Wall clock time and date at job start Tue Mar 31 2020 05:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46508 * 109.46975 * 2 1 4 4 N 1.40080 * 126.03855 * 270.15434 * 3 2 1 5 5 C 1.30836 * 108.20867 * 180.23079 * 4 3 2 6 6 C 1.50695 * 125.90309 * 179.81600 * 5 4 3 7 7 C 1.39880 * 108.19611 * 359.77857 * 5 4 3 8 8 C 1.50706 * 126.03564 * 179.97438 * 7 5 4 9 9 N 1.46492 * 109.47245 * 270.02725 * 8 7 5 10 10 S 1.65606 * 119.99735 * 165.00130 * 9 8 7 11 11 O 1.42102 * 106.40181 * 178.54264 * 10 9 8 12 12 O 1.42101 * 106.40126 * 311.46021 * 10 9 8 13 13 N 1.65597 * 107.21682 * 65.00291 * 10 9 8 14 14 C 1.46502 * 119.99657 * 269.99529 * 13 10 9 15 15 C 1.46496 * 120.00023 * 89.99984 * 13 10 9 16 16 C 1.50701 * 109.47301 * 94.99957 * 15 13 10 17 17 H 1.08009 * 119.99934 * 0.02562 * 16 15 13 18 18 C 1.37874 * 120.00367 * 179.97438 * 16 15 13 19 19 N 1.31513 * 120.00412 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99627 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47457 * 89.99937 * 20 18 16 22 22 H 1.48507 * 109.47120 * 209.99393 * 20 18 16 23 23 H 1.48494 * 109.47404 * 329.99495 * 20 18 16 24 24 C 1.34946 * 126.03491 * 89.99650 * 3 2 1 25 25 C 1.50703 * 126.12821 * 0.04077 * 24 3 2 26 26 H 1.09002 * 109.46784 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47583 * 299.99398 * 1 2 3 28 28 H 1.09002 * 109.47268 * 60.00269 * 1 2 3 29 29 H 1.08995 * 109.47583 * 240.00602 * 2 1 3 30 30 H 1.09002 * 109.47268 * 119.99731 * 2 1 3 31 31 H 1.09003 * 109.46956 * 269.95831 * 6 5 4 32 32 H 1.08999 * 109.47037 * 29.95728 * 6 5 4 33 33 H 1.09003 * 109.47071 * 149.95864 * 6 5 4 34 34 H 1.08997 * 109.46991 * 30.03182 * 8 7 5 35 35 H 1.08996 * 109.46546 * 150.02478 * 8 7 5 36 36 H 0.97001 * 120.00396 * 345.00368 * 9 8 7 37 37 H 1.09009 * 109.46759 * 90.00744 * 14 13 10 38 38 H 1.09000 * 109.47027 * 209.99965 * 14 13 10 39 39 H 1.08995 * 109.47828 * 330.00434 * 14 13 10 40 40 H 1.09001 * 109.47343 * 214.99547 * 15 13 10 41 41 H 1.08994 * 109.47067 * 334.99728 * 15 13 10 42 42 H 0.96994 * 120.00407 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.47152 * 269.68605 * 25 24 3 44 44 H 1.09001 * 109.46980 * 149.68706 * 25 24 3 45 45 H 1.09004 * 109.47113 * 29.68687 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2901 2.1593 -1.1327 5 6 2.7110 3.3316 -0.7321 6 6 3.1191 4.4760 -1.6236 7 6 2.7158 3.3394 0.6666 8 6 3.1307 4.4913 1.5454 9 7 4.5651 4.3982 1.8277 10 16 5.3733 5.7038 2.4481 11 8 6.7190 5.2890 2.6391 12 8 5.0102 6.8188 1.6456 13 7 4.7542 5.9918 3.9567 14 6 3.6130 6.8959 4.1197 15 6 5.3477 5.3427 5.1283 16 6 6.3559 6.2685 5.7587 17 1 6.5362 7.2433 5.3298 18 6 7.0474 5.8718 6.8836 19 7 7.9276 6.6795 7.4334 20 14 6.7350 4.1863 7.6258 21 1 7.6574 3.1968 7.0131 22 1 6.9689 4.2397 9.0913 23 1 5.3304 3.7823 7.3632 24 6 2.2828 2.1298 1.0913 25 6 2.1297 1.6943 2.5258 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 4.1851 4.4056 -1.8400 32 1 2.5554 4.4296 -2.5553 33 1 2.9120 5.4204 -1.1202 34 1 2.9210 5.4314 1.0352 35 1 2.5730 4.4535 2.4811 36 1 5.0416 3.5719 1.6512 37 1 2.6858 6.3273 4.0473 38 1 3.6680 7.3782 5.0957 39 1 3.6359 7.6548 3.3377 40 1 4.5651 5.1115 5.8510 41 1 5.8425 4.4213 4.8214 42 1 8.4143 6.4003 8.2246 43 1 1.1255 1.9363 2.8738 44 1 2.8630 2.2131 3.1433 45 1 2.2898 0.6185 2.5981 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066935710.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:33 Heat of formation + Delta-G solvation = -4.037351 kcal Electronic energy + Delta-G solvation = -27212.873363 eV Core-core repulsion = 23394.030127 eV Total energy + Delta-G solvation = -3818.843236 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.151 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.60657 -36.64617 -35.85023 -35.58716 -35.15563 -34.64952 -32.47733 -32.36830 -30.89562 -28.37906 -28.19286 -27.38473 -25.21863 -25.00081 -23.02775 -21.89567 -19.97155 -19.56178 -18.91354 -17.36210 -16.95919 -16.91715 -16.47296 -15.89382 -15.52787 -15.02629 -14.72291 -14.51392 -14.19335 -13.72753 -13.61527 -13.48846 -13.33928 -13.20342 -13.10908 -12.88384 -12.57154 -12.47287 -12.36512 -12.31173 -12.11247 -11.93496 -11.71177 -11.68139 -11.48508 -11.32449 -11.31882 -11.19166 -10.66380 -10.61694 -10.43801 -10.24262 -9.55183 -9.27876 -9.21530 -8.58815 -8.55682 -8.09234 -6.07281 -4.06460 1.17065 1.66910 2.24265 2.53109 3.26722 3.31325 3.33765 3.61005 4.14510 4.16935 4.37517 4.38476 4.56123 4.63671 4.71323 4.85330 4.96069 5.05331 5.07431 5.19356 5.23017 5.24720 5.28328 5.37087 5.49763 5.56640 5.57692 5.62352 5.68042 5.83000 5.93390 5.98646 6.00041 6.09859 6.26434 6.47406 6.55204 6.72379 6.83770 7.05685 7.19604 7.46767 7.59046 7.59224 8.50187 8.98055 9.51677 11.06439 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015662 B = 0.003625 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.384867 B = 7722.369223 C = 8862.452108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.129 3.871 3 N -0.371 5.371 4 N -0.300 5.300 5 C 0.094 3.906 6 C -0.078 4.078 7 C -0.248 4.248 8 C 0.202 3.798 9 N -1.131 6.131 10 S 2.782 3.218 11 O -0.964 6.964 12 O -0.993 6.993 13 N -0.991 5.991 14 C 0.093 3.907 15 C 0.228 3.772 16 C -0.531 4.531 17 H 0.078 0.922 18 C 0.072 3.928 19 N -0.896 5.896 20 Si 0.873 3.127 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.265 1.265 24 C 0.105 3.895 25 C -0.099 4.099 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.412 0.588 37 H 0.039 0.961 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.033 0.967 41 H 0.028 0.972 42 H 0.265 0.735 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.386 -12.842 -13.190 25.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.008 3.992 3 N -0.153 5.153 4 N -0.122 5.122 5 C -0.073 4.073 6 C -0.136 4.136 7 C -0.261 4.261 8 C 0.075 3.925 9 N -0.890 5.890 10 S 2.789 3.211 11 O -0.947 6.947 12 O -0.976 6.976 13 N -0.833 5.833 14 C -0.053 4.053 15 C 0.105 3.895 16 C -0.571 4.571 17 H 0.096 0.904 18 C -0.130 4.130 19 N -0.534 5.534 20 Si 0.700 3.300 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.190 1.190 24 C -0.024 4.024 25 C -0.157 4.157 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.244 0.756 37 H 0.058 0.942 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.051 0.949 41 H 0.046 0.954 42 H 0.075 0.925 43 H 0.101 0.899 44 H 0.111 0.889 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.000 -13.038 -14.430 25.831 hybrid contribution 0.026 -1.101 1.363 1.752 sum -16.974 -14.139 -13.067 25.666 Atomic orbital electron populations 1.22179 0.94280 1.03007 1.03279 1.21640 0.95210 0.78052 1.04346 1.48516 1.51682 1.11803 1.03314 1.77326 1.23563 1.03788 1.07538 1.22247 0.97451 0.94147 0.93456 1.20250 1.02010 0.93646 0.97729 1.19634 1.16102 0.96805 0.93518 1.19314 0.80343 0.95947 0.96878 1.56364 1.18560 1.32458 1.81620 1.01959 0.73150 0.73174 0.72813 1.93648 1.32850 1.82545 1.85700 1.93526 1.84728 1.51009 1.68366 1.57381 1.44808 1.57628 1.23501 1.21407 0.86706 0.93085 1.04151 1.19408 0.93670 0.93058 0.83380 1.21401 1.20895 1.03458 1.11305 0.90418 1.24878 0.94594 0.97014 0.96552 1.69895 1.25415 1.36311 1.21769 0.86913 0.79224 0.85183 0.78729 1.19850 1.21012 1.18965 1.20922 0.98921 0.91704 0.90817 1.20560 1.04061 1.02103 0.88969 0.90543 0.91951 0.91624 0.88781 0.88968 0.90263 0.90990 0.89881 0.89992 0.91578 0.75563 0.94225 0.90204 0.91204 0.94938 0.95365 0.92540 0.89919 0.88907 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 10.24 37.15 0.38 -0.58 16 2 C 0.13 0.88 6.96 -4.04 -0.03 0.85 16 3 N -0.37 -3.94 3.61 -57.14 -0.21 -4.15 16 4 N -0.30 -3.87 12.58 33.67 0.42 -3.45 16 5 C 0.09 1.17 7.22 -82.40 -0.59 0.57 16 6 C -0.08 -0.81 10.26 36.00 0.37 -0.44 16 7 C -0.25 -2.96 5.50 -105.05 -0.58 -3.53 16 8 C 0.20 2.45 6.15 -5.20 -0.03 2.42 16 9 N -1.13 -16.11 6.05 -11.66 -0.07 -16.18 16 10 S 2.78 53.31 6.10 -107.50 -0.66 52.66 16 11 O -0.96 -22.72 17.11 -57.17 -0.98 -23.70 16 12 O -0.99 -20.08 16.21 -57.17 -0.93 -21.00 16 13 N -0.99 -19.47 3.23 -123.05 -0.40 -19.87 16 14 C 0.09 1.50 10.68 59.85 0.64 2.13 16 15 C 0.23 5.25 4.15 -5.20 -0.02 5.23 16 16 C -0.53 -15.07 9.94 -34.44 -0.34 -15.41 16 17 H 0.08 2.43 8.06 -52.48 -0.42 2.01 16 18 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 19 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 20 Si 0.87 20.81 27.47 -169.99 -4.67 16.14 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 24 C 0.10 1.11 6.93 -82.27 -0.57 0.54 16 25 C -0.10 -0.76 9.73 36.01 0.35 -0.41 16 26 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.45 7.04 -51.93 -0.37 0.08 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.82 7.26 -51.93 -0.38 0.44 16 34 H 0.08 0.98 6.87 -51.93 -0.36 0.63 16 35 H 0.07 0.70 7.77 -51.93 -0.40 0.30 16 36 H 0.41 5.44 8.64 -34.47 -0.30 5.14 16 37 H 0.04 0.49 8.14 -51.92 -0.42 0.07 16 38 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 39 H 0.07 1.09 7.02 -51.93 -0.36 0.72 16 40 H 0.03 0.70 7.17 -51.93 -0.37 0.33 16 41 H 0.03 0.65 7.04 -51.93 -0.37 0.28 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 0.79 7.78 -51.93 -0.40 0.38 16 45 H 0.07 0.43 7.07 -51.93 -0.37 0.06 16 LS Contribution 383.50 15.07 5.78 5.78 Total: -1.00 -37.09 383.50 -8.52 -45.61 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -7.06 Total: 1.55 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -0.52 Total: -6.64 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: 0.52 Total: -70.39 kcal Atomic # 8 Polarization: -42.80 SS G_CDS: -1.90 Total: -44.70 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.67 Total: 16.14 kcal Atomic # 16 Polarization: 53.31 SS G_CDS: -0.66 Total: 52.66 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.09 -8.52 -45.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066935710.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.569 kcal (2) G-P(sol) polarization free energy of solvation -37.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds