Wall clock time and date at job start Tue Mar 31 2020 05:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46494 * 109.47162 * 2 1 4 4 C 1.36802 * 119.99526 * 262.18135 * 3 2 1 5 5 H 1.08005 * 119.99322 * 195.09852 * 4 3 2 6 6 C 1.39051 * 120.00444 * 15.10528 * 4 3 2 7 7 N 1.31367 * 119.99531 * 12.12381 * 6 4 3 8 8 Si 1.86796 * 120.00319 * 192.12909 * 6 4 3 9 9 H 1.48497 * 109.47254 * 59.99461 * 8 6 4 10 10 H 1.48496 * 109.47027 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47064 * 299.99801 * 8 6 4 12 12 C 1.34783 * 120.00550 * 82.45459 * 3 2 1 13 13 O 1.21774 * 120.00254 * 184.36540 * 12 3 2 14 14 C 1.46120 * 119.99683 * 4.36848 * 12 3 2 15 15 N 1.29536 * 125.28536 * 353.26357 * 14 12 3 16 16 N 1.39341 * 113.96985 * 179.97438 * 15 14 12 17 17 C 1.39560 * 125.53575 * 179.97438 * 16 15 14 18 18 C 1.38981 * 120.08243 * 179.74958 * 17 16 15 19 19 C 1.38085 * 119.91882 * 179.79277 * 18 17 16 20 20 C 1.38297 * 120.08044 * 0.48509 * 19 18 17 21 21 C 1.38307 * 120.16602 * 359.74763 * 20 19 18 22 22 C 1.38079 * 120.07618 * 0.02562 * 21 20 19 23 23 C 1.47128 * 108.92877 * 0.02562 * 16 15 14 24 24 H 1.08998 * 110.57834 * 241.44816 * 23 16 15 25 25 C 1.50697 * 110.58139 * 118.54932 * 23 16 15 26 26 N 1.34776 * 120.00181 * 161.45797 * 25 23 16 27 27 O 1.21284 * 120.00000 * 341.44963 * 25 23 16 28 28 C 1.51189 * 125.28710 * 172.95467 * 14 12 3 29 29 H 1.08996 * 109.47356 * 299.99857 * 1 2 3 30 30 H 1.09000 * 109.47400 * 60.00655 * 1 2 3 31 31 H 1.09010 * 109.46866 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47312 * 239.99179 * 2 1 3 33 33 H 1.09008 * 109.46810 * 119.99563 * 2 1 3 34 34 H 0.97002 * 119.99736 * 179.97438 * 7 6 4 35 35 H 1.08004 * 120.03751 * 0.02562 * 18 17 16 36 36 H 1.08000 * 119.95921 * 180.23336 * 19 18 17 37 37 H 1.08003 * 119.91859 * 179.72440 * 20 19 18 38 38 H 1.07991 * 119.95984 * 179.97438 * 21 20 19 39 39 H 1.07998 * 120.04067 * 180.02562 * 22 21 20 40 40 H 0.97001 * 119.99299 * 359.97438 * 26 25 23 41 41 H 0.96995 * 120.00026 * 180.02562 * 26 25 23 42 42 H 1.08999 * 110.53273 * 298.62726 * 28 14 12 43 43 H 1.09007 * 110.52523 * 61.37869 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3982 1.9722 -1.1738 5 1 2.9786 2.8829 -1.1566 6 6 2.0372 1.4007 -2.3889 7 7 1.1416 0.4402 -2.4225 8 14 2.8256 1.9985 -3.9733 9 1 4.2947 1.7939 -3.9030 10 1 2.2739 1.2332 -5.1201 11 1 2.5353 3.4433 -4.1562 12 6 2.0985 2.0677 1.1571 13 8 2.4283 3.2399 1.1480 14 6 1.7897 1.4054 2.4224 15 7 1.3124 0.2072 2.5429 16 7 1.1067 -0.1902 3.8625 17 6 0.6031 -1.4269 4.2680 18 6 0.4484 -1.7065 5.6206 19 6 -0.0543 -2.9297 6.0180 20 6 -0.3941 -3.8798 5.0722 21 6 -0.2371 -3.6070 3.7254 22 6 0.2606 -2.3843 3.3205 23 6 1.5055 0.9063 4.7588 24 1 2.3213 0.5917 5.4096 25 6 0.3289 1.3796 5.5728 26 7 0.5313 2.0950 6.6970 27 8 -0.8002 1.1169 5.2163 28 6 1.9837 2.0097 3.7947 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.8894 0.0417 -3.2702 35 1 0.7174 -0.9665 6.3598 36 1 -0.1783 -3.1463 7.0687 37 1 -0.7829 -4.8373 5.3861 38 1 -0.5031 -4.3515 2.9898 39 1 0.3826 -2.1718 2.2687 40 1 1.4344 2.3049 6.9822 41 1 -0.2260 2.3994 7.2211 42 1 3.0353 2.2398 3.9658 43 1 1.3722 2.9049 3.9080 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068240880.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:15 Heat of formation + Delta-G solvation = 46.831157 kcal Electronic energy + Delta-G solvation = -29049.401010 eV Core-core repulsion = 25097.319647 eV Total energy + Delta-G solvation = -3952.081364 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.83279 -38.89285 -38.73991 -37.51634 -35.14438 -33.90271 -33.01557 -31.93942 -31.03797 -30.31064 -29.38444 -28.62109 -25.51870 -24.44858 -23.15535 -22.35108 -22.03627 -21.07361 -20.25886 -18.68055 -17.93392 -17.45947 -17.08424 -16.86027 -16.07607 -15.78630 -15.20117 -14.87835 -14.69790 -14.43375 -14.21282 -13.97984 -13.81949 -13.30663 -13.19375 -13.07427 -12.75995 -12.73703 -12.61900 -12.09966 -11.79332 -11.64004 -11.39095 -11.27120 -11.10559 -10.90212 -10.78338 -10.44027 -10.35063 -10.21665 -10.03307 -9.88093 -9.54285 -9.25539 -8.95315 -8.78321 -8.65917 -7.80335 -7.15825 -6.44319 -3.94813 1.42725 1.58260 2.11715 2.35187 2.65708 3.14531 3.17589 3.20636 3.33509 3.96413 4.03666 4.15795 4.27387 4.37266 4.69877 4.73123 4.86633 5.06925 5.08089 5.13324 5.32526 5.41614 5.58148 5.63331 5.73654 5.79427 5.86508 6.15034 6.27050 6.50913 6.56760 6.58962 6.72360 6.74040 6.79531 6.84761 6.94590 7.07545 7.08591 7.29691 7.45504 7.51278 7.78692 7.95771 8.08402 8.10446 8.40925 9.01721 9.25140 9.84848 10.47771 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015033 B = 0.004073 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.061596 B = 6873.127463 C = 8344.587409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.108 3.892 3 N -0.395 5.395 4 C -0.294 4.294 5 H 0.108 0.892 6 C 0.030 3.970 7 N -0.851 5.851 8 Si 0.936 3.064 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.270 1.270 12 C 0.481 3.519 13 O -0.595 6.595 14 C 0.067 3.933 15 N -0.196 5.196 16 N -0.459 5.459 17 C 0.248 3.752 18 C -0.181 4.181 19 C -0.081 4.081 20 C -0.174 4.174 21 C -0.081 4.081 22 C -0.159 4.159 23 C 0.091 3.909 24 H 0.106 0.894 25 C 0.508 3.492 26 N -0.854 5.854 27 O -0.514 6.514 28 C -0.095 4.095 29 H 0.025 0.975 30 H 0.079 0.921 31 H 0.036 0.964 32 H 0.105 0.895 33 H 0.062 0.938 34 H 0.272 0.728 35 H 0.109 0.891 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.123 0.877 39 H 0.135 0.865 40 H 0.402 0.598 41 H 0.403 0.597 42 H 0.112 0.888 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.873 -5.327 15.666 16.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.015 4.015 3 N -0.110 5.110 4 C -0.423 4.423 5 H 0.126 0.874 6 C -0.176 4.176 7 N -0.490 5.490 8 Si 0.762 3.238 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.195 1.195 12 C 0.269 3.731 13 O -0.481 6.481 14 C -0.125 4.125 15 N -0.005 5.005 16 N -0.256 5.256 17 C 0.149 3.851 18 C -0.204 4.204 19 C -0.100 4.100 20 C -0.193 4.193 21 C -0.099 4.099 22 C -0.180 4.180 23 C -0.019 4.019 24 H 0.123 0.877 25 C 0.289 3.711 26 N -0.420 5.420 27 O -0.387 6.387 28 C -0.136 4.136 29 H 0.044 0.956 30 H 0.098 0.902 31 H 0.055 0.945 32 H 0.123 0.877 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.127 0.873 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.141 0.859 39 H 0.153 0.847 40 H 0.230 0.770 41 H 0.234 0.766 42 H 0.130 0.870 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.051 -6.013 14.652 15.838 hybrid contribution 0.463 1.101 0.350 1.244 sum 0.412 -4.912 15.002 15.791 Atomic orbital electron populations 1.21859 0.96145 0.99660 1.01105 1.21934 0.95111 0.82528 1.01918 1.43838 1.50072 1.11704 1.05364 1.19888 1.30510 1.10056 0.81871 0.87405 1.25475 0.95611 0.96533 0.99932 1.70087 1.27186 1.24517 1.27211 0.85838 0.79353 0.79050 0.79602 1.19635 1.20692 1.19544 1.16264 0.89093 0.86251 0.81508 1.90681 1.56478 1.15186 1.85755 1.25134 0.99566 0.91375 0.96413 1.75624 1.12044 1.14499 0.98369 1.48244 1.65517 1.11435 1.00452 1.17217 0.92916 0.82243 0.92697 1.20431 1.08316 0.98714 0.92970 1.20730 0.97465 0.92711 0.99084 1.20908 1.05474 0.99806 0.93153 1.20943 0.97179 0.95962 0.95854 1.20837 1.03999 0.93315 0.99853 1.22203 0.95336 0.89959 0.94432 0.87679 1.20859 0.91067 0.78026 0.81109 1.43823 1.12521 1.58309 1.27307 1.90814 1.24022 1.55014 1.68865 1.21806 1.04224 0.97715 0.89814 0.95581 0.90198 0.94513 0.87741 0.92008 0.91687 0.87272 0.86352 0.86549 0.85943 0.84737 0.77004 0.76628 0.87016 0.87964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.16 37.16 0.34 -2.62 16 2 C 0.11 2.52 4.87 -4.05 -0.02 2.51 16 3 N -0.39 -10.10 2.64 -116.50 -0.31 -10.41 16 4 C -0.29 -7.84 9.41 -15.03 -0.14 -7.98 16 5 H 0.11 2.97 7.32 -52.48 -0.38 2.58 16 6 C 0.03 0.74 5.14 -17.45 -0.09 0.66 16 7 N -0.85 -21.09 8.16 55.50 0.45 -20.64 16 8 Si 0.94 19.54 29.57 -169.99 -5.03 14.51 16 9 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 10 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 11 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 12 C 0.48 11.98 7.51 -13.10 -0.10 11.88 16 13 O -0.59 -16.23 16.57 5.12 0.08 -16.15 16 14 C 0.07 1.39 6.83 -80.16 -0.55 0.84 16 15 N -0.20 -3.92 6.31 34.90 0.22 -3.70 16 16 N -0.46 -8.01 3.52 -52.30 -0.18 -8.19 16 17 C 0.25 4.14 6.27 -83.79 -0.53 3.62 16 18 C -0.18 -2.60 8.84 -39.36 -0.35 -2.95 16 19 C -0.08 -1.01 10.04 -39.62 -0.40 -1.41 16 20 C -0.17 -2.14 10.04 -39.53 -0.40 -2.54 16 21 C -0.08 -1.10 10.04 -39.61 -0.40 -1.50 16 22 C -0.16 -2.60 9.64 -39.36 -0.38 -2.98 16 23 C 0.09 1.27 3.19 -68.15 -0.22 1.05 16 24 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 25 C 0.51 7.01 5.53 -10.99 -0.06 6.95 16 26 N -0.85 -7.12 8.87 31.22 0.28 -6.84 16 27 O -0.51 -9.69 16.86 5.55 0.09 -9.59 16 28 C -0.09 -1.48 6.40 -27.05 -0.17 -1.65 16 29 H 0.03 0.60 6.91 -51.93 -0.36 0.25 16 30 H 0.08 2.00 6.37 -51.93 -0.33 1.67 16 31 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 32 H 0.10 2.56 5.77 -51.93 -0.30 2.26 16 33 H 0.06 1.37 5.40 -51.92 -0.28 1.09 16 34 H 0.27 6.37 8.31 -40.82 -0.34 6.04 16 35 H 0.11 1.40 6.40 -52.48 -0.34 1.07 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 37 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 38 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 39 H 0.13 2.36 7.66 -52.49 -0.40 1.96 16 40 H 0.40 1.96 8.83 -40.82 -0.36 1.60 16 41 H 0.40 2.92 8.93 -40.82 -0.36 2.56 16 42 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 43 H 0.10 1.60 7.73 -51.93 -0.40 1.20 16 LS Contribution 354.96 15.07 5.35 5.35 Total: -1.00 -33.27 354.96 -7.68 -40.96 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -5.19 Total: 10.84 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -3.45 Total: 3.87 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: 0.46 Total: -49.78 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: 0.18 Total: -25.74 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.51 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.27 -7.68 -40.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068240880.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.787 kcal (2) G-P(sol) polarization free energy of solvation -33.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds