Wall clock time and date at job start Tue Mar 31 2020 05:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46905 * 109.46427 * 2 1 4 4 C 1.46901 * 111.00277 * 295.20274 * 3 2 1 5 5 C 1.50696 * 109.46910 * 288.26124 * 4 3 2 6 6 O 1.21296 * 120.00579 * 354.30214 * 5 4 3 7 7 N 1.34782 * 120.00019 * 174.30695 * 5 4 3 8 8 C 1.37095 * 120.00394 * 180.02562 * 7 5 4 9 9 H 1.08004 * 119.99582 * 359.97438 * 8 7 5 10 10 C 1.38947 * 120.00018 * 179.97438 * 8 7 5 11 11 N 1.31407 * 120.00123 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99865 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47363 * 359.97438 * 12 10 8 14 14 H 1.48505 * 109.47269 * 119.99897 * 12 10 8 15 15 H 1.48499 * 109.47237 * 239.99761 * 12 10 8 16 16 C 1.46902 * 111.00288 * 59.16259 * 3 2 1 17 17 C 1.50694 * 109.47263 * 66.04182 * 16 3 2 18 18 N 1.29842 * 118.31822 * 359.97438 * 17 16 3 19 19 C 1.35655 * 121.61760 * 180.02562 * 18 17 16 20 20 C 1.39650 * 121.64810 * 179.97438 * 19 18 17 21 21 C 1.37660 * 119.68150 * 180.02562 * 20 19 18 22 22 C 1.38888 * 120.82502 * 0.02562 * 21 20 19 23 23 C 1.37763 * 120.56723 * 359.93632 * 22 21 20 24 24 C 1.39335 * 119.51362 * 0.08600 * 23 22 21 25 25 C 1.47046 * 121.92951 * 179.64865 * 24 23 22 26 26 O 1.21733 * 121.29739 * 0.28148 * 25 24 23 27 27 N 1.35345 * 117.40344 * 179.72757 * 25 24 23 28 28 H 0.97010 * 119.69712 * 180.25568 * 27 25 24 29 29 H 1.08999 * 109.47683 * 59.54183 * 1 2 3 30 30 H 1.09000 * 109.47010 * 179.54437 * 1 2 3 31 31 H 1.09006 * 109.47209 * 299.53842 * 1 2 3 32 32 H 1.08997 * 109.47214 * 240.00250 * 2 1 3 33 33 H 1.08996 * 109.47031 * 119.99596 * 2 1 3 34 34 H 1.08993 * 109.46762 * 48.25603 * 4 3 2 35 35 H 1.08994 * 109.47266 * 168.25897 * 4 3 2 36 36 H 0.96999 * 119.99521 * 359.97438 * 7 5 4 37 37 H 0.97002 * 120.00109 * 180.02562 * 11 10 8 38 38 H 1.09001 * 109.46533 * 306.04433 * 16 3 2 39 39 H 1.08997 * 109.47009 * 186.04068 * 16 3 2 40 40 H 1.07998 * 120.15631 * 0.02562 * 20 19 18 41 41 H 1.08004 * 119.58369 * 180.02562 * 21 20 19 42 42 H 1.08000 * 119.71244 * 180.02562 * 22 21 20 43 43 H 1.07993 * 120.23775 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3851 0.0000 4 6 1.6444 2.0761 -1.2409 5 6 2.4646 1.5363 -2.3840 6 8 3.3519 0.7375 -2.1699 7 7 2.2123 1.9413 -3.6446 8 6 2.9581 1.4499 -4.6847 9 1 3.7481 0.7385 -4.4939 10 6 2.6976 1.8670 -5.9843 11 7 1.7360 2.7320 -6.2164 12 14 3.7142 1.1979 -7.4014 13 1 4.7271 0.2463 -6.8780 14 1 2.8243 0.4962 -8.3611 15 1 4.3999 2.3198 -8.0916 16 6 1.5321 2.1158 1.1775 17 6 2.1372 1.5217 2.4233 18 7 2.9485 0.5162 2.2948 19 6 3.5304 -0.0702 3.3708 20 6 4.4027 -1.1520 3.2334 21 6 4.9702 -1.7166 4.3533 22 6 4.6859 -1.2241 5.6204 23 6 3.8292 -0.1574 5.7816 24 6 3.2438 0.4282 4.6609 25 6 2.3161 1.5637 4.7719 26 8 2.0271 2.0407 5.8539 27 7 1.8051 2.0651 3.6233 28 1 1.1927 2.8167 3.6576 29 1 -0.3634 0.5209 -0.8858 30 1 -0.3633 -1.0276 -0.0082 31 1 -0.3634 0.5067 0.8941 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5862 1.9107 -1.4431 35 1 1.8309 3.1445 -1.1325 36 1 1.5025 2.5798 -3.8159 37 1 1.5540 3.0229 -7.1237 38 1 0.4461 2.0389 1.2288 39 1 1.8190 3.1644 1.0988 40 1 4.6310 -1.5438 2.2532 41 1 5.6450 -2.5529 4.2452 42 1 5.1416 -1.6805 6.4868 43 1 3.6122 0.2214 6.7693 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076667843.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:55 Heat of formation + Delta-G solvation = 1.268436 kcal Electronic energy + Delta-G solvation = -27698.973073 eV Core-core repulsion = 23744.915961 eV Total energy + Delta-G solvation = -3954.057111 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.73569 -39.04635 -38.54880 -37.86439 -36.43399 -33.82559 -33.79246 -31.49714 -31.22170 -30.91231 -30.05414 -28.16524 -25.99906 -24.77530 -24.23428 -23.41069 -22.02075 -20.79571 -19.48571 -19.07516 -18.76432 -17.76626 -17.53300 -16.41489 -16.04449 -15.90547 -15.72454 -15.25592 -15.06388 -14.87256 -14.52020 -14.22537 -14.02168 -13.69896 -13.48831 -13.45546 -13.06303 -12.90343 -12.52864 -12.17710 -12.15791 -11.91830 -11.87130 -11.58678 -11.47700 -11.20719 -11.00899 -10.65782 -10.53539 -10.39801 -10.32584 -10.19986 -9.70288 -9.45145 -9.35155 -8.44214 -8.19920 -7.93366 -7.84162 -6.39332 -3.79538 0.33750 0.63155 2.02290 2.36402 2.58268 3.17879 3.28395 3.35555 3.68246 3.80263 3.81579 3.95406 4.13977 4.26465 4.48258 4.64738 4.74942 4.92788 4.99265 5.07810 5.14992 5.18925 5.26080 5.35318 5.39507 5.48417 5.60760 5.66896 5.73613 5.81435 5.84636 5.97532 6.12161 6.15305 6.20169 6.25518 6.30151 6.36684 6.57819 6.70608 7.20637 7.31290 7.49266 7.58035 7.83893 8.09843 8.65672 9.22009 9.58315 10.10919 10.78743 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.020387 B = 0.002601 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.078504 B =10760.946794 C =11585.550421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.046 3.954 3 N -0.486 5.486 4 C 0.039 3.961 5 C 0.447 3.553 6 O -0.569 6.569 7 N -0.569 5.569 8 C -0.295 4.295 9 H 0.103 0.897 10 C 0.021 3.979 11 N -0.904 5.904 12 Si 0.927 3.073 13 H -0.268 1.268 14 H -0.282 1.282 15 H -0.282 1.282 16 C 0.090 3.910 17 C 0.396 3.604 18 N -0.476 5.476 19 C 0.157 3.843 20 C -0.105 4.105 21 C -0.075 4.075 22 C -0.144 4.144 23 C -0.044 4.044 24 C -0.205 4.205 25 C 0.554 3.446 26 O -0.521 6.521 27 N -0.652 5.652 28 H 0.417 0.583 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.055 0.945 35 H 0.088 0.912 36 H 0.391 0.609 37 H 0.270 0.730 38 H 0.072 0.928 39 H 0.108 0.892 40 H 0.144 0.856 41 H 0.133 0.867 42 H 0.130 0.870 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.089 -3.176 19.987 20.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.081 4.081 3 N -0.209 5.209 4 C -0.092 4.092 5 C 0.232 3.768 6 O -0.451 6.451 7 N -0.206 5.206 8 C -0.424 4.424 9 H 0.121 0.879 10 C -0.180 4.180 11 N -0.546 5.546 12 Si 0.755 3.245 13 H -0.192 1.192 14 H -0.209 1.209 15 H -0.208 1.208 16 C -0.040 4.040 17 C 0.127 3.873 18 N -0.196 5.196 19 C 0.047 3.953 20 C -0.124 4.124 21 C -0.094 4.094 22 C -0.162 4.162 23 C -0.063 4.063 24 C -0.211 4.211 25 C 0.346 3.654 26 O -0.396 6.396 27 N -0.297 5.297 28 H 0.255 0.745 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.224 0.776 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.126 0.874 40 H 0.162 0.838 41 H 0.151 0.849 42 H 0.148 0.852 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.743 -3.975 19.996 20.401 hybrid contribution -1.355 0.909 -0.207 1.644 sum -2.098 -3.066 19.789 20.134 Atomic orbital electron populations 1.22528 0.99688 1.02301 1.01066 1.22428 0.90783 0.89455 1.05444 1.61545 1.58688 1.01996 0.98625 1.21975 0.98184 0.98856 0.90193 1.19662 0.87421 0.86322 0.83408 1.90545 1.34036 1.36756 1.83812 1.41868 1.33042 1.40839 1.04871 1.19731 1.14335 1.23520 0.84834 0.87897 1.25230 0.97263 0.96813 0.98734 1.69614 1.30781 1.32233 1.21967 0.85831 0.79485 0.78653 0.80565 1.19219 1.20853 1.20834 1.21181 0.97439 0.98555 0.86856 1.22924 0.89646 0.88741 0.85962 1.68846 1.11758 1.10210 1.28775 1.19028 0.94495 0.94509 0.87219 1.20988 0.96391 0.94960 1.00100 1.21327 0.97445 0.98614 0.92011 1.21164 0.99742 0.97549 0.97767 1.20966 0.93659 0.93943 0.97766 1.20574 1.04358 1.00357 0.95795 1.18383 0.80533 0.83359 0.83094 1.90891 1.61019 1.61467 1.26208 1.44441 1.44533 1.33881 1.06824 0.74489 0.92284 0.92128 0.93519 0.88959 0.88741 0.92736 0.89390 0.77629 0.92031 0.91060 0.87425 0.83797 0.84892 0.85165 0.84774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.40 9.26 37.16 0.34 -2.05 16 2 C 0.05 0.70 5.37 -3.82 -0.02 0.68 16 3 N -0.49 -7.26 3.97 -237.53 -0.94 -8.20 16 4 C 0.04 0.62 5.34 -4.98 -0.03 0.60 16 5 C 0.45 10.04 7.36 -10.99 -0.08 9.96 16 6 O -0.57 -14.92 14.70 5.54 0.08 -14.84 16 7 N -0.57 -13.90 5.29 -10.96 -0.06 -13.96 16 8 C -0.29 -8.04 9.68 -14.94 -0.14 -8.19 16 9 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 10 C 0.02 0.55 5.50 -17.47 -0.10 0.45 16 11 N -0.90 -24.24 13.05 55.50 0.72 -23.52 16 12 Si 0.93 20.85 29.55 -169.99 -5.02 15.83 16 13 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 14 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 C 0.09 0.94 5.11 -4.98 -0.03 0.91 16 17 C 0.40 4.56 7.38 -155.21 -1.15 3.42 16 18 N -0.48 -6.59 7.05 -8.19 -0.06 -6.65 16 19 C 0.16 2.06 6.63 -84.51 -0.56 1.50 16 20 C -0.11 -1.21 10.03 -39.27 -0.39 -1.60 16 21 C -0.07 -0.67 10.00 -39.55 -0.40 -1.06 16 22 C -0.14 -1.25 10.02 -39.51 -0.40 -1.65 16 23 C -0.04 -0.47 9.68 -39.35 -0.38 -0.85 16 24 C -0.21 -2.59 5.89 -104.78 -0.62 -3.21 16 25 C 0.55 7.06 7.99 -12.43 -0.10 6.96 16 26 O -0.52 -7.71 17.48 5.16 0.09 -7.62 16 27 N -0.65 -6.57 5.27 -10.46 -0.06 -6.62 16 28 H 0.42 2.90 8.75 -40.82 -0.36 2.54 16 29 H 0.06 0.75 6.28 -51.93 -0.33 0.42 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.48 6.29 -51.93 -0.33 0.15 16 32 H 0.09 1.73 6.54 -51.93 -0.34 1.39 16 33 H 0.09 1.41 5.65 -51.93 -0.29 1.12 16 34 H 0.05 0.78 5.96 -51.93 -0.31 0.47 16 35 H 0.09 1.22 7.81 -51.93 -0.41 0.82 16 36 H 0.39 9.11 7.90 -40.82 -0.32 8.79 16 37 H 0.27 6.85 8.31 -40.82 -0.34 6.52 16 38 H 0.07 0.58 5.98 -51.93 -0.31 0.27 16 39 H 0.11 0.90 7.86 -51.93 -0.41 0.49 16 40 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 42 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 43 H 0.13 1.31 7.83 -52.49 -0.41 0.90 16 LS Contribution 357.55 15.07 5.39 5.39 Total: -1.00 -34.08 357.55 -8.90 -42.98 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -5.01 Total: 11.34 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: -4.04 Total: 5.88 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -0.39 Total: -58.95 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: 0.17 Total: -22.46 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.08 -8.90 -42.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076667843.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.249 kcal (2) G-P(sol) polarization free energy of solvation -34.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds