Wall clock time and date at job start Tue Mar 31 2020 05:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30503 * 125.64840 * 2 1 4 4 C 1.34127 * 109.25382 * 180.29021 * 3 2 1 5 5 C 1.34677 * 108.02036 * 359.72221 * 4 3 2 6 6 N 1.35044 * 125.64944 * 179.81841 * 2 1 3 7 7 C 1.46497 * 126.39788 * 359.97438 * 6 2 1 8 8 C 1.52995 * 109.47161 * 84.29490 * 7 6 2 9 9 C 1.53002 * 109.46902 * 184.66252 * 8 7 6 10 10 N 1.46498 * 109.47472 * 175.21011 * 9 8 7 11 11 C 1.46500 * 120.00102 * 83.15989 * 10 9 8 12 12 S 1.65599 * 119.99936 * 263.16600 * 10 9 8 13 13 O 1.42100 * 106.40291 * 20.64885 * 12 10 9 14 14 O 1.42102 * 106.40513 * 153.57197 * 12 10 9 15 15 N 1.65600 * 107.21946 * 267.11128 * 12 10 9 16 16 C 1.46496 * 119.99964 * 94.52597 * 15 12 10 17 17 C 1.46503 * 119.99924 * 274.53553 * 15 12 10 18 18 C 1.50698 * 109.47491 * 94.79392 * 17 15 12 19 19 H 1.08000 * 119.99671 * 5.13381 * 18 17 15 20 20 C 1.37875 * 120.00123 * 185.13150 * 18 17 15 21 21 N 1.31512 * 120.00176 * 184.93125 * 20 18 17 22 22 Si 1.86800 * 119.99902 * 4.93842 * 20 18 17 23 23 H 1.48501 * 109.47350 * 89.99297 * 22 20 18 24 24 H 1.48497 * 109.47037 * 209.99502 * 22 20 18 25 25 H 1.48501 * 109.47126 * 329.99163 * 22 20 18 26 26 H 1.09008 * 109.47127 * 274.70835 * 1 2 3 27 27 H 1.08996 * 109.47246 * 34.70685 * 1 2 3 28 28 H 1.08995 * 109.47368 * 154.71098 * 1 2 3 29 29 H 1.07998 * 125.99248 * 179.72752 * 4 3 2 30 30 H 1.07995 * 126.58831 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.46957 * 324.29484 * 7 6 2 32 32 H 1.08999 * 109.47084 * 204.30120 * 7 6 2 33 33 H 1.08992 * 109.47460 * 64.66464 * 8 7 6 34 34 H 1.09001 * 109.47287 * 304.65992 * 8 7 6 35 35 H 1.09006 * 109.47329 * 295.21127 * 9 8 7 36 36 H 1.08998 * 109.47577 * 55.20859 * 9 8 7 37 37 H 1.08992 * 109.47400 * 90.00360 * 11 10 9 38 38 H 1.09007 * 109.47068 * 210.00923 * 11 10 9 39 39 H 1.08995 * 109.47067 * 330.00153 * 11 10 9 40 40 H 1.09006 * 109.46956 * 90.00692 * 16 15 12 41 41 H 1.09004 * 109.47451 * 210.00273 * 16 15 12 42 42 H 1.09002 * 109.47641 * 330.00682 * 16 15 12 43 43 H 1.09000 * 109.46672 * 214.79726 * 17 15 12 44 44 H 1.08997 * 109.46662 * 334.79216 * 17 15 12 45 45 H 0.97002 * 120.00125 * 185.02304 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0605 0.0000 4 6 3.5543 0.6819 -0.0064 5 6 3.5925 -0.6643 -0.0043 6 7 2.2941 -1.0974 0.0035 7 6 1.8425 -2.4910 0.0084 8 6 1.5484 -2.9369 -1.4253 9 6 0.9670 -4.3521 -1.4100 10 7 0.5793 -4.7354 -2.7698 11 6 1.5827 -5.2676 -3.6951 12 16 -0.9932 -4.5671 -3.2609 13 8 -1.5883 -3.6204 -2.3841 14 8 -0.9577 -4.4044 -4.6721 15 7 -1.7530 -6.0106 -2.9757 16 6 -2.4935 -6.2147 -1.7282 17 6 -1.6845 -7.0836 -3.9708 18 6 -0.5530 -8.0172 -3.6259 19 1 0.0013 -7.8784 -2.7095 20 6 -0.2255 -9.0487 -4.4802 21 7 0.6962 -9.9210 -4.1349 22 14 -1.0907 -9.2070 -6.1281 23 1 -0.3381 -8.4461 -7.1575 24 1 -1.1541 -10.6384 -6.5184 25 1 -2.4679 -8.6625 -6.0184 26 1 -0.3634 0.0844 1.0243 27 1 -0.3633 0.8448 -0.5851 28 1 -0.3634 -0.9291 -0.4390 29 1 4.4098 1.3411 -0.0121 30 1 4.4776 -1.2832 -0.0085 31 1 0.9369 -2.5773 0.6088 32 1 2.6217 -3.1239 0.4332 33 1 2.4715 -2.9296 -2.0047 34 1 0.8297 -2.2538 -1.8780 35 1 1.7171 -5.0490 -1.0360 36 1 0.0913 -4.3783 -0.7616 37 1 1.6276 -6.3522 -3.5979 38 1 1.3097 -5.0053 -4.7173 39 1 2.5574 -4.8410 -3.4587 40 1 -3.5296 -5.9050 -1.8659 41 1 -2.4628 -7.2697 -1.4558 42 1 -2.0394 -5.6212 -0.9348 43 1 -2.6238 -7.6366 -3.9740 44 1 -1.5128 -6.6535 -4.9575 45 1 0.9786 -10.6030 -4.7643 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119082998.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:22 Heat of formation + Delta-G solvation = -11.619639 kcal Electronic energy + Delta-G solvation = -27348.510575 eV Core-core repulsion = 23529.338546 eV Total energy + Delta-G solvation = -3819.172029 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.151 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.18466 -37.16470 -36.78092 -35.71798 -35.39624 -34.62881 -32.54456 -31.81938 -31.01081 -28.51089 -27.19592 -26.63687 -25.29572 -24.59162 -22.07765 -21.94693 -21.45942 -19.83170 -18.49339 -17.62394 -17.13302 -16.96183 -16.79052 -15.99364 -15.66423 -15.35920 -14.74235 -14.30702 -14.23456 -14.11020 -13.75677 -13.57946 -13.20253 -13.09017 -13.03725 -12.67263 -12.58438 -12.47461 -12.41535 -12.33656 -12.11214 -11.98164 -11.86762 -11.56652 -11.37797 -11.35899 -11.26221 -10.94040 -10.74536 -10.54437 -10.31692 -10.05164 -9.75009 -9.69830 -8.78313 -8.72438 -8.43446 -8.17986 -6.25838 -4.26993 1.07438 1.93349 2.63418 3.06153 3.20161 3.26171 3.30900 3.32642 3.91165 4.27918 4.38486 4.41193 4.58848 4.67622 4.81824 4.84971 4.93665 5.06750 5.18755 5.20715 5.29615 5.39222 5.42466 5.44924 5.50227 5.67383 5.71786 5.78795 5.90260 5.96010 6.05946 6.08664 6.21007 6.28826 6.34773 6.50363 6.66938 6.71626 6.80718 7.00021 7.08223 7.30122 7.45301 8.02303 8.30984 8.76826 9.35107 10.85709 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.021957 B = 0.003191 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.901568 B = 8773.808093 C = 9283.253314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.209 3.791 3 N -0.497 5.497 4 C -0.032 4.032 5 C -0.060 4.060 6 N -0.453 5.453 7 C 0.105 3.895 8 C -0.156 4.156 9 C 0.134 3.866 10 N -1.003 6.003 11 C 0.086 3.914 12 S 2.787 3.213 13 O -0.994 6.994 14 O -0.980 6.980 15 N -0.993 5.993 16 C 0.105 3.895 17 C 0.214 3.786 18 C -0.541 4.541 19 H 0.082 0.918 20 C 0.078 3.922 21 N -0.891 5.891 22 Si 0.866 3.134 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.264 1.264 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.167 0.833 30 H 0.173 0.827 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.045 0.955 41 H 0.076 0.924 42 H 0.056 0.944 43 H 0.035 0.965 44 H 0.041 0.959 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.543 11.897 8.935 15.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.054 4.054 3 N -0.217 5.217 4 C -0.180 4.180 5 C -0.193 4.193 6 N -0.136 5.136 7 C -0.019 4.019 8 C -0.196 4.196 9 C 0.006 3.994 10 N -0.840 5.840 11 C -0.059 4.059 12 S 2.795 3.205 13 O -0.979 6.979 14 O -0.964 6.964 15 N -0.834 5.834 16 C -0.041 4.041 17 C 0.091 3.909 18 C -0.580 4.580 19 H 0.100 0.900 20 C -0.126 4.126 21 N -0.529 5.529 22 Si 0.692 3.308 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.188 1.188 26 H 0.098 0.902 27 H 0.107 0.893 28 H 0.100 0.900 29 H 0.185 0.815 30 H 0.190 0.810 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.875 13.091 8.514 15.728 hybrid contribution 0.461 -1.575 -0.759 1.808 sum 2.335 11.515 7.755 14.078 Atomic orbital electron populations 1.20272 0.84874 1.04571 1.03632 1.23363 0.95810 0.81347 1.04848 1.70243 1.02279 1.28433 1.20730 1.22260 0.94793 0.92806 1.08153 1.22700 0.87136 0.96882 1.12553 1.45473 1.06479 1.07472 1.54128 1.21879 1.02181 0.79094 0.98698 1.22461 1.03020 0.98584 0.95581 1.20998 1.01110 0.93779 0.83495 1.57719 1.27161 1.78844 1.20317 1.21627 0.90751 1.01035 0.92517 1.01762 0.72449 0.73127 0.73126 1.93527 1.76185 1.60254 1.67896 1.93556 1.86407 1.85843 1.30608 1.57491 1.65184 1.33077 1.27611 1.21263 0.95079 1.02979 0.84804 1.19596 0.98580 0.85822 0.86919 1.21433 1.16132 1.11337 1.09078 0.90044 1.24836 0.95043 0.94547 0.98136 1.69894 1.30798 1.16896 1.35273 0.87011 0.81190 0.77644 0.84963 1.19625 1.21011 1.18821 0.90180 0.89281 0.90031 0.81546 0.81014 0.88513 0.88522 0.90569 0.90538 0.90035 0.90082 0.90094 0.90593 0.92141 0.93631 0.90561 0.92556 0.94669 0.94093 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.11 36.01 0.36 -0.39 16 2 C 0.21 2.61 7.90 -155.41 -1.23 1.38 16 3 N -0.50 -7.03 11.25 -10.81 -0.12 -7.15 16 4 C -0.03 -0.38 11.87 -17.81 -0.21 -0.59 16 5 C -0.06 -0.62 11.58 -16.56 -0.19 -0.81 16 6 N -0.45 -4.92 2.75 -113.91 -0.31 -5.23 16 7 C 0.10 0.90 5.62 -4.05 -0.02 0.87 16 8 C -0.16 -1.66 5.85 -26.73 -0.16 -1.81 16 9 C 0.13 1.57 5.36 -4.04 -0.02 1.55 16 10 N -1.00 -15.63 3.24 -121.76 -0.40 -16.03 16 11 C 0.09 1.35 10.69 59.85 0.64 1.99 16 12 S 2.79 51.65 6.04 -107.50 -0.65 51.00 16 13 O -0.99 -18.11 15.90 -57.17 -0.91 -19.02 16 14 O -0.98 -21.26 15.45 -57.17 -0.88 -22.15 16 15 N -0.99 -19.00 3.23 -123.05 -0.40 -19.40 16 16 C 0.11 1.64 10.32 59.84 0.62 2.26 16 17 C 0.21 4.78 4.47 -5.19 -0.02 4.76 16 18 C -0.54 -13.48 9.25 -34.44 -0.32 -13.80 16 19 H 0.08 2.15 8.06 -52.49 -0.42 1.72 16 20 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 21 N -0.89 -24.77 13.95 55.43 0.77 -23.99 16 22 Si 0.87 20.04 27.36 -169.99 -4.65 15.39 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.26 -5.89 6.75 56.52 0.38 -5.51 16 26 H 0.08 0.67 8.14 -51.92 -0.42 0.24 16 27 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.08 0.80 7.22 -51.93 -0.37 0.43 16 29 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.10 0.72 7.84 -51.93 -0.41 0.31 16 32 H 0.10 0.63 8.13 -51.93 -0.42 0.20 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.96 7.73 -51.93 -0.40 0.56 16 35 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 36 H 0.08 0.89 7.46 -51.93 -0.39 0.50 16 37 H 0.08 1.47 7.44 -51.93 -0.39 1.09 16 38 H 0.08 1.28 7.04 -51.93 -0.37 0.91 16 39 H 0.06 0.76 8.07 -51.93 -0.42 0.34 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 42 H 0.06 0.75 7.67 -51.93 -0.40 0.36 16 43 H 0.04 0.77 7.74 -51.93 -0.40 0.37 16 44 H 0.04 0.96 5.97 -51.93 -0.31 0.65 16 45 H 0.27 7.00 8.32 -40.82 -0.34 6.66 16 LS Contribution 382.20 15.07 5.76 5.76 Total: -1.00 -32.80 382.20 -9.67 -42.47 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -7.23 Total: 0.99 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -0.65 Total: -2.63 kcal Atomic # 7 Polarization: -71.35 SS G_CDS: -0.45 Total: -71.81 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -1.79 Total: -41.16 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.65 Total: 15.39 kcal Atomic # 16 Polarization: 51.65 SS G_CDS: -0.65 Total: 51.00 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.80 -9.67 -42.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119082998.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.849 kcal (2) G-P(sol) polarization free energy of solvation -32.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds