Wall clock time and date at job start Tue Mar 31 2020 05:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47454 * 2 1 4 4 H 1.08997 * 109.47240 * 54.99975 * 3 2 1 5 5 C 1.50700 * 109.47266 * 175.00425 * 3 2 1 6 6 H 1.07999 * 120.00255 * 119.99902 * 5 3 2 7 7 C 1.37878 * 119.99944 * 299.99657 * 5 3 2 8 8 N 1.31521 * 119.99721 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00153 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47298 * 60.00231 * 9 7 5 11 11 H 1.48502 * 109.47385 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47108 * 300.00202 * 9 7 5 13 13 N 1.46510 * 109.46884 * 295.00093 * 3 2 1 14 14 C 1.34775 * 119.99763 * 85.00282 * 13 3 2 15 15 O 1.21583 * 120.00113 * 359.97438 * 14 13 3 16 16 N 1.34774 * 120.00038 * 179.97438 * 14 13 3 17 17 C 1.39747 * 120.00197 * 185.31294 * 16 14 13 18 18 C 1.39032 * 119.92133 * 33.41860 * 17 16 14 19 19 C 1.37781 * 120.06666 * 179.97438 * 18 17 16 20 20 C 1.39646 * 119.93007 * 0.02562 * 19 18 17 21 21 C 1.47747 * 120.07016 * 180.02562 * 20 19 18 22 22 N 1.31278 * 126.39109 * 359.68462 * 21 20 19 23 23 N 1.28672 * 109.24852 * 179.82586 * 22 21 20 24 24 C 1.30345 * 109.54128 * 0.44812 * 23 22 21 25 25 C 1.50694 * 126.18173 * 179.69038 * 24 23 22 26 26 O 1.34463 * 107.63170 * 359.72850 * 24 23 22 27 27 C 1.39641 * 119.85135 * 359.97438 * 20 19 18 28 28 C 1.37783 * 119.92823 * 0.02562 * 27 20 19 29 29 H 1.09003 * 109.46678 * 299.99976 * 1 2 3 30 30 H 1.08997 * 109.47317 * 59.99624 * 1 2 3 31 31 H 1.08998 * 109.47187 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46678 * 240.00024 * 2 1 3 33 33 H 1.08997 * 109.47317 * 120.00376 * 2 1 3 34 34 H 0.96999 * 119.99452 * 179.97438 * 8 7 5 35 35 H 0.96996 * 119.99656 * 264.99601 * 13 3 2 36 36 H 0.97006 * 119.99924 * 5.31759 * 16 14 13 37 37 H 1.07991 * 119.96685 * 0.24689 * 18 17 16 38 38 H 1.08001 * 120.03058 * 179.97438 * 19 18 17 39 39 H 1.09001 * 109.47217 * 270.03992 * 25 24 23 40 40 H 1.09001 * 109.47290 * 30.04485 * 25 24 23 41 41 H 1.09003 * 109.46821 * 150.04497 * 25 24 23 42 42 H 1.08000 * 120.03674 * 179.97438 * 27 20 19 43 43 H 1.07998 * 119.96031 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4442 0.1237 6 1 4.1472 1.8887 -0.6524 7 6 4.1434 0.8783 1.2279 8 7 3.4063 0.3365 2.1728 9 14 6.0050 0.8810 1.3816 10 1 6.4996 2.2812 1.3820 11 1 6.3980 0.2165 2.6502 12 1 6.5975 0.1471 0.2347 13 7 1.6524 2.0974 -1.2519 14 6 0.4352 2.6644 -1.3670 15 8 -0.3414 2.6319 -0.4320 16 7 0.0788 3.2674 -2.5184 17 6 -1.1372 3.9510 -2.6019 18 6 -1.6390 4.6123 -1.4866 19 6 -2.8373 5.2877 -1.5657 20 6 -3.5482 5.3071 -2.7675 21 6 -4.8332 6.0309 -2.8560 22 7 -5.4240 6.6904 -1.8867 23 7 -6.5226 7.1960 -2.3259 24 6 -6.6803 6.8744 -3.5792 25 6 -7.8410 7.2631 -4.4582 26 8 -5.6206 6.1323 -3.9456 27 6 -3.0412 4.6419 -3.8857 28 6 -1.8423 3.9683 -3.7999 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8294 -0.0619 2.9494 35 1 2.2719 2.1230 -1.9978 36 1 0.6663 3.2268 -3.2892 37 1 -1.0869 4.6003 -0.5586 38 1 -3.2268 5.8009 -0.6989 39 1 -8.6202 6.5042 -4.3878 40 1 -8.2388 8.2238 -4.1311 41 1 -7.5034 7.3425 -5.4916 42 1 -3.5887 4.6546 -4.8166 43 1 -1.4496 3.4540 -4.6645 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097163307.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:45 Heat of formation + Delta-G solvation = 35.065808 kcal Electronic energy + Delta-G solvation = -26914.575242 eV Core-core repulsion = 22961.983694 eV Total energy + Delta-G solvation = -3952.591547 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.29376 -40.43269 -38.69729 -36.34173 -35.69492 -34.51556 -33.22196 -32.45773 -31.19137 -31.09445 -30.07102 -27.82472 -26.85310 -24.33556 -23.54384 -23.05180 -22.27806 -21.88725 -20.65818 -19.60332 -18.34142 -17.98168 -17.61083 -17.43107 -16.40588 -16.06529 -15.56235 -15.13073 -14.91614 -14.48885 -14.31273 -14.09023 -13.79146 -13.63636 -13.33536 -13.31365 -13.11332 -12.72735 -12.61226 -12.55639 -12.26024 -12.03034 -11.64246 -11.46568 -11.29761 -11.09256 -11.03622 -10.89249 -10.66714 -10.37935 -10.23906 -9.76394 -9.57426 -9.51413 -9.12745 -9.06096 -8.56143 -8.10428 -7.80861 -6.17530 -4.27452 0.33445 1.28073 1.47304 1.97181 2.31918 2.99690 3.22060 3.28199 3.29362 3.49669 3.56633 3.88936 4.11326 4.27383 4.53529 4.75052 4.77239 4.84071 4.86762 4.99421 5.14097 5.15657 5.17140 5.20722 5.41669 5.48830 5.51203 5.88111 6.05144 6.21788 6.30090 6.36164 6.42863 6.46551 6.61621 6.91682 6.94228 7.05592 7.26282 7.29667 7.36786 7.58519 7.78878 7.88663 8.10531 8.12488 8.63414 8.75060 9.11667 9.40246 10.87685 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.032661 B = 0.002045 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.095648 B =13686.424785 C =13765.874447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.286 3.714 4 H 0.051 0.949 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.880 5.880 9 Si 0.903 3.097 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.715 5.715 14 C 0.690 3.310 15 O -0.570 6.570 16 N -0.696 5.696 17 C 0.219 3.781 18 C -0.125 4.125 19 C -0.039 4.039 20 C -0.069 4.069 21 C 0.228 3.772 22 N -0.285 5.285 23 N -0.285 5.285 24 C 0.150 3.850 25 C -0.056 4.056 26 O -0.224 6.224 27 C -0.058 4.058 28 C -0.162 4.162 29 H 0.050 0.950 30 H 0.037 0.963 31 H 0.022 0.978 32 H 0.030 0.970 33 H 0.100 0.900 34 H 0.266 0.734 35 H 0.387 0.613 36 H 0.405 0.595 37 H 0.152 0.848 38 H 0.141 0.859 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.092 0.908 42 H 0.131 0.869 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.635 9.648 -16.753 24.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.184 3.816 4 H 0.069 0.931 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.366 5.366 14 C 0.391 3.609 15 O -0.447 6.447 16 N -0.343 5.343 17 C 0.120 3.880 18 C -0.146 4.146 19 C -0.059 4.059 20 C -0.072 4.072 21 C 0.021 3.979 22 N -0.132 5.132 23 N -0.132 5.132 24 C -0.060 4.060 25 C -0.113 4.113 26 O -0.105 6.105 27 C -0.078 4.078 28 C -0.184 4.184 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.041 0.959 32 H 0.049 0.951 33 H 0.118 0.882 34 H 0.076 0.924 35 H 0.219 0.781 36 H 0.240 0.760 37 H 0.170 0.830 38 H 0.158 0.842 39 H 0.116 0.884 40 H 0.124 0.876 41 H 0.110 0.890 42 H 0.149 0.851 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.454 9.965 -14.429 23.374 hybrid contribution 1.761 -0.665 -1.830 2.626 sum -13.693 9.300 -16.259 23.202 Atomic orbital electron populations 1.21819 0.98228 0.98006 1.01264 1.21967 0.92700 0.99820 1.02319 1.18760 0.94097 0.88933 0.79764 0.93086 1.21158 0.90535 1.39393 1.06413 0.92123 1.24877 0.98663 0.94742 0.95343 1.69884 1.35272 1.37276 1.09322 0.86494 0.84711 0.78321 0.77481 1.20175 1.21099 1.20195 1.45884 1.12821 1.58483 1.19401 1.16133 0.83758 0.78845 0.82179 1.90932 1.51565 1.64169 1.38017 1.43011 1.20023 1.55759 1.15479 1.17798 0.85802 0.90141 0.94278 1.21262 0.96928 0.96541 0.99875 1.21043 0.93025 0.95969 0.95885 1.17116 0.89664 1.03959 0.96465 1.25560 0.94254 0.98066 0.79999 1.74769 1.02312 1.11388 1.24717 1.74362 1.11345 1.19739 1.07791 1.27965 0.90755 0.93424 0.93884 1.20327 0.89982 1.03845 0.97180 1.84824 1.29018 1.57193 1.39446 1.20877 0.94998 0.94846 0.97121 1.20735 0.95497 1.04140 0.97982 0.93069 0.94380 0.95929 0.95070 0.88173 0.92408 0.78122 0.75958 0.83042 0.84168 0.88388 0.87583 0.88966 0.85112 0.84843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.51 37.16 0.32 -2.65 16 2 C -0.13 -3.03 5.45 -26.74 -0.15 -3.17 16 3 C 0.29 6.83 2.24 -69.08 -0.15 6.68 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 5 C -0.54 -13.54 8.73 -34.44 -0.30 -13.84 16 6 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -23.97 11.29 55.43 0.63 -23.35 16 9 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 13 N -0.72 -13.62 5.03 -59.81 -0.30 -13.93 16 14 C 0.69 12.60 6.86 -86.92 -0.60 12.00 16 15 O -0.57 -12.37 11.16 5.29 0.06 -12.32 16 16 N -0.70 -9.37 5.34 -14.20 -0.08 -9.45 16 17 C 0.22 2.90 6.28 -83.66 -0.53 2.37 16 18 C -0.13 -1.83 8.62 -39.45 -0.34 -2.17 16 19 C -0.04 -0.52 9.69 -39.22 -0.38 -0.90 16 20 C -0.07 -0.86 5.87 -104.96 -0.62 -1.48 16 21 C 0.23 3.01 7.98 -13.90 -0.11 2.90 16 22 N -0.29 -4.24 11.91 32.06 0.38 -3.86 16 23 N -0.28 -3.86 12.22 32.58 0.40 -3.46 16 24 C 0.15 1.53 8.47 -12.91 -0.11 1.42 16 25 C -0.06 -0.24 10.51 36.00 0.38 0.14 16 26 O -0.22 -2.57 10.67 3.84 0.04 -2.53 16 27 C -0.06 -0.61 9.72 -39.22 -0.38 -0.99 16 28 C -0.16 -1.70 9.94 -39.46 -0.39 -2.10 16 29 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 30 H 0.04 0.81 5.64 -51.93 -0.29 0.52 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 34 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.39 6.23 8.56 -40.82 -0.35 5.88 16 36 H 0.41 4.00 8.83 -40.82 -0.36 3.64 16 37 H 0.15 2.52 6.41 -52.49 -0.34 2.18 16 38 H 0.14 1.80 7.86 -52.49 -0.41 1.39 16 39 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.13 1.08 7.93 -52.49 -0.42 0.66 16 43 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 364.06 15.07 5.49 5.49 Total: -1.00 -32.06 364.06 -7.21 -39.27 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -5.36 Total: 9.24 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -3.45 Total: -0.12 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 1.03 Total: -54.04 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: 0.10 Total: -14.84 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.06 -7.21 -39.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097163307.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.335 kcal (2) G-P(sol) polarization free energy of solvation -32.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds