Wall clock time and date at job start Tue Mar 31 2020 05:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47319 * 2 1 4 4 C 1.36796 * 119.99703 * 266.36123 * 3 2 1 5 5 H 1.08000 * 119.99909 * 140.75034 * 4 3 2 6 6 C 1.39056 * 120.00054 * 320.47238 * 4 3 2 7 7 N 1.31370 * 120.00173 * 340.76778 * 6 4 3 8 8 Si 1.86797 * 120.00138 * 160.76121 * 6 4 3 9 9 H 1.48501 * 109.47238 * 90.00232 * 8 6 4 10 10 H 1.48505 * 109.47466 * 210.00351 * 8 6 4 11 11 H 1.48497 * 109.47275 * 330.00371 * 8 6 4 12 12 C 1.34772 * 120.00135 * 86.35835 * 3 2 1 13 13 O 1.21779 * 119.99661 * 174.57846 * 12 3 2 14 14 C 1.46117 * 120.00334 * 354.58255 * 12 3 2 15 15 N 1.29542 * 125.28526 * 354.38932 * 14 12 3 16 16 N 1.39333 * 113.97074 * 179.97438 * 15 14 12 17 17 C 1.39565 * 125.53384 * 179.97438 * 16 15 14 18 18 C 1.38985 * 120.08022 * 179.74984 * 17 16 15 19 19 C 1.38077 * 119.91668 * 179.72594 * 18 17 16 20 20 C 1.38305 * 120.08206 * 0.54547 * 19 18 17 21 21 C 1.38301 * 120.16277 * 359.72492 * 20 19 18 22 22 C 1.38086 * 120.08032 * 0.02562 * 21 20 19 23 23 C 1.47117 * 108.92989 * 359.97438 * 16 15 14 24 24 H 1.09004 * 110.58264 * 118.55470 * 23 16 15 25 25 C 1.50701 * 110.58517 * 241.45174 * 23 16 15 26 26 N 1.34775 * 119.99973 * 198.54993 * 25 23 16 27 27 O 1.21278 * 119.99779 * 18.54819 * 25 23 16 28 28 C 1.51190 * 125.29068 * 174.08782 * 14 12 3 29 29 H 1.08999 * 109.47218 * 300.00487 * 1 2 3 30 30 H 1.09003 * 109.46640 * 60.00108 * 1 2 3 31 31 H 1.08996 * 109.46929 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47218 * 239.99512 * 2 1 3 33 33 H 1.09003 * 109.46640 * 119.99891 * 2 1 3 34 34 H 0.96999 * 120.00230 * 179.97438 * 7 6 4 35 35 H 1.07999 * 120.03764 * 359.97438 * 18 17 16 36 36 H 1.07997 * 119.96434 * 180.29774 * 19 18 17 37 37 H 1.07998 * 119.91908 * 179.74935 * 20 19 18 38 38 H 1.07999 * 119.96284 * 180.02562 * 21 20 19 39 39 H 1.07999 * 120.03977 * 180.02562 * 22 21 20 40 40 H 0.97001 * 120.00293 * 359.97438 * 26 25 23 41 41 H 0.97004 * 119.99620 * 180.02562 * 26 25 23 42 42 H 1.08998 * 110.52638 * 298.64123 * 28 14 12 43 43 H 1.09001 * 110.52574 * 61.39265 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3173 2.0009 -1.1823 5 1 2.0659 3.0415 -1.3252 6 6 2.9500 1.2927 -2.1981 7 7 3.5937 0.1814 -1.9215 8 14 2.8844 1.9213 -3.9559 9 1 4.0394 2.8214 -4.2031 10 1 2.9424 0.7723 -4.8950 11 1 1.6194 2.6698 -4.1671 12 6 2.1732 2.0412 1.1648 13 8 2.6714 3.1524 1.1734 14 6 1.7433 1.4236 2.4173 15 7 1.1111 0.2975 2.5179 16 7 0.8161 -0.0709 3.8289 17 6 0.1443 -1.2322 4.2135 18 6 -0.0859 -1.4904 5.5597 19 6 -0.7559 -2.6376 5.9361 20 6 -1.1879 -3.5346 4.9761 21 6 -0.9558 -3.2838 3.6360 22 6 -0.2909 -2.1362 3.2518 23 6 1.3279 0.9630 4.7418 24 1 0.5118 1.4130 5.3072 25 6 2.3622 0.3835 5.6722 26 7 2.6839 1.0311 6.8095 27 8 2.9050 -0.6657 5.3975 28 6 1.9729 1.9965 3.7975 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.0347 -0.3129 -2.6301 35 1 0.2554 -0.7927 6.3100 36 1 -0.9394 -2.8366 6.9816 37 1 -1.7082 -4.4330 5.2738 38 1 -1.2949 -3.9863 2.8891 39 1 -0.1103 -1.9407 2.2051 40 1 2.2500 1.8705 7.0291 41 1 3.3499 0.6583 7.4082 42 1 3.0398 2.0882 4.0006 43 1 1.4793 2.9632 3.8970 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068240881.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:18 Heat of formation + Delta-G solvation = 37.512790 kcal Electronic energy + Delta-G solvation = -28990.503729 eV Core-core repulsion = 25038.018291 eV Total energy + Delta-G solvation = -3952.485438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.88531 -38.90117 -38.77415 -37.52115 -35.05179 -33.92143 -33.07486 -32.10832 -31.09368 -30.36539 -29.42751 -28.68997 -25.58356 -24.48422 -23.21416 -22.43647 -22.09260 -21.09563 -20.30258 -18.67543 -17.94990 -17.48543 -17.09482 -16.77077 -16.05604 -15.84915 -15.22874 -15.04043 -14.71511 -14.55294 -14.34734 -13.92755 -13.76486 -13.34163 -13.29697 -13.11575 -12.93819 -12.79002 -12.60047 -12.22838 -11.82713 -11.78413 -11.47630 -11.37285 -11.11918 -10.94669 -10.94370 -10.52068 -10.42472 -10.22092 -10.11689 -9.89610 -9.74330 -9.36356 -8.92854 -8.82375 -8.72830 -7.56708 -7.19680 -6.45180 -4.08490 1.38348 1.54130 2.08369 2.32158 2.61208 3.14772 3.21422 3.25860 3.31408 3.97992 4.01229 4.18780 4.23409 4.35666 4.66255 4.71156 4.82830 4.99406 5.04245 5.09445 5.28558 5.38562 5.54001 5.60861 5.69823 5.75067 5.82886 6.08188 6.18027 6.26830 6.39173 6.46462 6.52309 6.55188 6.67903 6.72018 6.82513 6.91314 7.00501 7.06058 7.32704 7.45352 7.49465 8.00793 8.06338 8.15826 8.40755 9.03918 9.23178 9.86500 10.56906 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.014813 B = 0.004053 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.758742 B = 6907.152434 C = 8235.463533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.097 3.903 3 N -0.398 5.398 4 C -0.306 4.306 5 H 0.097 0.903 6 C 0.042 3.958 7 N -0.852 5.852 8 Si 0.924 3.076 9 H -0.274 1.274 10 H -0.281 1.281 11 H -0.266 1.266 12 C 0.504 3.496 13 O -0.579 6.579 14 C 0.062 3.938 15 N -0.191 5.191 16 N -0.458 5.458 17 C 0.246 3.754 18 C -0.179 4.179 19 C -0.081 4.081 20 C -0.172 4.172 21 C -0.081 4.081 22 C -0.159 4.159 23 C 0.091 3.909 24 H 0.107 0.893 25 C 0.507 3.493 26 N -0.854 5.854 27 O -0.514 6.514 28 C -0.096 4.096 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.102 0.898 33 H 0.070 0.930 34 H 0.273 0.727 35 H 0.110 0.890 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.123 0.877 39 H 0.135 0.865 40 H 0.402 0.598 41 H 0.403 0.597 42 H 0.102 0.898 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.358 -2.748 15.361 17.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 N -0.114 5.114 4 C -0.436 4.436 5 H 0.114 0.886 6 C -0.165 4.165 7 N -0.488 5.488 8 Si 0.750 3.250 9 H -0.200 1.200 10 H -0.206 1.206 11 H -0.191 1.191 12 C 0.292 3.708 13 O -0.462 6.462 14 C -0.131 4.131 15 N 0.000 5.000 16 N -0.256 5.256 17 C 0.148 3.852 18 C -0.202 4.202 19 C -0.100 4.100 20 C -0.192 4.192 21 C -0.100 4.100 22 C -0.180 4.180 23 C -0.019 4.019 24 H 0.125 0.875 25 C 0.289 3.711 26 N -0.419 5.419 27 O -0.387 6.387 28 C -0.137 4.137 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.119 0.881 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.128 0.872 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.141 0.859 39 H 0.153 0.847 40 H 0.230 0.770 41 H 0.234 0.766 42 H 0.121 0.879 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.160 -3.857 14.431 17.021 hybrid contribution 0.571 0.978 0.324 1.178 sum -7.589 -2.879 14.756 16.841 Atomic orbital electron populations 1.22043 0.97524 1.00310 1.01066 1.21770 0.92482 0.84467 1.03969 1.43495 1.51784 1.12093 1.04068 1.19533 1.37490 0.97980 0.88547 0.88588 1.25540 0.93736 0.96265 1.00991 1.69924 1.28473 1.16500 1.33928 0.85980 0.79256 0.78535 0.81264 1.20010 1.20596 1.19057 1.16799 0.84999 0.87936 0.81108 1.90697 1.49324 1.20755 1.85406 1.25285 0.98425 0.92721 0.96673 1.75551 1.11638 1.13493 0.99326 1.48204 1.57068 1.19916 1.00414 1.17219 0.91097 0.83970 0.92892 1.20440 1.06323 1.00398 0.93065 1.20741 0.96862 0.93311 0.99083 1.20919 1.04697 1.00455 0.93119 1.20944 0.96936 0.96088 0.96013 1.20844 1.02755 0.94654 0.99788 1.22222 0.96110 0.90217 0.93336 0.87510 1.20860 0.83520 0.84900 0.81868 1.43822 1.46330 1.27700 1.24078 1.90818 1.52347 1.22121 1.73395 1.21827 1.03418 0.98566 0.89867 0.93110 0.93206 0.93294 0.88052 0.91169 0.91706 0.87213 0.86294 0.86499 0.85919 0.84735 0.76986 0.76587 0.87928 0.86847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.65 37.16 0.36 -2.59 16 2 C 0.10 2.23 5.22 -4.04 -0.02 2.21 16 3 N -0.40 -10.21 2.50 -116.49 -0.29 -10.50 16 4 C -0.31 -8.31 8.84 -15.03 -0.13 -8.45 16 5 H 0.10 2.65 7.84 -52.49 -0.41 2.24 16 6 C 0.04 1.09 4.96 -17.45 -0.09 1.00 16 7 N -0.85 -22.82 11.52 55.50 0.64 -22.18 16 8 Si 0.92 19.94 29.60 -169.99 -5.03 14.91 16 9 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 10 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 12 C 0.50 12.59 7.55 -13.10 -0.10 12.49 16 13 O -0.58 -15.87 16.85 5.12 0.09 -15.78 16 14 C 0.06 1.26 6.84 -80.16 -0.55 0.71 16 15 N -0.19 -3.72 5.94 34.90 0.21 -3.51 16 16 N -0.46 -7.80 3.52 -52.30 -0.18 -7.98 16 17 C 0.25 4.01 6.28 -83.79 -0.53 3.48 16 18 C -0.18 -2.51 8.83 -39.36 -0.35 -2.85 16 19 C -0.08 -0.99 10.04 -39.62 -0.40 -1.38 16 20 C -0.17 -2.06 10.04 -39.53 -0.40 -2.45 16 21 C -0.08 -1.06 10.04 -39.61 -0.40 -1.46 16 22 C -0.16 -2.51 9.64 -39.36 -0.38 -2.89 16 23 C 0.09 1.25 3.22 -68.15 -0.22 1.03 16 24 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 25 C 0.51 6.90 5.48 -10.99 -0.06 6.84 16 26 N -0.85 -7.00 8.87 31.22 0.28 -6.72 16 27 O -0.51 -9.60 16.84 5.56 0.09 -9.50 16 28 C -0.10 -1.48 6.38 -27.05 -0.17 -1.66 16 29 H 0.05 0.99 6.44 -51.93 -0.33 0.65 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.10 2.52 5.63 -51.93 -0.29 2.23 16 33 H 0.07 1.64 5.77 -51.93 -0.30 1.34 16 34 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 35 H 0.11 1.38 6.37 -52.49 -0.33 1.04 16 36 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.13 2.24 7.66 -52.49 -0.40 1.84 16 40 H 0.40 1.91 8.83 -40.82 -0.36 1.55 16 41 H 0.40 2.88 8.93 -40.82 -0.36 2.52 16 42 H 0.10 1.59 7.72 -51.93 -0.40 1.19 16 43 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 360.22 15.07 5.43 5.43 Total: -1.00 -34.61 360.22 -7.50 -42.11 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -5.29 Total: 9.70 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -3.43 Total: 4.03 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: 0.65 Total: -50.90 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: 0.18 Total: -25.28 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.91 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.61 -7.50 -42.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068240881.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.621 kcal (2) G-P(sol) polarization free energy of solvation -34.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds