Wall clock time and date at job start Tue Mar 31 2020 06:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 120.00192 * 2 1 4 4 C 1.50695 * 109.46853 * 269.99360 * 3 2 1 5 5 H 1.08006 * 120.00113 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00066 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99875 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00320 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47346 * 270.00612 * 8 6 4 10 10 H 1.48496 * 109.47216 * 150.00593 * 8 6 4 11 11 H 1.48499 * 109.46936 * 30.00659 * 8 6 4 12 12 C 1.34776 * 119.99770 * 179.97438 * 2 1 3 13 13 O 1.21726 * 120.00184 * 176.11575 * 12 2 1 14 14 C 1.46285 * 120.00034 * 356.11413 * 12 2 1 15 15 N 1.29431 * 125.28214 * 5.97772 * 14 12 2 16 16 N 1.39337 * 113.99508 * 179.97438 * 15 14 12 17 17 C 1.39609 * 125.54215 * 179.97438 * 16 15 14 18 18 C 1.38968 * 120.07861 * 179.69121 * 17 16 15 19 19 C 1.38081 * 119.91534 * 179.76723 * 18 17 16 20 20 C 1.38301 * 120.08175 * 0.51041 * 19 18 17 21 21 C 1.38297 * 120.15858 * 359.74594 * 20 19 18 22 22 C 1.38084 * 120.08283 * 0.02562 * 21 20 19 23 23 C 1.47131 * 108.91789 * 359.97438 * 16 15 14 24 24 H 1.09003 * 110.58355 * 241.30336 * 23 16 15 25 25 C 1.50698 * 110.58353 * 118.54916 * 23 16 15 26 26 N 1.34777 * 120.00131 * 161.45447 * 25 23 16 27 27 O 1.21279 * 120.00390 * 341.45740 * 25 23 16 28 28 C 1.51198 * 125.28178 * 185.66300 * 14 12 2 29 29 H 1.09003 * 109.47030 * 95.75334 * 1 2 3 30 30 H 1.09003 * 109.47386 * 215.75550 * 1 2 3 31 31 H 1.09005 * 109.47409 * 335.75747 * 1 2 3 32 32 H 1.08996 * 109.47024 * 149.99764 * 3 2 1 33 33 H 1.09000 * 109.46939 * 29.99657 * 3 2 1 34 34 H 0.97005 * 120.00309 * 359.97438 * 7 6 4 35 35 H 1.08004 * 120.04050 * 0.02865 * 18 17 16 36 36 H 1.08003 * 119.96112 * 180.28264 * 19 18 17 37 37 H 1.08006 * 119.91704 * 179.72302 * 20 19 18 38 38 H 1.08003 * 119.95685 * 179.97438 * 21 20 19 39 39 H 1.07993 * 120.04566 * 180.02562 * 22 21 20 40 40 H 0.97004 * 119.99789 * 0.02562 * 26 25 23 41 41 H 0.96994 * 120.00217 * 180.02562 * 26 25 23 42 42 H 1.08996 * 110.52861 * 298.66669 * 28 14 12 43 43 H 1.08999 * 110.52719 * 61.41573 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7036 -1.4208 5 1 2.0975 1.0959 -2.2417 6 6 3.1262 2.8777 -1.6728 7 7 3.5534 3.6179 -0.6732 8 14 3.4370 3.4172 -3.4340 9 1 4.7320 2.8605 -3.9010 10 1 3.4846 4.9001 -3.4964 11 1 2.3416 2.9200 -4.3047 12 6 2.1388 -1.1672 0.0005 13 8 3.3540 -1.1685 -0.0709 14 6 1.4098 -2.4326 0.0869 15 7 0.1219 -2.5569 0.0567 16 7 -0.3227 -3.8737 0.1561 17 6 -1.6577 -4.2823 0.1493 18 6 -1.9735 -5.6319 0.2490 19 6 -3.2952 -6.0318 0.2469 20 6 -4.3036 -5.0920 0.1351 21 6 -3.9928 -3.7485 0.0303 22 6 -2.6736 -3.3407 0.0365 23 6 0.8435 -4.7637 0.2692 24 1 0.8768 -5.4601 -0.5686 25 6 0.8141 -5.5118 1.5771 26 7 1.5529 -6.6283 1.7315 27 8 0.1256 -5.1091 2.4908 28 6 2.0443 -3.7987 0.2187 29 1 -0.3633 -0.1030 -1.0225 30 1 -0.3634 -0.8340 0.6005 31 1 -0.3634 0.9371 0.4220 32 1 3.1499 1.1383 0.5139 33 1 1.6084 2.0284 0.5138 34 1 3.3917 3.3380 0.2414 35 1 -1.1864 -6.3667 0.3324 36 1 -3.5416 -7.0801 0.3290 37 1 -5.3364 -5.4082 0.1291 38 1 -4.7829 -3.0174 -0.0573 39 1 -2.4316 -2.2914 -0.0450 40 1 2.1039 -6.9502 1.0009 41 1 1.5338 -7.1100 2.5732 42 1 2.6730 -4.0130 -0.6454 43 1 2.6236 -3.8638 1.1397 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071853082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:08 Heat of formation + Delta-G solvation = 30.901280 kcal Electronic energy + Delta-G solvation = -28175.776722 eV Core-core repulsion = 24223.004587 eV Total energy + Delta-G solvation = -3952.772135 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.26224 -39.32931 -39.06571 -37.97552 -35.12149 -34.17049 -33.49751 -32.74687 -31.48926 -30.72814 -29.13757 -27.46593 -26.06734 -24.81988 -23.99929 -22.79032 -22.33262 -21.22286 -20.60779 -18.82422 -18.11809 -17.79787 -17.35797 -16.96341 -16.42677 -16.20903 -15.62327 -15.29712 -14.99033 -14.86402 -14.50482 -14.23637 -13.74848 -13.73307 -13.52066 -13.42373 -13.30654 -13.10446 -12.50962 -12.41425 -12.30486 -12.05640 -11.97585 -11.65324 -11.35627 -11.19835 -10.97318 -10.60662 -10.54891 -10.21407 -10.12771 -10.11873 -9.72059 -9.46477 -9.15181 -9.07154 -8.39749 -7.75474 -7.52926 -6.40400 -4.12583 0.97770 1.28916 1.68520 1.97032 2.24804 3.01622 3.43880 3.47506 3.55285 3.58355 3.63783 3.76831 3.81623 4.15159 4.42067 4.49340 4.53182 4.72969 4.79332 4.82892 5.04324 5.26992 5.29500 5.32044 5.37761 5.39471 5.49733 5.67658 5.80109 5.92306 6.08366 6.24253 6.32248 6.32390 6.34781 6.46458 6.62370 6.74131 6.81921 7.02525 7.10702 7.27696 7.53760 7.80638 7.98481 8.11126 8.39044 8.69506 8.81696 9.56557 10.97259 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015682 B = 0.003204 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.007311 B = 8736.058011 C = 9881.522056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.571 5.571 3 C 0.235 3.765 4 C -0.606 4.606 5 H 0.053 0.947 6 C 0.021 3.979 7 N -0.909 5.909 8 Si 1.075 2.925 9 H -0.287 1.287 10 H -0.283 1.283 11 H -0.289 1.289 12 C 0.576 3.424 13 O -0.528 6.528 14 C 0.048 3.952 15 N -0.175 5.175 16 N -0.453 5.453 17 C 0.237 3.763 18 C -0.173 4.173 19 C -0.081 4.081 20 C -0.165 4.165 21 C -0.081 4.081 22 C -0.157 4.157 23 C 0.091 3.909 24 H 0.113 0.887 25 C 0.508 3.492 26 N -0.851 5.851 27 O -0.515 6.515 28 C -0.097 4.097 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.036 0.964 33 H 0.027 0.973 34 H 0.268 0.732 35 H 0.112 0.888 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.133 0.867 40 H 0.403 0.597 41 H 0.405 0.595 42 H 0.120 0.880 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.876 -23.219 1.958 25.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.301 5.301 3 C 0.116 3.884 4 C -0.645 4.645 5 H 0.072 0.928 6 C -0.184 4.184 7 N -0.545 5.545 8 Si 0.903 3.097 9 H -0.213 1.213 10 H -0.209 1.209 11 H -0.215 1.215 12 C 0.359 3.641 13 O -0.402 6.402 14 C -0.147 4.147 15 N 0.015 4.985 16 N -0.253 5.253 17 C 0.141 3.859 18 C -0.195 4.195 19 C -0.099 4.099 20 C -0.184 4.184 21 C -0.100 4.100 22 C -0.178 4.178 23 C -0.019 4.019 24 H 0.130 0.870 25 C 0.289 3.711 26 N -0.417 5.417 27 O -0.388 6.388 28 C -0.137 4.137 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.045 0.955 34 H 0.078 0.922 35 H 0.130 0.870 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.144 0.856 39 H 0.151 0.849 40 H 0.232 0.768 41 H 0.237 0.763 42 H 0.138 0.862 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.954 -21.110 1.421 23.826 hybrid contribution 0.216 -2.255 1.017 2.483 sum -10.738 -23.365 2.438 25.830 Atomic orbital electron populations 1.22103 0.79955 1.02633 1.02083 1.47908 1.07130 1.06829 1.68265 1.19507 0.92014 0.78343 0.98586 1.22238 1.40857 1.09680 0.91692 0.92833 1.25822 0.93246 0.93194 1.06106 1.70776 1.44032 1.39594 1.00118 0.83455 0.76343 0.76182 0.73707 1.21313 1.20902 1.21494 1.16560 0.86514 0.81359 0.79646 1.90853 1.12358 1.86095 1.50940 1.25053 0.90465 0.96694 1.02443 1.75250 1.14318 1.00119 1.08809 1.48156 1.02708 1.00284 1.74103 1.17232 0.79853 0.92914 0.95944 1.20465 0.97197 0.92937 1.08917 1.20796 0.91687 0.99404 0.98046 1.20994 0.99092 0.93197 1.05163 1.20975 0.95518 0.95998 0.97460 1.20792 0.91531 0.99631 1.05834 1.22256 0.87998 0.94965 0.96659 0.86973 1.20748 0.79554 0.80971 0.89799 1.43808 1.49259 1.28526 1.20075 1.90821 1.39886 1.66356 1.41748 1.21856 0.96422 0.88971 1.06456 0.92706 0.89798 0.91389 0.94574 0.95475 0.92177 0.86996 0.85973 0.86184 0.85643 0.84910 0.76808 0.76349 0.86182 0.87482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.37 9.65 59.84 0.58 1.95 16 2 N -0.57 -12.62 2.86 -184.66 -0.53 -13.14 16 3 C 0.23 6.12 4.48 -5.20 -0.02 6.09 16 4 C -0.61 -17.36 9.39 -34.44 -0.32 -17.68 16 5 H 0.05 1.56 7.81 -52.48 -0.41 1.15 16 6 C 0.02 0.60 5.46 -17.82 -0.10 0.50 16 7 N -0.91 -27.58 13.65 55.43 0.76 -26.82 16 8 Si 1.08 25.58 29.90 -169.99 -5.08 20.50 16 9 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.58 12.29 7.63 -13.03 -0.10 12.19 16 13 O -0.53 -12.92 16.54 5.17 0.09 -12.83 16 14 C 0.05 0.80 7.03 -80.13 -0.56 0.24 16 15 N -0.18 -2.80 7.63 34.92 0.27 -2.54 16 16 N -0.45 -6.36 3.52 -52.29 -0.18 -6.55 16 17 C 0.24 3.22 6.27 -83.78 -0.53 2.69 16 18 C -0.17 -2.00 8.84 -39.37 -0.35 -2.35 16 19 C -0.08 -0.80 10.04 -39.62 -0.40 -1.20 16 20 C -0.16 -1.62 10.04 -39.54 -0.40 -2.01 16 21 C -0.08 -0.87 10.04 -39.62 -0.40 -1.27 16 22 C -0.16 -2.04 9.64 -39.37 -0.38 -2.42 16 23 C 0.09 0.99 3.19 -68.15 -0.22 0.77 16 24 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 25 C 0.51 5.54 5.53 -10.99 -0.06 5.48 16 26 N -0.85 -5.04 8.87 31.22 0.28 -4.77 16 27 O -0.51 -8.12 16.86 5.56 0.09 -8.03 16 28 C -0.10 -1.18 6.40 -27.05 -0.17 -1.35 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 1.40 5.27 -51.93 -0.27 1.13 16 31 H 0.07 1.16 7.83 -51.93 -0.41 0.75 16 32 H 0.04 1.03 7.34 -51.93 -0.38 0.65 16 33 H 0.03 0.70 7.72 -51.93 -0.40 0.30 16 34 H 0.27 8.05 7.22 -40.82 -0.29 7.75 16 35 H 0.11 1.14 6.40 -52.48 -0.34 0.80 16 36 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 37 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 38 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 39 H 0.13 1.76 7.66 -52.49 -0.40 1.36 16 40 H 0.40 1.07 8.83 -40.82 -0.36 0.71 16 41 H 0.41 2.04 8.93 -40.82 -0.36 1.68 16 42 H 0.12 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.11 1.26 7.73 -51.93 -0.40 0.86 16 LS Contribution 366.14 15.07 5.52 5.52 Total: -1.00 -37.58 366.14 -7.59 -45.16 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -5.36 Total: 1.86 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -3.43 Total: 1.63 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.59 Total: -53.81 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: 0.18 Total: -20.86 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -5.08 Total: 20.50 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.58 -7.59 -45.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071853082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.064 kcal (2) G-P(sol) polarization free energy of solvation -37.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds