Wall clock time and date at job start Tue Mar 31 2020 06:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00096 * 2 1 4 4 H 1.48503 * 109.47098 * 240.00188 * 3 2 1 5 5 H 1.48500 * 109.46872 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47626 * 119.99791 * 3 2 1 7 7 C 1.37874 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00132 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00130 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47443 * 179.97438 * 9 7 2 11 11 N 1.40066 * 125.87243 * 270.00514 * 10 9 7 12 12 C 1.30244 * 109.69256 * 179.97438 * 11 10 9 13 13 C 1.41172 * 108.47384 * 359.76723 * 12 11 10 14 14 C 1.36317 * 125.87495 * 89.99720 * 10 9 7 15 15 N 1.33200 * 134.61576 * 0.02562 * 14 10 9 16 16 C 1.31503 * 120.68498 * 180.02562 * 15 14 10 17 17 N 1.32122 * 122.64223 * 359.97438 * 16 15 14 18 18 C 1.32863 * 121.19963 * 0.02562 * 17 16 15 19 19 N 1.38104 * 120.81737 * 179.97438 * 18 17 16 20 20 C 1.46506 * 119.99745 * 0.02562 * 19 18 17 21 21 C 1.50699 * 109.46928 * 179.97438 * 20 19 18 22 22 O 1.21282 * 120.00041 * 359.97438 * 21 20 19 23 23 N 1.34779 * 120.00037 * 179.97438 * 21 20 19 24 24 C 1.47021 * 125.64775 * 359.69699 * 23 21 20 25 25 C 1.54312 * 107.27753 * 180.96393 * 24 23 21 26 26 C 1.55158 * 102.86064 * 22.52455 * 25 24 23 27 27 C 1.47419 * 125.64900 * 179.97438 * 23 21 20 28 28 H 0.97001 * 119.99838 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46523 * 59.99735 * 9 7 2 30 30 H 1.08997 * 109.46946 * 299.99908 * 9 7 2 31 31 H 1.08006 * 125.76252 * 179.97438 * 12 11 10 32 32 H 1.07999 * 118.67821 * 179.97438 * 16 15 14 33 33 H 0.96999 * 120.00175 * 180.02562 * 19 18 17 34 34 H 1.09004 * 109.47073 * 299.99481 * 20 19 18 35 35 H 1.09000 * 109.47212 * 59.99563 * 20 19 18 36 36 H 1.08998 * 109.87938 * 300.51100 * 24 23 21 37 37 H 1.08997 * 109.88206 * 61.67078 * 24 23 21 38 38 H 1.08990 * 110.92503 * 264.11069 * 25 24 23 39 39 H 1.08998 * 110.59088 * 140.77927 * 25 24 23 40 40 H 1.09002 * 111.00709 * 206.22693 * 26 25 24 41 41 H 1.09001 * 111.00706 * 82.37850 * 26 25 24 42 42 H 1.09004 * 110.36902 * 274.67955 * 27 23 21 43 43 H 1.09001 * 110.37077 * 36.88726 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 7 2.7364 -4.2365 -1.1345 12 6 3.5497 -5.1869 -0.7715 13 6 3.5907 -5.2261 0.6390 14 6 2.7222 -4.2198 1.1051 15 7 2.5789 -4.0528 2.4188 16 6 3.2322 -4.8159 3.2675 17 7 4.0529 -5.7750 2.8776 18 6 4.2626 -6.0197 1.5887 19 7 5.1227 -7.0239 1.1899 20 6 5.8166 -7.8353 2.1932 21 6 6.6872 -8.8526 1.5018 22 8 6.7241 -8.8960 0.2903 23 7 7.4249 -9.7143 2.2298 24 6 7.4792 -9.7677 3.6980 25 6 8.4683 -10.8889 4.0796 26 6 9.3491 -11.0197 2.8089 27 6 8.3154 -10.7556 1.6856 28 1 -0.4850 0.8401 0.0004 29 1 0.6248 -2.5570 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 4.1021 -5.8334 -1.4373 32 1 3.0921 -4.6519 4.3258 33 1 5.2674 -7.1921 0.2456 34 1 6.4358 -7.1905 2.8169 35 1 5.0836 -8.3481 2.8160 36 1 7.8287 -8.8129 4.0909 37 1 6.4911 -9.9958 4.0974 38 1 7.9410 -11.8213 4.2808 39 1 9.0713 -10.5926 4.9379 40 1 9.7687 -12.0223 2.7258 41 1 10.1369 -10.2663 2.8003 42 1 7.7506 -11.6623 1.4687 43 1 8.8142 -10.3959 0.7856 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200210.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:50 Heat of formation + Delta-G solvation = 87.813120 kcal Electronic energy + Delta-G solvation = -26963.427358 eV Core-core repulsion = 23045.415857 eV Total energy + Delta-G solvation = -3918.011501 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.37876 -40.49860 -38.49464 -37.89499 -35.94783 -33.71223 -32.54273 -32.04801 -31.26535 -30.16453 -29.48356 -27.55419 -26.85776 -23.99683 -23.91800 -23.17764 -22.18915 -21.68474 -20.13568 -19.81845 -18.24975 -17.48417 -17.15922 -17.01992 -16.65323 -16.28087 -15.83992 -15.54185 -14.95851 -14.64412 -14.36111 -14.15130 -14.04177 -13.85543 -13.70532 -13.58405 -13.28347 -13.08168 -12.85120 -12.65450 -12.11832 -11.90907 -11.77516 -11.63092 -11.33495 -11.22388 -11.00334 -10.95590 -10.73092 -10.33523 -10.26221 -10.07053 -9.83329 -9.27847 -9.15488 -8.69273 -8.56852 -8.20559 -7.63510 -6.19191 -4.25586 1.31774 1.94262 2.16776 2.32076 2.99322 3.08473 3.18747 3.28572 3.31274 3.36590 3.85713 4.00633 4.31123 4.33062 4.35251 4.40720 4.57941 4.70289 4.77635 4.81243 4.97132 5.06351 5.08534 5.14974 5.16792 5.18422 5.18652 5.30298 5.32161 5.41596 5.56909 5.59303 5.74394 5.77816 6.30055 6.69239 6.84730 7.02020 7.06042 7.13720 7.23021 7.52131 7.64989 7.74759 7.92615 7.94684 8.25945 8.73666 8.83360 9.39167 10.88987 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.026110 B = 0.002211 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.147024 B =12662.417811 C =12910.780610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.066 3.934 3 Si 0.908 3.092 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.533 4.533 8 H 0.061 0.939 9 C 0.264 3.736 10 N -0.332 5.332 11 N -0.243 5.243 12 C 0.071 3.929 13 C -0.334 4.334 14 C 0.363 3.637 15 N -0.552 5.552 16 C 0.367 3.633 17 N -0.622 5.622 18 C 0.512 3.488 19 N -0.697 5.697 20 C 0.120 3.880 21 C 0.524 3.476 22 O -0.535 6.535 23 N -0.619 5.619 24 C 0.094 3.906 25 C -0.132 4.132 26 C -0.135 4.135 27 C 0.104 3.896 28 H 0.268 0.732 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.184 0.816 32 H 0.196 0.804 33 H 0.420 0.580 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.883 -23.729 9.833 30.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.572 4.572 8 H 0.079 0.921 9 C 0.147 3.853 10 N -0.118 5.118 11 N -0.058 5.058 12 C -0.124 4.124 13 C -0.352 4.352 14 C 0.115 3.885 15 N -0.277 5.277 16 C 0.073 3.927 17 N -0.353 5.353 18 C 0.259 3.741 19 N -0.334 5.334 20 C -0.008 4.008 21 C 0.313 3.687 22 O -0.412 6.412 23 N -0.354 5.354 24 C -0.029 4.029 25 C -0.170 4.170 26 C -0.173 4.173 27 C -0.018 4.018 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.201 0.799 32 H 0.212 0.788 33 H 0.260 0.740 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 15.862 -22.634 9.093 29.096 hybrid contribution 0.967 0.351 -0.404 1.105 sum 16.829 -22.283 8.689 29.244 Atomic orbital electron populations 1.69910 1.05990 1.27711 1.49319 1.24897 0.94991 0.99346 0.94472 0.86398 0.79429 0.81866 0.78864 1.20031 1.20907 1.19971 1.21209 0.93517 0.89684 1.52770 0.92104 1.19793 0.85690 0.79827 1.00007 1.49474 1.35799 1.27718 0.98797 1.76960 1.11553 1.08064 1.09256 1.23435 0.98849 0.97756 0.92402 1.19571 1.12448 1.07813 0.95374 1.18931 0.91063 0.89957 0.88524 1.67511 1.29538 1.30689 0.99976 1.24391 0.85169 0.84001 0.99183 1.67923 1.27008 1.26027 1.14367 1.17807 0.84058 0.83832 0.88364 1.43982 1.45961 1.33985 1.09508 1.20932 0.95857 0.92554 0.91430 1.20380 0.79914 0.81173 0.87267 1.90723 1.65475 1.71297 1.13681 1.48415 1.45082 1.34410 1.07498 1.22166 1.00663 1.00123 0.79919 1.22642 0.97304 0.98655 0.98393 1.22812 0.97420 1.02985 0.94077 1.22264 0.91078 0.90806 0.97633 0.92227 0.92785 0.92226 0.79904 0.78780 0.73954 0.88358 0.88366 0.90652 0.90676 0.90278 0.89663 0.89595 0.90399 0.91219 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 2 C 0.07 1.88 5.46 -17.82 -0.10 1.79 16 3 Si 0.91 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.53 -15.42 9.39 -34.44 -0.32 -15.74 16 8 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 9 C 0.26 7.14 6.19 -5.19 -0.03 7.11 16 10 N -0.33 -8.12 3.63 -61.65 -0.22 -8.34 16 11 N -0.24 -5.39 12.45 30.80 0.38 -5.00 16 12 C 0.07 1.28 11.87 -17.11 -0.20 1.07 16 13 C -0.33 -6.33 6.14 -106.82 -0.66 -6.98 16 14 C 0.36 8.17 8.04 -156.23 -1.26 6.91 16 15 N -0.55 -11.68 10.47 -13.97 -0.15 -11.83 16 16 C 0.37 6.06 12.24 -92.12 -1.13 4.93 16 17 N -0.62 -9.69 9.69 -13.62 -0.13 -9.83 16 18 C 0.51 8.18 7.55 -154.85 -1.17 7.01 16 19 N -0.70 -8.86 5.65 -61.26 -0.35 -9.21 16 20 C 0.12 1.16 5.40 -5.19 -0.03 1.14 16 21 C 0.52 5.34 7.92 -10.99 -0.09 5.25 16 22 O -0.54 -7.26 15.92 5.56 0.09 -7.17 16 23 N -0.62 -4.59 3.33 -170.52 -0.57 -5.16 16 24 C 0.09 0.41 6.48 -3.07 -0.02 0.39 16 25 C -0.13 -0.37 6.95 -24.90 -0.17 -0.54 16 26 C -0.13 -0.47 7.08 -24.57 -0.17 -0.64 16 27 C 0.10 0.64 6.91 -2.52 -0.02 0.63 16 28 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.05 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.06 1.68 8.14 -51.93 -0.42 1.26 16 31 H 0.18 2.44 8.06 -52.48 -0.42 2.02 16 32 H 0.20 2.37 8.06 -52.49 -0.42 1.94 16 33 H 0.42 5.27 7.30 -40.82 -0.30 4.98 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 40 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 41 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.59 8.03 -51.93 -0.42 0.17 16 LS Contribution 370.05 15.07 5.58 5.58 Total: -1.00 -35.27 370.05 -10.77 -46.04 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -5.76 Total: 0.95 kcal Atomic # 6 Polarization: 17.69 SS G_CDS: -5.37 Total: 12.33 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: -0.30 Total: -74.64 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: 0.09 Total: -7.17 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.27 -10.77 -46.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200210.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.855 kcal (2) G-P(sol) polarization free energy of solvation -35.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds