 0.7954 13 6 3.5890 -5.2317 -0.6148 14 6 2.7227 -4.2264 -1.0874 15 7 2.5906 -4.0584 -2.4022 16 6 3.2476 -4.8239 -3.2459 17 7 4.0660 -5.7826 -2.8498 18 6 4.2693 -6.0241 -1.5593 19 7 5.1261 -7.0286 -1.1540 20 6 5.8244 -7.8426 -2.1519 21 1 6.0819 -7.2257 -3.0127 22 6 7.0965 -8.4310 -1.5368 23 6 8.1186 -8.7458 -2.6144 24 6 7.6985 -9.8659 -3.5485 25 6 6.4989 -9.4451 -4.3995 26 7 5.2655 -9.7280 -3.6477 27 6 4.9318 -8.9837 -2.5925 28 8 3.9103 -9.2219 -1.9836 29 1 -0.4851 -0.8400 -0.0004 30 1 0.6205 -2.5547 0.8933 31 1 0.6280 -2.5591 -0.8867 32 1 4.0946 -5.8303 1.4654 33 1 3.1123 -4.6627 -4.3052 34 1 5.2656 -7.1950 -0.2086 35 1 7.5227 -7.7119 -0.8373 36 1 6.8458 -9.3465 -1.0009 37 1 9.0557 -9.0266 -2.1336 38 1 8.2878 -7.8453 -3.2048 39 1 7.4298 -10.7424 -2.9588 40 1 8.5326 -10.1168 -4.2038 41 1 6.4963 -10.0092 -5.3322 42 1 6.5594 -8.3783 -4.6147 43 1 4.6915 -10.4603 -3.9217 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065533107.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:56 Heat of formation + Delta-G solvation = 76.091833 kcal Electronic energy + Delta-G solvation = -28014.427469 eV Core-core repulsion = 24095.907694 eV Total energy + Delta-G solvation = -3918.519774 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.46310 -40.56714 -38.40612 -37.02370 -36.29397 -34.16690 -33.68674 -32.25415 -31.23805 -30.75870 -29.04499 -26.95338 -26.13788 -24.50277 -23.89697 -23.32886 -22.38640 -21.30199 -20.26568 -19.89719 -18.11519 -17.69043 -17.42834 -17.15444 -16.82777 -16.38837 -15.59579 -15.23525 -14.89704 -14.55438 -14.53735 -14.16443 -14.00006 -13.88811 -13.79578 -13.71852 -13.30592 -13.08385 -12.63005 -12.22665 -12.08549 -11.81867 -11.58133 -11.51176 -11.30261 -11.18997 -11.13157 -10.94192 -10.69135 -10.18070 -10.13050 -10.10177 -9.44481 -9.36218 -9.12138 -8.72256 -8.51653 -8.17888 -7.65654 -6.53677 -4.27699 1.28126 1.90578 2.50626 2.73678 2.97092 3.02555 3.19053 3.39590 3.43408 3.58287 4.05970 4.18679 4.30105 4.37817 4.44040 4.46855 4.56400 4.65850 4.70980 4.87526 4.94373 4.97505 5.02798 5.13659 5.17895 5.22155 5.40525 5.46181 5.49867 5.52081 5.62223 5.69144 5.76719 6.23461 6.51474 6.59664 6.71462 6.83760 6.95644 7.00126 7.18122 7.44344 7.73185 7.82323 8.07342 8.16441 8.31143 8.62551 8.77746 9.40270 10.84069 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.023804 B = 0.002699 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.009924 B =10373.473429 C =10442.795361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.026 3.974 3 Si 1.083 2.917 4 H -0.289 1.289 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.611 4.611 8 H 0.057 0.943 9 C 0.254 3.746 10 N -0.331 5.331 11 N -0.243 5.243 12 C 0.073 3.927 13 C -0.332 4.332 14 C 0.365 3.635 15 N -0.555 5.555 16 C 0.368 3.632 17 N -0.620 5.620 18 C 0.518 3.482 19 N -0.685 5.685 20 C 0.142 3.858 21 H 0.118 0.882 22 C -0.124 4.124 23 C -0.119 4.119 24 C -0.143 4.143 25 C 0.104 3.896 26 N -0.725 5.725 27 C 0.508 3.492 28 O -0.536 6.536 29 H 0.269 0.731 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.184 0.816 33 H 0.195 0.805 34 H 0.413 0.587 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.794 -21.675 -8.510 29.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.179 4.179 3 Si 0.910 3.090 4 H -0.215 1.215 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.649 4.649 8 H 0.075 0.925 9 C 0.137 3.863 10 N -0.117 5.117 11 N -0.059 5.059 12 C -0.123 4.123 13 C -0.350 4.350 14 C 0.117 3.883 15 N -0.279 5.279 16 C 0.075 3.925 17 N -0.350 5.350 18 C 0.266 3.734 19 N -0.318 5.318 20 C 0.033 3.967 21 H 0.135 0.865 22 C -0.163 4.163 23 C -0.157 4.157 24 C -0.182 4.182 25 C -0.020 4.020 26 N -0.379 5.379 27 C 0.292 3.708 28 O -0.412 6.412 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.201 0.799 33 H 0.212 0.788 34 H 0.251 0.749 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 17.362 -19.023 -8.088 26.995 hybrid contribution 0.452 -2.626 0.330 2.685 sum 17.815 -21.649 -7.759 29.090 Atomic orbital electron populations 1.70759 1.06740 1.30611 1.45749 1.25895 0.96332 1.02619 0.93070 0.83349 0.74337 0.74134 0.77194 1.21505 1.20940 1.21001 1.22161 0.94956 0.90698 1.57108 0.92503 1.19804 0.86429 0.81404 0.98681 1.49130 1.36093 1.27484 0.98980 1.76937 1.11724 1.08284 1.08924 1.23390 0.98848 0.97606 0.92418 1.19550 1.12078 1.08014 0.95365 1.18903 0.91118 0.89800 0.88491 1.67501 1.29607 1.30740 1.00101 1.24374 0.85159 0.83840 0.99177 1.67866 1.27002 1.25803 1.14341 1.17810 0.83669 0.83693 0.88265 1.43911 1.46404 1.32956 1.08502 1.21009 0.90586 0.91144 0.94004 0.86466 1.21588 0.93576 1.01983 0.99122 1.21107 0.98406 0.99307 0.96898 1.21868 0.98343 0.99127 0.98852 1.21833 0.83249 1.02368 0.94580 1.45905 1.25888 1.35104 1.30981 1.21071 0.86409 0.83420 0.79899 1.90768 1.25793 1.69887 1.54732 0.92090 0.93857 0.93354 0.79889 0.78843 0.74943 0.89519 0.90968 0.90929 0.91148 0.91072 0.90274 0.89393 0.90113 0.76495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.30 13.65 55.43 0.76 -26.55 16 2 C 0.03 0.75 5.46 -17.82 -0.10 0.65 16 3 Si 1.08 25.79 29.90 -169.99 -5.08 20.70 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.61 -17.95 9.39 -34.44 -0.32 -18.27 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.25 6.96 5.51 -5.20 -0.03 6.93 16 10 N -0.33 -8.27 3.63 -61.64 -0.22 -8.49 16 11 N -0.24 -5.45 12.45 30.80 0.38 -5.07 16 12 C 0.07 1.31 11.87 -17.11 -0.20 1.10 16 13 C -0.33 -6.43 6.14 -106.82 -0.66 -7.09 16 14 C 0.36 8.44 8.04 -156.23 -1.26 7.19 16 15 N -0.55 -12.20 10.47 -13.97 -0.15 -12.34 16 16 C 0.37 6.46 12.24 -92.11 -1.13 5.34 16 17 N -0.62 -10.28 9.36 -13.62 -0.13 -10.41 16 18 C 0.52 8.56 7.53 -154.85 -1.17 7.40 16 19 N -0.69 -8.37 4.71 -54.35 -0.26 -8.62 16 20 C 0.14 1.37 2.17 -68.70 -0.15 1.23 16 21 H 0.12 1.14 6.24 -51.93 -0.32 0.82 16 22 C -0.12 -0.76 5.18 -27.29 -0.14 -0.90 16 23 C -0.12 -0.48 5.28 -27.95 -0.15 -0.63 16 24 C -0.14 -0.49 5.74 -27.36 -0.16 -0.65 16 25 C 0.10 0.45 6.47 -3.67 -0.02 0.43 16 26 N -0.73 -5.60 5.27 -59.90 -0.32 -5.91 16 27 C 0.51 5.85 6.98 -11.26 -0.08 5.77 16 28 O -0.54 -8.83 17.31 5.55 0.10 -8.73 16 29 H 0.27 8.04 7.22 -40.82 -0.29 7.75 16 30 H 0.04 1.20 8.00 -51.93 -0.42 0.79 16 31 H 0.05 1.37 8.01 -51.93 -0.42 0.95 16 32 H 0.18 2.29 8.06 -52.48 -0.42 1.86 16 33 H 0.20 2.56 8.06 -52.49 -0.42 2.14 16 34 H 0.41 4.20 8.47 -40.82 -0.35 3.85 16 35 H 0.09 0.47 8.08 -51.93 -0.42 0.05 16 36 H 0.07 0.46 7.86 -51.93 -0.41 0.05 16 37 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.07 0.27 7.88 -51.93 -0.41 -0.13 16 39 H 0.07 0.30 8.05 -51.93 -0.42 -0.12 16 40 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 41 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.08 0.37 6.71 -51.93 -0.35 0.03 16 43 H 0.40 2.81 8.91 -40.82 -0.36 2.45 16 LS Contribution 359.84 15.07 5.42 5.42 Total: -1.00 -38.42 359.84 -10.53 -48.95 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -5.48 Total: 2.56 kcal Atomic # 6 Polarization: 14.04 SS G_CDS: -5.56 Total: 8.49 kcal Atomic # 7 Polarization: -77.47 SS G_CDS: 0.07 Total: -77.40 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.10 Total: -8.73 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -5.08 Total: 20.70 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -38.42 -10.53 -48.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065533107.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.045 kcal (2) G-P(sol) polarization free energy of solvation -38.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds