Wall clock time and date at job start Tue Mar 31 2020 05:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47561 * 2 1 4 4 H 1.09003 * 109.46640 * 304.99935 * 3 2 1 5 5 C 1.50705 * 109.47083 * 185.00305 * 3 2 1 6 6 H 1.08000 * 119.99441 * 239.99531 * 5 3 2 7 7 C 1.37875 * 119.99931 * 59.99637 * 5 3 2 8 8 N 1.31514 * 120.00384 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99544 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.46923 * 60.00307 * 9 7 5 11 11 H 1.48495 * 109.46824 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47503 * 300.00054 * 9 7 5 13 13 N 1.46495 * 109.47130 * 64.99928 * 3 2 1 14 14 C 1.34778 * 119.99863 * 274.99704 * 13 3 2 15 15 O 1.21580 * 120.00075 * 0.02562 * 14 13 3 16 16 N 1.34778 * 119.99853 * 179.97438 * 14 13 3 17 17 C 1.39748 * 120.00019 * 174.68893 * 16 14 13 18 18 C 1.39031 * 119.92327 * 326.39496 * 17 16 14 19 19 C 1.37783 * 120.06606 * 179.72644 * 18 17 16 20 20 C 1.39642 * 119.93092 * 0.52189 * 19 18 17 21 21 C 1.47755 * 120.07523 * 179.72564 * 20 19 18 22 22 N 1.31281 * 126.38572 * 179.71231 * 21 20 19 23 23 N 1.28667 * 109.24600 * 179.83039 * 22 21 20 24 24 C 1.30342 * 109.54047 * 0.44245 * 23 22 21 25 25 C 1.50700 * 126.18175 * 179.69265 * 24 23 22 26 26 O 1.34461 * 107.63658 * 359.73481 * 24 23 22 27 27 C 1.39643 * 119.85094 * 359.75221 * 20 19 18 28 28 C 1.37785 * 119.92933 * 359.97438 * 27 20 19 29 29 H 1.09004 * 109.47078 * 60.00038 * 1 2 3 30 30 H 1.09001 * 109.47543 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46890 * 300.00500 * 1 2 3 32 32 H 1.09003 * 109.46890 * 239.99500 * 2 1 3 33 33 H 1.09004 * 109.47078 * 119.99962 * 2 1 3 34 34 H 0.97003 * 119.99874 * 179.97438 * 8 7 5 35 35 H 0.96993 * 120.00309 * 95.00603 * 13 3 2 36 36 H 0.97001 * 120.00126 * 354.68878 * 16 14 13 37 37 H 1.07995 * 119.96494 * 359.97438 * 18 17 16 38 38 H 1.08000 * 120.03190 * 180.29630 * 19 18 17 39 39 H 1.08993 * 109.47211 * 270.04553 * 25 24 23 40 40 H 1.09000 * 109.47027 * 30.05174 * 25 24 23 41 41 H 1.09010 * 109.46944 * 150.04417 * 25 24 23 42 42 H 1.08000 * 120.03340 * 180.02562 * 27 20 19 43 43 H 1.07990 * 119.96568 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9814 -0.8419 5 6 3.5420 1.4441 -0.1239 6 1 4.1473 1.8887 0.6522 7 6 4.1433 0.8781 -1.2280 8 7 3.4061 0.3372 -2.1734 9 14 6.0050 0.8809 -1.3819 10 1 6.5974 0.1469 -0.2350 11 1 6.3977 0.2162 -2.6504 12 1 6.4996 2.2810 -1.3823 13 7 1.6526 2.0974 1.2518 14 6 0.4353 2.6645 1.3668 15 8 -0.3413 2.6320 0.4320 16 7 0.0786 3.2666 2.5186 17 6 -1.1374 3.9503 2.6023 18 6 -1.6369 4.6158 1.4884 19 6 -2.8381 5.2861 1.5660 20 6 -3.5487 5.3057 2.7680 21 6 -4.8343 6.0286 2.8564 22 7 -5.6034 6.1230 3.9161 23 7 -6.6386 6.8304 3.6272 24 6 -6.5768 7.2045 2.3801 25 6 -7.5967 8.0401 1.6504 26 8 -5.4391 6.7093 1.8622 27 6 -3.0413 4.6411 3.8863 28 6 -1.8422 3.9679 3.8005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8292 -0.0607 -2.9503 35 1 2.2720 2.1231 1.9977 36 1 0.6658 3.2254 3.2896 37 1 -1.0846 4.6039 0.5604 38 1 -3.2280 5.7988 0.6991 39 1 -8.3416 7.3881 1.1944 40 1 -8.0856 8.7136 2.3545 41 1 -7.1006 8.6234 0.8746 42 1 -3.5886 4.6540 4.8173 43 1 -1.4494 3.4533 4.6649 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097163308.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:47 Heat of formation + Delta-G solvation = 34.487133 kcal Electronic energy + Delta-G solvation = -26935.080305 eV Core-core repulsion = 22982.463664 eV Total energy + Delta-G solvation = -3952.616641 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.29163 -40.43772 -38.70199 -36.33797 -35.70348 -34.52044 -33.21963 -32.46523 -31.17115 -31.11975 -30.08283 -27.80413 -26.85542 -24.43383 -23.37158 -23.10438 -22.32313 -21.89969 -20.64230 -19.61540 -18.31751 -17.99531 -17.60105 -17.47065 -16.37143 -16.08852 -15.52121 -15.15302 -14.92926 -14.49331 -14.31063 -14.09679 -13.77054 -13.63471 -13.32822 -13.29752 -13.11502 -12.74050 -12.61709 -12.56432 -12.27230 -12.04634 -11.65263 -11.44652 -11.31090 -11.13423 -11.04527 -10.90366 -10.66859 -10.39006 -10.25046 -9.77421 -9.58240 -9.51266 -9.13954 -9.07087 -8.57434 -8.11051 -7.81455 -6.18881 -4.28779 0.33526 1.28094 1.48015 1.98962 2.30551 2.99376 3.21082 3.27132 3.28418 3.48811 3.57358 3.88197 4.12337 4.26199 4.53810 4.72981 4.82643 4.86658 4.87919 5.01657 5.12441 5.12876 5.18719 5.21492 5.42715 5.48075 5.52587 5.89849 6.06083 6.21253 6.27744 6.35087 6.41677 6.44642 6.60378 6.90760 6.93499 7.04851 7.25118 7.28409 7.35437 7.57316 7.77617 7.87492 8.09333 8.11185 8.62300 8.73835 9.10472 9.38996 10.86328 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.027915 B = 0.002093 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.813512 B =13374.531770 C =13585.732689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.286 3.714 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.715 5.715 14 C 0.691 3.309 15 O -0.571 6.571 16 N -0.696 5.696 17 C 0.219 3.781 18 C -0.126 4.126 19 C -0.057 4.057 20 C -0.069 4.069 21 C 0.229 3.771 22 N -0.289 5.289 23 N -0.287 5.287 24 C 0.152 3.848 25 C -0.056 4.056 26 O -0.222 6.222 27 C -0.040 4.040 28 C -0.162 4.162 29 H 0.050 0.950 30 H 0.022 0.978 31 H 0.037 0.963 32 H 0.100 0.900 33 H 0.031 0.969 34 H 0.266 0.734 35 H 0.387 0.613 36 H 0.406 0.594 37 H 0.150 0.850 38 H 0.132 0.868 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.092 0.908 42 H 0.140 0.860 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.011 11.634 9.648 20.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.185 3.815 4 H 0.069 0.931 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.366 5.366 14 C 0.391 3.609 15 O -0.448 6.448 16 N -0.343 5.343 17 C 0.120 3.880 18 C -0.147 4.147 19 C -0.077 4.077 20 C -0.073 4.073 21 C 0.022 3.978 22 N -0.136 5.136 23 N -0.134 5.134 24 C -0.058 4.058 25 C -0.114 4.114 26 O -0.102 6.102 27 C -0.060 4.060 28 C -0.183 4.183 29 H 0.069 0.931 30 H 0.041 0.959 31 H 0.056 0.944 32 H 0.118 0.882 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.219 0.781 36 H 0.241 0.759 37 H 0.168 0.832 38 H 0.150 0.850 39 H 0.117 0.883 40 H 0.124 0.876 41 H 0.111 0.889 42 H 0.158 0.842 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -15.038 11.288 9.708 21.162 hybrid contribution 1.970 -0.008 -0.555 2.047 sum -13.068 11.280 9.153 19.540 Atomic orbital electron populations 1.21819 0.98233 0.98017 1.01237 1.21969 0.92697 0.99818 1.02334 1.18755 0.94096 0.88932 0.79756 0.93131 1.21161 0.90538 1.39374 1.06419 0.92109 1.24875 0.98670 0.94731 0.95343 1.69880 1.35283 1.37333 1.09291 0.86494 0.84705 0.78323 0.77496 1.20167 1.21105 1.20176 1.45881 1.12840 1.58456 1.19407 1.16129 0.83741 0.78825 0.82177 1.90923 1.51596 1.64230 1.38081 1.43010 1.20041 1.55771 1.15440 1.17798 0.85808 0.90089 0.94298 1.21216 0.96938 0.96656 0.99863 1.21080 0.93799 0.96924 0.95918 1.17115 0.89693 1.03998 0.96451 1.25547 0.96251 0.94344 0.81666 1.74725 1.00090 1.15538 1.23200 1.74335 1.16229 1.11110 1.11750 1.27970 0.87469 0.99233 0.91145 1.20339 0.93338 0.97576 1.00169 1.84849 1.30991 1.53469 1.40896 1.20834 0.94389 0.93536 0.97253 1.20784 0.95444 1.04104 0.97982 0.93111 0.95914 0.94367 0.88185 0.95038 0.92409 0.78094 0.75908 0.83242 0.85039 0.88342 0.87594 0.88877 0.84238 0.84628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.51 37.16 0.32 -2.63 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.16 16 3 C 0.29 6.80 2.24 -69.09 -0.15 6.65 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.54 -13.48 8.73 -34.44 -0.30 -13.78 16 6 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -23.86 11.29 55.43 0.63 -23.23 16 9 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16 10 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 13 N -0.72 -13.57 5.03 -59.82 -0.30 -13.87 16 14 C 0.69 12.54 6.86 -86.92 -0.60 11.94 16 15 O -0.57 -12.29 11.17 5.30 0.06 -12.23 16 16 N -0.70 -9.36 5.34 -14.19 -0.08 -9.44 16 17 C 0.22 2.90 6.28 -83.66 -0.52 2.38 16 18 C -0.13 -1.79 8.63 -39.45 -0.34 -2.13 16 19 C -0.06 -0.72 9.72 -39.22 -0.38 -1.10 16 20 C -0.07 -0.87 5.87 -104.96 -0.62 -1.48 16 21 C 0.23 3.02 7.98 -13.90 -0.11 2.91 16 22 N -0.29 -4.12 11.91 32.06 0.38 -3.73 16 23 N -0.29 -3.81 12.22 32.58 0.40 -3.41 16 24 C 0.15 1.59 8.47 -12.91 -0.11 1.48 16 25 C -0.06 -0.27 10.51 36.01 0.38 0.11 16 26 O -0.22 -2.68 10.67 3.86 0.04 -2.64 16 27 C -0.04 -0.45 9.69 -39.22 -0.38 -0.83 16 28 C -0.16 -1.75 9.94 -39.45 -0.39 -2.15 16 29 H 0.05 1.18 7.84 -51.93 -0.41 0.77 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.04 0.81 5.64 -51.93 -0.29 0.52 16 32 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.39 6.22 8.56 -40.82 -0.35 5.87 16 36 H 0.41 4.02 8.83 -40.82 -0.36 3.66 16 37 H 0.15 2.42 6.42 -52.49 -0.34 2.09 16 38 H 0.13 1.46 7.93 -52.49 -0.42 1.05 16 39 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.09 0.29 8.14 -51.92 -0.42 -0.13 16 42 H 0.14 1.39 7.86 -52.49 -0.41 0.98 16 43 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 364.08 15.07 5.49 5.49 Total: -1.00 -31.75 364.08 -7.21 -38.96 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -5.36 Total: 9.33 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -3.45 Total: -0.15 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: 1.03 Total: -53.68 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: 0.10 Total: -14.87 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.75 -7.21 -38.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097163308.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.449 kcal (2) G-P(sol) polarization free energy of solvation -31.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds