Wall clock time and date at job start Tue Mar 31 2020 06:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00096 * 2 1 4 4 H 1.48503 * 109.47098 * 240.00188 * 3 2 1 5 5 H 1.48500 * 109.46872 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47626 * 119.99791 * 3 2 1 7 7 C 1.37874 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00132 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00130 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47443 * 179.97438 * 9 7 2 11 11 N 1.40066 * 125.87243 * 270.00514 * 10 9 7 12 12 C 1.30244 * 109.69256 * 179.97438 * 11 10 9 13 13 C 1.41172 * 108.47384 * 359.76723 * 12 11 10 14 14 C 1.36317 * 125.87495 * 89.99720 * 10 9 7 15 15 N 1.33200 * 134.61576 * 0.02562 * 14 10 9 16 16 C 1.31503 * 120.68498 * 180.02562 * 15 14 10 17 17 N 1.32122 * 122.64223 * 359.97438 * 16 15 14 18 18 C 1.32863 * 121.19963 * 0.02562 * 17 16 15 19 19 N 1.38104 * 120.81737 * 179.97438 * 18 17 16 20 20 C 1.46506 * 119.99745 * 0.02562 * 19 18 17 21 21 C 1.50699 * 109.46928 * 179.97438 * 20 19 18 22 22 O 1.21282 * 120.00041 * 359.97438 * 21 20 19 23 23 N 1.34779 * 120.00037 * 179.97438 * 21 20 19 24 24 C 1.47021 * 125.64775 * 359.69699 * 23 21 20 25 25 C 1.54312 * 107.27753 * 180.96393 * 24 23 21 26 26 C 1.55158 * 102.86064 * 22.52455 * 25 24 23 27 27 C 1.47419 * 125.64900 * 179.97438 * 23 21 20 28 28 H 0.97001 * 119.99838 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46523 * 59.99735 * 9 7 2 30 30 H 1.08997 * 109.46946 * 299.99908 * 9 7 2 31 31 H 1.08006 * 125.76252 * 179.97438 * 12 11 10 32 32 H 1.07999 * 118.67821 * 179.97438 * 16 15 14 33 33 H 0.96999 * 120.00175 * 180.02562 * 19 18 17 34 34 H 1.09004 * 109.47073 * 299.99481 * 20 19 18 35 35 H 1.09000 * 109.47212 * 59.99563 * 20 19 18 36 36 H 1.08998 * 109.87938 * 300.51100 * 24 23 21 37 37 H 1.08997 * 109.88206 * 61.67078 * 24 23 21 38 38 H 1.08990 * 110.92503 * 264.11069 * 25 24 23 39 39 H 1.08998 * 110.59088 * 140.77927 * 25 24 23 40 40 H 1.09002 * 111.00709 * 206.22693 * 26 25 24 41 41 H 1.09001 * 111.00706 * 82.37850 * 26 25 24 42 42 H 1.09004 * 110.36902 * 274.67955 * 27 23 21 43 43 H 1.09001 * 110.37077 * 36.88726 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 7 2.7364 -4.2365 -1.1345 12 6 3.5497 -5.1869 -0.7715 13 6 3.5907 -5.2261 0.6390 14 6 2.7222 -4.2198 1.1051 15 7 2.5789 -4.0528 2.4188 16 6 3.2322 -4.8159 3.2675 17 7 4.0529 -5.7750 2.8776 18 6 4.2626 -6.0197 1.5887 19 7 5.1227 -7.0239 1.1899 20 6 5.8166 -7.8353 2.1932 21 6 6.6872 -8.8526 1.5018 22 8 6.7241 -8.8960 0.2903 23 7 7.4249 -9.7143 2.2298 24 6 7.4792 -9.7677 3.6980 25 6 8.4683 -10.8889 4.0796 26 6 9.3491 -11.0197 2.8089 27 6 8.3154 -10.7556 1.6856 28 1 -0.4850 0.8401 0.0004 29 1 0.6248 -2.5570 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 4.1021 -5.8334 -1.4373 32 1 3.0921 -4.6519 4.3258 33 1 5.2674 -7.1921 0.2456 34 1 6.4358 -7.1905 2.8169 35 1 5.0836 -8.3481 2.8160 36 1 7.8287 -8.8129 4.0909 37 1 6.4911 -9.9958 4.0974 38 1 7.9410 -11.8213 4.2808 39 1 9.0713 -10.5926 4.9379 40 1 9.7687 -12.0223 2.7258 41 1 10.1369 -10.2663 2.8003 42 1 7.7506 -11.6623 1.4687 43 1 8.8142 -10.3959 0.7856 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097200210.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:49 Heat of formation + Delta-G solvation = 64.585468 kcal Electronic energy + Delta-G solvation = -26964.434584 eV Core-core repulsion = 23045.415857 eV Total energy + Delta-G solvation = -3919.018728 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.85359 -41.20724 -39.85274 -38.58080 -37.12454 -35.72073 -33.86961 -33.00223 -32.79021 -31.35127 -30.02815 -29.25047 -28.08933 -25.55011 -25.12502 -24.42502 -23.50860 -22.04405 -21.60438 -20.56243 -19.48299 -18.84342 -18.68126 -18.25743 -17.64779 -17.33656 -17.08347 -16.71425 -16.50385 -16.01547 -15.38709 -15.30184 -15.08912 -14.92060 -14.83210 -14.42099 -14.36643 -14.15168 -13.85775 -13.68355 -13.60926 -13.22164 -13.05395 -12.74905 -12.49387 -12.40066 -12.30170 -12.16013 -12.11222 -11.82898 -11.55867 -11.55526 -11.14731 -10.75687 -10.68706 -10.11260 -9.81018 -9.73741 -9.06580 -8.35159 -6.52160 -0.06258 0.48270 1.31982 1.37195 1.37867 1.40680 1.47843 1.57894 1.60591 2.17809 2.32074 2.94302 2.98815 3.22349 3.33243 3.39653 3.63420 3.70366 3.74505 3.85086 4.06943 4.08488 4.31646 4.33459 4.39100 4.43034 4.51493 4.70269 4.82309 4.85599 4.88719 4.97153 5.02320 5.08221 5.16348 5.25928 5.39849 5.46691 5.50286 5.67951 5.77844 5.88701 6.04895 6.33724 6.49382 6.54014 6.71700 6.92895 7.16975 7.41722 8.72366 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.026110 B = 0.002211 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.147024 B =12662.417811 C =12910.780610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.019 3.981 3 Si 0.976 3.024 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.552 4.552 8 H 0.045 0.955 9 C 0.284 3.716 10 N -0.365 5.365 11 N -0.288 5.288 12 C 0.097 3.903 13 C -0.346 4.346 14 C 0.340 3.660 15 N -0.601 5.601 16 C 0.379 3.621 17 N -0.609 5.609 18 C 0.522 3.478 19 N -0.683 5.683 20 C 0.121 3.879 21 C 0.521 3.479 22 O -0.578 6.578 23 N -0.615 5.615 24 C 0.084 3.916 25 C -0.126 4.126 26 C -0.127 4.127 27 C 0.096 3.904 28 H 0.274 0.726 29 H 0.031 0.969 30 H 0.036 0.964 31 H 0.231 0.769 32 H 0.238 0.762 33 H 0.423 0.577 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.376 -25.258 11.855 33.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.182 4.182 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.591 4.591 8 H 0.064 0.936 9 C 0.166 3.834 10 N -0.151 5.151 11 N -0.103 5.103 12 C -0.098 4.098 13 C -0.364 4.364 14 C 0.093 3.907 15 N -0.328 5.328 16 C 0.086 3.914 17 N -0.340 5.340 18 C 0.268 3.732 19 N -0.317 5.317 20 C -0.006 4.006 21 C 0.310 3.690 22 O -0.458 6.458 23 N -0.348 5.348 24 C -0.037 4.037 25 C -0.163 4.163 26 C -0.165 4.165 27 C -0.026 4.026 28 H 0.083 0.917 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.247 0.753 32 H 0.254 0.746 33 H 0.263 0.737 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 18.415 -24.251 11.157 32.430 hybrid contribution 0.333 0.560 -0.907 1.117 sum 18.748 -23.691 10.250 31.903 Atomic orbital electron populations 1.70007 1.07357 1.28973 1.49345 1.25807 0.95945 1.02870 0.93566 0.85351 0.78321 0.77484 0.78965 1.19533 1.19294 1.19481 1.21347 0.92860 0.91151 1.53714 0.93638 1.19146 0.85928 0.80810 0.97562 1.49121 1.37159 1.28473 1.00366 1.76904 1.14019 1.10226 1.09168 1.24194 0.96564 0.96071 0.92949 1.19710 1.12745 1.07922 0.96021 1.19328 0.91720 0.90710 0.88921 1.67544 1.32080 1.33218 0.99978 1.25291 0.83265 0.82496 1.00305 1.68092 1.26652 1.25576 1.13654 1.17845 0.83678 0.83733 0.87956 1.44093 1.44408 1.32702 1.10532 1.21132 0.96231 0.92488 0.90699 1.20408 0.80194 0.81597 0.86810 1.90707 1.67101 1.72655 1.15363 1.48531 1.43872 1.33469 1.08969 1.22466 1.01989 1.01441 0.77839 1.22667 0.96875 0.98439 0.98360 1.22796 0.96654 1.03876 0.93198 1.22422 0.91634 0.90385 0.98175 0.91671 0.95140 0.94659 0.75298 0.74642 0.73689 0.86821 0.86625 0.89685 0.89549 0.89460 0.88057 0.87983 0.90533 0.90953 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.05 13.29 21.45 0.28 -54.77 16 2 C 0.02 1.10 5.46 84.65 0.46 1.56 16 3 Si 0.98 45.49 29.54 68.60 2.03 47.51 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.55 -33.37 9.39 25.60 0.24 -33.13 16 8 H 0.05 2.82 7.81 -2.91 -0.02 2.79 16 9 C 0.28 16.44 6.19 85.63 0.53 16.97 16 10 N -0.36 -18.76 3.63 -348.95 -1.27 -20.03 16 11 N -0.29 -13.22 12.45 -56.46 -0.70 -13.93 16 12 C 0.10 3.47 11.87 85.65 1.02 4.49 16 13 C -0.35 -12.94 6.14 -21.29 -0.13 -13.07 16 14 C 0.34 15.69 8.04 134.14 1.08 16.77 16 15 N -0.60 -25.71 10.47 -198.11 -2.07 -27.79 16 16 C 0.38 11.89 12.24 180.87 2.21 14.10 16 17 N -0.61 -17.42 9.69 -197.02 -1.91 -19.33 16 18 C 0.52 15.67 7.55 133.64 1.01 16.68 16 19 N -0.68 -15.69 5.65 -347.71 -1.97 -17.66 16 20 C 0.12 1.99 5.40 85.63 0.46 2.46 16 21 C 0.52 9.63 7.92 87.66 0.69 10.33 16 22 O -0.58 -15.16 15.92 -3.04 -0.05 -15.21 16 23 N -0.61 -7.79 3.33 -811.80 -2.70 -10.49 16 24 C 0.08 0.47 6.48 86.72 0.56 1.03 16 25 C -0.13 -0.26 6.95 31.78 0.22 -0.04 16 26 C -0.13 -0.55 7.08 31.99 0.23 -0.32 16 27 C 0.10 1.04 6.91 86.86 0.60 1.64 16 28 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 29 H 0.03 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.23 5.61 8.06 -2.91 -0.02 5.59 16 32 H 0.24 5.04 8.06 -2.91 -0.02 5.02 16 33 H 0.42 9.71 7.30 -92.71 -0.68 9.03 16 34 H 0.11 1.61 8.14 -2.38 -0.02 1.60 16 35 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.09 0.32 8.14 -2.39 -0.02 0.31 16 38 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 39 H 0.10 -0.05 8.14 -2.39 -0.02 -0.07 16 40 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 41 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 43 H 0.06 0.90 8.03 -2.39 -0.02 0.88 16 Total: -1.00 -80.96 370.05 1.20 -79.76 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.37 Total: 12.47 kcal Atomic # 6 Polarization: 30.26 SS G_CDS: 9.19 Total: 39.45 kcal Atomic # 7 Polarization: -153.66 SS G_CDS: -10.33 Total: -163.99 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.05 Total: -15.21 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -80.96 1.20 -79.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200210.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.348 kcal (2) G-P(sol) polarization free energy of solvation -80.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds