Wall clock time and date at job start Tue Mar 31 2020 05:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.46868 * 2 1 4 4 C 1.36708 * 119.99930 * 268.00635 * 3 2 1 5 5 H 1.07999 * 119.99667 * 136.94976 * 4 3 2 6 6 C 1.39108 * 120.00321 * 316.95494 * 4 3 2 7 7 N 1.31326 * 120.00000 * 343.56323 * 6 4 3 8 8 Si 1.86794 * 120.00349 * 163.56443 * 6 4 3 9 9 H 1.48505 * 109.46993 * 89.99870 * 8 6 4 10 10 H 1.48503 * 109.47499 * 209.99854 * 8 6 4 11 11 H 1.48502 * 109.47227 * 329.99951 * 8 6 4 12 12 C 1.34772 * 120.00031 * 88.01498 * 3 2 1 13 13 O 1.21685 * 120.00193 * 5.29438 * 12 3 2 14 14 C 1.47175 * 119.99784 * 185.30024 * 12 3 2 15 15 N 1.30585 * 120.32135 * 354.20210 * 14 12 3 16 16 N 1.39874 * 120.83703 * 180.44714 * 15 14 12 17 17 C 1.39899 * 119.59995 * 164.73341 * 16 15 14 18 18 C 1.38913 * 120.07846 * 228.15918 * 17 16 15 19 19 C 1.38099 * 119.92840 * 179.97438 * 18 17 16 20 20 C 1.38301 * 120.07189 * 0.02692 * 19 18 17 21 21 C 1.38294 * 120.15070 * 359.95127 * 20 19 18 22 22 C 1.38106 * 120.07346 * 0.04673 * 21 20 19 23 23 C 1.34822 * 120.79972 * 345.01340 * 16 15 14 24 24 O 1.21286 * 120.28396 * 178.76921 * 23 16 15 25 25 C 1.51064 * 119.41981 * 358.57285 * 23 16 15 26 26 H 1.09002 * 109.62830 * 147.32971 * 25 23 16 27 27 C 1.53003 * 109.93043 * 268.07592 * 25 23 16 28 28 N 1.39830 * 120.31678 * 174.18322 * 14 12 3 29 29 H 1.08998 * 109.46779 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.46985 * 299.99747 * 1 2 3 31 31 H 1.09004 * 109.46725 * 60.00297 * 1 2 3 32 32 H 1.08998 * 109.47391 * 240.00171 * 2 1 3 33 33 H 1.08998 * 109.47389 * 119.99776 * 2 1 3 34 34 H 0.96997 * 120.00436 * 180.02562 * 7 6 4 35 35 H 1.07995 * 120.03346 * 359.70861 * 18 17 16 36 36 H 1.07997 * 119.96465 * 179.97438 * 19 18 17 37 37 H 1.08001 * 119.92494 * 179.97438 * 20 19 18 38 38 H 1.07996 * 119.96649 * 180.02562 * 21 20 19 39 39 H 1.07993 * 120.03547 * 179.97438 * 22 21 20 40 40 H 1.09000 * 109.47269 * 178.67263 * 27 25 23 41 41 H 1.08998 * 109.46881 * 298.67157 * 27 25 23 42 42 H 1.08992 * 109.46785 * 58.67122 * 27 25 23 43 43 H 0.97001 * 120.92370 * 30.11711 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2850 2.0120 -1.1832 5 1 1.9747 3.0358 -1.3312 6 6 2.9557 1.3350 -2.1966 7 7 3.6118 0.2302 -1.9256 8 14 2.9234 1.9976 -3.9428 9 1 4.0680 2.9224 -4.1426 10 1 3.0255 0.8689 -4.9025 11 1 1.6509 2.7282 -4.1715 12 6 2.2048 2.0301 1.1665 13 8 2.0606 1.4399 2.2208 14 6 2.5827 3.4525 1.1650 15 7 2.8491 4.0627 0.0417 16 7 3.2184 5.4118 0.0286 17 6 3.8025 5.9572 -1.1196 18 6 4.9581 6.7214 -1.0170 19 6 5.5324 7.2579 -2.1525 20 6 4.9581 7.0356 -3.3908 21 6 3.8080 6.2749 -3.4967 22 6 3.2285 5.7354 -2.3651 23 6 3.0233 6.1914 1.1111 24 8 3.3673 7.3544 1.0973 25 6 2.3684 5.6050 2.3396 26 1 2.7749 6.0792 3.2329 27 6 0.8555 5.8254 2.2797 28 7 2.6596 4.1636 2.3666 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 4.0799 -0.2417 -2.6321 35 1 5.4043 6.8992 -0.0498 36 1 6.4305 7.8524 -2.0734 37 1 5.4090 7.4566 -4.2773 38 1 3.3623 6.1029 -4.4652 39 1 2.3302 5.1419 -2.4484 40 1 0.3882 5.3790 3.1575 41 1 0.6446 6.8946 2.2600 42 1 0.4560 5.3596 1.3790 43 1 2.8979 3.7185 3.1948 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067687607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:23 Heat of formation + Delta-G solvation = 24.088523 kcal Electronic energy + Delta-G solvation = -29561.589745 eV Core-core repulsion = 25608.522186 eV Total energy + Delta-G solvation = -3953.067558 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.19801 -40.66368 -39.68446 -38.36469 -37.05776 -36.14591 -33.77747 -33.69773 -31.92336 -31.54405 -31.31882 -29.56495 -27.04277 -25.95705 -25.70337 -24.00783 -23.30249 -22.94085 -21.43191 -20.08857 -19.54952 -19.05908 -18.49081 -17.78831 -17.12485 -16.97974 -16.75725 -16.57873 -16.02998 -15.72838 -15.65608 -15.55161 -15.00555 -14.75352 -14.40734 -14.38058 -13.99907 -13.90205 -13.72580 -13.52576 -13.39980 -13.27226 -12.90923 -12.88538 -12.78679 -12.65244 -12.55973 -12.20494 -12.06161 -11.82927 -11.67081 -11.20306 -11.10109 -10.82329 -10.52919 -9.90180 -9.76045 -9.39653 -8.83669 -8.32706 -6.04295 0.19831 0.26452 0.43132 1.21262 1.28097 1.47540 1.49581 1.57674 1.88644 2.32578 2.42501 2.62632 2.91924 3.05719 3.30459 3.74502 3.89049 3.97648 4.02747 4.08484 4.23692 4.37137 4.42839 4.49869 4.51966 4.59473 4.60353 4.62630 4.76048 4.80852 5.03022 5.05755 5.07317 5.21242 5.26287 5.36558 5.48297 5.48798 5.54509 5.64180 5.64695 5.96769 6.02861 6.42470 6.48414 6.70945 6.99066 7.18370 7.44289 7.84286 8.70015 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.009832 B = 0.006899 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2847.254114 B = 4057.638138 C = 6329.643167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.108 3.892 3 N -0.403 5.403 4 C -0.324 4.324 5 H 0.121 0.879 6 C 0.016 3.984 7 N -0.885 5.885 8 Si 0.960 3.040 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.253 1.253 12 C 0.498 3.502 13 O -0.616 6.616 14 C 0.330 3.670 15 N -0.254 5.254 16 N -0.414 5.414 17 C 0.136 3.864 18 C -0.127 4.127 19 C -0.107 4.107 20 C -0.119 4.119 21 C -0.115 4.115 22 C -0.125 4.125 23 C 0.475 3.525 24 O -0.545 6.545 25 C 0.148 3.852 26 H 0.156 0.844 27 C -0.154 4.154 28 N -0.740 5.740 29 H 0.081 0.919 30 H 0.041 0.959 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.048 0.952 34 H 0.273 0.727 35 H 0.112 0.888 36 H 0.156 0.844 37 H 0.162 0.838 38 H 0.149 0.851 39 H 0.117 0.883 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.037 0.963 43 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.543 9.918 -0.674 10.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.015 4.015 3 N -0.119 5.119 4 C -0.454 4.454 5 H 0.138 0.862 6 C -0.189 4.189 7 N -0.522 5.522 8 Si 0.784 3.216 9 H -0.194 1.194 10 H -0.206 1.206 11 H -0.177 1.177 12 C 0.285 3.715 13 O -0.503 6.503 14 C 0.051 3.949 15 N -0.077 5.077 16 N -0.225 5.225 17 C 0.045 3.955 18 C -0.148 4.148 19 C -0.126 4.126 20 C -0.137 4.137 21 C -0.134 4.134 22 C -0.145 4.145 23 C 0.263 3.737 24 O -0.420 6.420 25 C 0.039 3.961 26 H 0.174 0.826 27 C -0.213 4.213 28 N -0.389 5.389 29 H 0.100 0.900 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.109 0.891 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.130 0.870 36 H 0.173 0.827 37 H 0.179 0.821 38 H 0.166 0.834 39 H 0.135 0.865 40 H 0.117 0.883 41 H 0.107 0.893 42 H 0.057 0.943 43 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -1.325 10.168 -1.207 10.325 hybrid contribution 0.276 -0.221 0.515 0.625 sum -1.049 9.947 -0.692 10.026 Atomic orbital electron populations 1.21952 0.94773 1.02442 1.01117 1.21489 0.94307 0.83218 1.02498 1.43611 1.51315 1.12210 1.04726 1.20271 1.35559 0.99695 0.89909 0.86210 1.26145 0.93279 0.95978 1.03496 1.69963 1.28837 1.18549 1.34841 0.85414 0.79952 0.78362 0.77910 1.19439 1.20644 1.17655 1.17721 0.84008 0.84791 0.85000 1.90659 1.60215 1.67682 1.31767 1.23230 0.94723 0.93431 0.83525 1.77103 1.20116 0.89800 1.20679 1.46669 1.56665 1.06688 1.12495 1.17742 0.93913 0.98150 0.85687 1.21143 0.93748 0.99831 1.00040 1.21319 1.00517 0.99385 0.91361 1.21567 0.95494 0.98172 0.98512 1.21381 0.96674 0.97127 0.98170 1.21207 1.00697 1.00709 0.91915 1.22351 0.79641 0.86394 0.85343 1.90681 1.51716 1.17185 1.82388 1.21632 0.97725 0.80256 0.96450 0.82645 1.22173 0.91939 1.03681 1.03537 1.45177 1.78005 1.06819 1.08856 0.89983 0.94007 0.92619 0.89128 0.93305 0.91719 0.87001 0.82660 0.82074 0.83357 0.86465 0.88282 0.89265 0.94348 0.73991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.30 10.23 71.98 0.74 -4.56 16 2 C 0.11 4.83 5.71 86.38 0.49 5.33 16 3 N -0.40 -19.53 2.47 -639.58 -1.58 -21.11 16 4 C -0.32 -15.87 7.72 84.14 0.65 -15.22 16 5 H 0.12 5.88 5.69 -2.91 -0.02 5.86 16 6 C 0.02 0.77 5.01 84.98 0.43 1.20 16 7 N -0.88 -45.52 11.58 21.69 0.25 -45.27 16 8 Si 0.96 38.69 29.58 68.60 2.03 40.72 16 9 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 10 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 11 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 12 C 0.50 23.74 7.61 86.59 0.66 24.39 16 13 O -0.62 -30.52 16.36 -4.30 -0.07 -30.59 16 14 C 0.33 13.94 7.36 135.44 1.00 14.94 16 15 N -0.25 -11.04 7.17 -50.24 -0.36 -11.40 16 16 N -0.41 -16.60 3.60 -303.03 -1.09 -17.69 16 17 C 0.14 5.23 5.68 38.18 0.22 5.45 16 18 C -0.13 -4.36 8.69 22.40 0.19 -4.17 16 19 C -0.11 -2.86 10.04 22.25 0.22 -2.64 16 20 C -0.12 -2.90 10.04 22.30 0.22 -2.68 16 21 C -0.12 -3.28 10.04 22.25 0.22 -3.06 16 22 C -0.13 -4.49 9.71 22.40 0.22 -4.28 16 23 C 0.48 17.26 6.78 87.77 0.59 17.85 16 24 O -0.55 -21.10 15.56 -3.05 -0.05 -21.15 16 25 C 0.15 4.22 3.87 44.25 0.17 4.39 16 26 H 0.16 3.36 8.14 -2.39 -0.02 3.34 16 27 C -0.15 -3.86 9.42 71.98 0.68 -3.19 16 28 N -0.74 -24.69 5.42 -319.45 -1.73 -26.43 16 29 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.09 4.31 5.77 -2.39 -0.01 4.30 16 33 H 0.05 2.27 7.41 -2.39 -0.02 2.25 16 34 H 0.27 13.30 8.31 -92.71 -0.77 12.53 16 35 H 0.11 3.94 7.29 -2.91 -0.02 3.92 16 36 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 37 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 38 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 39 H 0.12 4.42 8.06 -2.91 -0.02 4.39 16 40 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.04 1.15 8.08 -2.39 -0.02 1.13 16 43 H 0.42 12.76 8.75 -92.71 -0.81 11.95 16 Total: -1.00 -64.32 363.35 4.34 -59.97 By element: Atomic # 1 Polarization: 38.93 SS G_CDS: 0.24 Total: 39.18 kcal Atomic # 6 Polarization: 27.06 SS G_CDS: 6.70 Total: 33.76 kcal Atomic # 7 Polarization: -117.38 SS G_CDS: -4.51 Total: -121.89 kcal Atomic # 8 Polarization: -51.62 SS G_CDS: -0.12 Total: -51.74 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Total: -64.32 4.34 -59.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067687607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.061 kcal (2) G-P(sol) polarization free energy of solvation -64.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds