Wall clock time and date at job start Tue Mar 31 2020 04:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38283 * 119.92878 * 2 1 4 4 C 1.38106 * 120.07354 * 180.02562 * 3 2 1 5 5 C 1.38869 * 119.92510 * 0.22717 * 4 3 2 6 6 N 1.39932 * 120.06903 * 179.72527 * 5 4 3 7 7 C 1.46502 * 119.99762 * 67.87910 * 6 5 4 8 8 C 1.50700 * 109.47139 * 90.00271 * 7 6 5 9 9 H 1.08000 * 119.99916 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00272 * 179.97438 * 8 7 6 11 11 N 1.31508 * 120.00547 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 119.99640 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47038 * 89.99897 * 12 10 8 14 14 H 1.48499 * 109.47028 * 209.99586 * 12 10 8 15 15 H 1.48496 * 109.47300 * 330.00105 * 12 10 8 16 16 C 1.34779 * 120.00300 * 247.87831 * 6 5 4 17 17 O 1.21291 * 119.99540 * 4.73434 * 16 6 5 18 18 C 1.50697 * 120.00017 * 184.73263 * 16 6 5 19 19 N 1.46503 * 109.46697 * 180.02562 * 18 16 6 20 20 N 1.40178 * 126.34988 * 269.68389 * 19 18 16 21 21 C 1.29397 * 108.13833 * 179.88014 * 20 19 18 22 22 N 1.37357 * 108.83336 * 0.38778 * 21 20 19 23 23 C 1.46499 * 125.83713 * 179.77051 * 22 21 20 24 24 C 1.34818 * 108.33065 * 359.74994 * 22 21 20 25 25 O 1.21814 * 126.30058 * 179.97438 * 24 22 21 26 26 C 1.38868 * 119.86207 * 359.49733 * 5 4 3 27 27 C 1.38118 * 119.92974 * 0.50418 * 26 5 4 28 28 H 1.08995 * 109.46855 * 90.00313 * 1 2 3 29 29 H 1.09005 * 109.46361 * 210.00016 * 1 2 3 30 30 H 1.08998 * 109.47145 * 329.99652 * 1 2 3 31 31 H 1.08003 * 119.96460 * 359.97438 * 3 2 1 32 32 H 1.07995 * 120.03834 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.47108 * 209.99988 * 7 6 5 34 34 H 1.08994 * 109.47001 * 330.00183 * 7 6 5 35 35 H 0.96997 * 120.00336 * 180.02562 * 11 10 8 36 36 H 1.08991 * 109.47168 * 300.00166 * 18 16 6 37 37 H 1.08999 * 109.47178 * 60.00178 * 18 16 6 38 38 H 1.08002 * 125.58265 * 180.13715 * 21 20 19 39 39 H 1.09001 * 109.46930 * 269.98131 * 23 22 21 40 40 H 1.09005 * 109.46577 * 29.97598 * 23 22 21 41 41 H 1.08996 * 109.47132 * 149.97346 * 23 22 21 42 42 H 1.08005 * 120.03960 * 180.22621 * 26 5 4 43 43 H 1.07994 * 119.96482 * 179.74839 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2739 0.0001 -0.0058 6 7 5.6732 0.0002 -0.0122 7 6 6.4109 0.4759 1.1607 8 6 6.6664 -0.6782 2.0955 9 1 6.3141 -1.6670 1.8415 10 6 7.3500 -0.4718 3.2749 11 7 7.5725 -1.4788 4.0910 12 14 7.9600 1.2384 3.7138 13 1 6.9124 1.9549 4.4848 14 1 9.1917 1.1287 4.5360 15 1 8.2607 1.9911 2.4696 16 6 6.3422 -0.4374 -1.0973 17 8 5.7343 -0.7502 -2.0992 18 6 7.8455 -0.5380 -1.0658 19 7 8.3288 -1.0346 -2.3565 20 7 8.5298 -2.3767 -2.7080 21 6 8.9590 -2.4136 -3.9281 22 7 9.0595 -1.1283 -4.4019 23 6 9.5133 -0.7403 -5.7398 24 6 8.6686 -0.2847 -3.4256 25 8 8.6299 0.9308 -3.4956 26 6 3.5781 -1.2017 0.0000 27 6 2.1970 -1.1984 0.0005 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3632 -0.8901 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 1.6552 2.1328 -0.0004 32 1 4.1163 2.1382 -0.0010 33 1 7.3619 0.9034 0.8429 34 1 5.8241 1.2369 1.6749 35 1 8.0531 -1.3334 4.9209 36 1 8.2715 0.4465 -0.8730 37 1 8.1471 -1.2255 -0.2755 38 1 9.2026 -3.3084 -4.4818 39 1 10.5933 -0.5930 -5.7285 40 1 9.2613 -1.5269 -6.4511 41 1 9.0230 0.1873 -6.0350 42 1 4.1164 -2.1380 -0.0005 43 1 1.6553 -2.1327 0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181106521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:57 Heat of formation + Delta-G solvation = 52.681692 kcal Electronic energy + Delta-G solvation = -28223.873718 eV Core-core repulsion = 24272.046052 eV Total energy + Delta-G solvation = -3951.827665 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.25751 -39.98740 -38.25380 -37.05729 -35.47183 -35.00439 -32.84043 -31.97243 -31.25691 -30.58893 -28.36176 -28.14699 -27.01159 -25.57951 -23.05150 -22.64648 -22.03896 -21.60637 -20.89193 -19.11110 -17.46077 -17.18480 -17.10780 -16.56186 -15.95129 -15.89420 -15.49429 -15.18965 -15.05532 -14.54815 -14.31511 -14.01290 -13.76718 -13.58998 -13.48723 -13.09886 -13.01395 -12.87124 -12.51191 -12.33095 -12.22728 -12.08175 -11.84341 -11.71034 -11.60107 -11.38544 -11.10295 -10.81176 -10.69688 -10.34885 -10.31308 -10.09519 -9.71300 -9.34959 -8.78327 -8.56590 -8.54029 -8.36107 -7.68058 -6.26893 -4.30394 1.64331 1.80409 1.84768 2.10888 2.83228 3.07858 3.15366 3.17673 3.22686 3.25324 3.69042 4.11629 4.22039 4.49658 4.75544 5.00075 5.05505 5.07796 5.09237 5.12358 5.15490 5.34804 5.35411 5.53410 5.55957 5.69705 5.74239 5.77601 5.86318 5.93322 6.03565 6.06355 6.23086 6.35919 6.42440 6.50685 6.62778 6.66854 6.90464 6.95099 7.10148 7.33772 7.52081 7.75832 7.87923 8.19286 8.28832 8.67901 8.79388 9.30694 10.85162 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.008131 B = 0.004910 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3442.881088 B = 5701.621354 C = 8081.469209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.102 4.102 3 C -0.114 4.114 4 C -0.121 4.121 5 C 0.168 3.832 6 N -0.552 5.552 7 C 0.206 3.794 8 C -0.546 4.546 9 H 0.082 0.918 10 C 0.081 3.919 11 N -0.885 5.885 12 Si 0.868 3.132 13 H -0.272 1.272 14 H -0.281 1.281 15 H -0.263 1.263 16 C 0.511 3.489 17 O -0.541 6.541 18 C 0.146 3.854 19 N -0.430 5.430 20 N -0.264 5.264 21 C 0.243 3.757 22 N -0.564 5.564 23 C 0.102 3.898 24 C 0.650 3.350 25 O -0.557 6.557 26 C -0.096 4.096 27 C -0.112 4.112 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.038 0.962 34 H 0.037 0.963 35 H 0.268 0.732 36 H 0.122 0.878 37 H 0.144 0.856 38 H 0.229 0.771 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.122 0.878 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.550 0.324 -14.236 14.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.102 4.102 3 C -0.133 4.133 4 C -0.141 4.141 5 C 0.077 3.923 6 N -0.280 5.280 7 C 0.086 3.914 8 C -0.584 4.584 9 H 0.100 0.900 10 C -0.123 4.123 11 N -0.522 5.522 12 Si 0.694 3.306 13 H -0.197 1.197 14 H -0.207 1.207 15 H -0.187 1.187 16 C 0.298 3.702 17 O -0.418 6.418 18 C 0.022 3.978 19 N -0.250 5.250 20 N -0.084 5.084 21 C -0.056 4.056 22 N -0.293 5.293 23 C -0.040 4.040 24 C 0.350 3.650 25 O -0.431 6.431 26 C -0.116 4.116 27 C -0.130 4.130 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.140 0.860 37 H 0.161 0.839 38 H 0.245 0.755 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.140 0.860 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.038 0.471 -13.728 13.887 hybrid contribution 0.655 1.119 -0.035 1.297 sum -1.383 1.590 -13.763 13.924 Atomic orbital electron populations 1.20722 0.91546 1.02399 1.01812 1.19821 0.95750 0.93220 1.01435 1.20753 0.93386 0.97340 1.01786 1.21158 0.94271 0.97312 1.01348 1.17494 0.82915 0.93004 0.98875 1.45518 1.03535 1.62829 1.16148 1.20028 0.91659 0.96514 0.83187 1.21296 1.37783 0.95667 1.03696 0.90013 1.24828 0.95075 0.96727 0.95700 1.69873 1.40178 1.30860 1.11255 0.86980 0.79181 0.84966 0.79503 1.19748 1.20676 1.18715 1.20725 0.90027 0.76808 0.82612 1.90668 1.69837 1.49347 1.31960 1.21391 0.91866 1.03158 0.81401 1.48384 1.60503 1.02800 1.13321 1.77021 1.19335 0.99434 1.12602 1.25863 0.98719 0.89211 0.91795 1.45838 1.61337 1.07052 1.15122 1.21752 1.00436 1.02708 0.79127 1.16671 0.81262 0.85726 0.81385 1.91056 1.62065 1.08585 1.81413 1.21234 0.94060 0.97723 0.98551 1.20827 0.93544 0.97381 1.01289 0.91650 0.91790 0.91864 0.86214 0.86090 0.94454 0.94518 0.92203 0.86001 0.83872 0.75468 0.91085 0.89540 0.89630 0.86017 0.86187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.01 36.01 0.36 -0.84 16 2 C -0.10 -1.54 5.88 -104.59 -0.62 -2.15 16 3 C -0.11 -1.78 9.69 -39.61 -0.38 -2.16 16 4 C -0.12 -2.20 9.69 -39.40 -0.38 -2.58 16 5 C 0.17 3.46 4.75 -83.69 -0.40 3.07 16 6 N -0.55 -11.89 2.51 -114.74 -0.29 -12.18 16 7 C 0.21 4.56 3.95 -5.19 -0.02 4.54 16 8 C -0.55 -14.08 9.71 -34.44 -0.33 -14.42 16 9 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 10 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 11 N -0.88 -25.20 13.96 55.43 0.77 -24.42 16 12 Si 0.87 19.51 27.47 -169.99 -4.67 14.84 16 13 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.26 -5.54 6.54 56.52 0.37 -5.17 16 16 C 0.51 11.10 7.60 -10.99 -0.08 11.01 16 17 O -0.54 -12.96 16.19 5.55 0.09 -12.87 16 18 C 0.15 2.83 5.53 -5.19 -0.03 2.80 16 19 N -0.43 -8.01 3.11 -66.31 -0.21 -8.22 16 20 N -0.26 -4.26 12.53 29.87 0.37 -3.89 16 21 C 0.24 2.75 12.66 -89.12 -1.13 1.62 16 22 N -0.56 -7.27 3.14 -130.11 -0.41 -7.67 16 23 C 0.10 0.80 11.05 59.85 0.66 1.46 16 24 C 0.65 11.84 8.60 -86.74 -0.75 11.09 16 25 O -0.56 -11.75 17.71 5.09 0.09 -11.66 16 26 C -0.10 -1.90 9.56 -39.39 -0.38 -2.27 16 27 C -0.11 -1.85 9.69 -39.61 -0.38 -2.23 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 30 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 31 H 0.12 1.51 8.06 -52.48 -0.42 1.08 16 32 H 0.12 2.04 8.06 -52.49 -0.42 1.61 16 33 H 0.04 0.78 5.53 -51.93 -0.29 0.50 16 34 H 0.04 0.80 7.29 -51.93 -0.38 0.42 16 35 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.12 2.21 7.22 -51.93 -0.38 1.84 16 37 H 0.14 2.77 7.91 -51.93 -0.41 2.36 16 38 H 0.23 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 42 H 0.12 2.49 8.06 -52.48 -0.42 2.06 16 43 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 374.49 15.07 5.64 5.64 Total: -1.00 -36.45 374.49 -8.24 -44.69 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.68 Total: 4.76 kcal Atomic # 6 Polarization: 14.94 SS G_CDS: -3.96 Total: 10.99 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: 0.25 Total: -56.38 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: 0.18 Total: -24.53 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -4.67 Total: 14.84 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.45 -8.24 -44.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181106521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.367 kcal (2) G-P(sol) polarization free energy of solvation -36.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds