Wall clock time and date at job start Tue Mar 31 2020 04:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38283 * 119.92878 * 2 1 4 4 C 1.38106 * 120.07354 * 180.02562 * 3 2 1 5 5 C 1.38869 * 119.92510 * 0.22717 * 4 3 2 6 6 N 1.39932 * 120.06903 * 179.72527 * 5 4 3 7 7 C 1.46502 * 119.99762 * 67.87910 * 6 5 4 8 8 C 1.50700 * 109.47139 * 90.00271 * 7 6 5 9 9 H 1.08000 * 119.99916 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00272 * 179.97438 * 8 7 6 11 11 N 1.31508 * 120.00547 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 119.99640 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47038 * 89.99897 * 12 10 8 14 14 H 1.48499 * 109.47028 * 209.99586 * 12 10 8 15 15 H 1.48496 * 109.47300 * 330.00105 * 12 10 8 16 16 C 1.34779 * 120.00300 * 247.87831 * 6 5 4 17 17 O 1.21291 * 119.99540 * 4.73434 * 16 6 5 18 18 C 1.50697 * 120.00017 * 184.73263 * 16 6 5 19 19 N 1.46503 * 109.46697 * 180.02562 * 18 16 6 20 20 N 1.40178 * 126.34988 * 269.68389 * 19 18 16 21 21 C 1.29397 * 108.13833 * 179.88014 * 20 19 18 22 22 N 1.37357 * 108.83336 * 0.38778 * 21 20 19 23 23 C 1.46499 * 125.83713 * 179.77051 * 22 21 20 24 24 C 1.34818 * 108.33065 * 359.74994 * 22 21 20 25 25 O 1.21814 * 126.30058 * 179.97438 * 24 22 21 26 26 C 1.38868 * 119.86207 * 359.49733 * 5 4 3 27 27 C 1.38118 * 119.92974 * 0.50418 * 26 5 4 28 28 H 1.08995 * 109.46855 * 90.00313 * 1 2 3 29 29 H 1.09005 * 109.46361 * 210.00016 * 1 2 3 30 30 H 1.08998 * 109.47145 * 329.99652 * 1 2 3 31 31 H 1.08003 * 119.96460 * 359.97438 * 3 2 1 32 32 H 1.07995 * 120.03834 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.47108 * 209.99988 * 7 6 5 34 34 H 1.08994 * 109.47001 * 330.00183 * 7 6 5 35 35 H 0.96997 * 120.00336 * 180.02562 * 11 10 8 36 36 H 1.08991 * 109.47168 * 300.00166 * 18 16 6 37 37 H 1.08999 * 109.47178 * 60.00178 * 18 16 6 38 38 H 1.08002 * 125.58265 * 180.13715 * 21 20 19 39 39 H 1.09001 * 109.46930 * 269.98131 * 23 22 21 40 40 H 1.09005 * 109.46577 * 29.97598 * 23 22 21 41 41 H 1.08996 * 109.47132 * 149.97346 * 23 22 21 42 42 H 1.08005 * 120.03960 * 180.22621 * 26 5 4 43 43 H 1.07994 * 119.96482 * 179.74839 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2739 0.0001 -0.0058 6 7 5.6732 0.0002 -0.0122 7 6 6.4109 0.4759 1.1607 8 6 6.6664 -0.6782 2.0955 9 1 6.3141 -1.6670 1.8415 10 6 7.3500 -0.4718 3.2749 11 7 7.5725 -1.4788 4.0910 12 14 7.9600 1.2384 3.7138 13 1 6.9124 1.9549 4.4848 14 1 9.1917 1.1287 4.5360 15 1 8.2607 1.9911 2.4696 16 6 6.3422 -0.4374 -1.0973 17 8 5.7343 -0.7502 -2.0992 18 6 7.8455 -0.5380 -1.0658 19 7 8.3288 -1.0346 -2.3565 20 7 8.5298 -2.3767 -2.7080 21 6 8.9590 -2.4136 -3.9281 22 7 9.0595 -1.1283 -4.4019 23 6 9.5133 -0.7403 -5.7398 24 6 8.6686 -0.2847 -3.4256 25 8 8.6299 0.9308 -3.4956 26 6 3.5781 -1.2017 0.0000 27 6 2.1970 -1.1984 0.0005 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3632 -0.8901 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 1.6552 2.1328 -0.0004 32 1 4.1163 2.1382 -0.0010 33 1 7.3619 0.9034 0.8429 34 1 5.8241 1.2369 1.6749 35 1 8.0531 -1.3334 4.9209 36 1 8.2715 0.4465 -0.8730 37 1 8.1471 -1.2255 -0.2755 38 1 9.2026 -3.3084 -4.4818 39 1 10.5933 -0.5930 -5.7285 40 1 9.2613 -1.5269 -6.4511 41 1 9.0230 0.1873 -6.0350 42 1 4.1164 -2.1380 -0.0005 43 1 1.6553 -2.1327 0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181106521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:56 Heat of formation + Delta-G solvation = 29.937374 kcal Electronic energy + Delta-G solvation = -28224.859985 eV Core-core repulsion = 24272.046052 eV Total energy + Delta-G solvation = -3952.813933 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.45036 -41.55280 -39.68850 -38.43842 -37.07865 -36.25769 -34.73258 -33.35397 -32.52534 -31.93907 -29.99953 -29.60864 -27.99208 -26.79902 -24.78241 -23.87878 -23.53802 -22.85715 -22.17166 -20.60972 -19.15284 -18.88465 -18.46591 -18.04538 -17.36197 -17.15500 -16.86896 -16.59118 -16.36122 -16.09514 -15.69599 -15.54260 -15.13377 -14.84747 -14.57884 -14.43630 -14.40966 -14.21718 -13.85788 -13.60820 -13.49996 -13.48277 -13.20716 -13.01599 -12.90676 -12.81549 -12.54993 -12.47942 -12.14881 -11.95704 -11.73914 -11.59689 -11.43508 -10.86743 -10.77336 -10.12090 -9.90857 -9.69586 -9.18726 -8.32921 -6.41922 0.27338 0.43732 0.62865 1.09493 1.38388 1.39227 1.39713 1.48561 1.52501 1.99791 2.28734 2.31284 2.74805 3.00069 3.41625 3.47509 3.90404 3.99353 4.01469 4.04249 4.06225 4.16807 4.38484 4.40276 4.45350 4.48778 4.53499 4.65364 4.74899 4.78129 4.81411 4.84406 4.89901 4.96490 5.09500 5.14159 5.32435 5.35863 5.51013 5.63488 5.65386 5.70674 6.02638 6.12942 6.34899 6.59727 6.62672 6.88409 7.01900 7.23669 8.82895 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.008131 B = 0.004910 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3442.881088 B = 5701.621354 C = 8081.469209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.095 4.095 3 C -0.109 4.109 4 C -0.133 4.133 5 C 0.125 3.875 6 N -0.552 5.552 7 C 0.214 3.786 8 C -0.543 4.543 9 H 0.033 0.967 10 C 0.028 3.972 11 N -0.935 5.935 12 Si 0.934 3.066 13 H -0.265 1.265 14 H -0.280 1.280 15 H -0.237 1.237 16 C 0.506 3.494 17 O -0.570 6.570 18 C 0.152 3.848 19 N -0.446 5.446 20 N -0.319 5.319 21 C 0.280 3.720 22 N -0.556 5.556 23 C 0.093 3.907 24 C 0.632 3.368 25 O -0.599 6.599 26 C -0.125 4.125 27 C -0.116 4.116 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.158 0.842 32 H 0.131 0.869 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.270 0.730 36 H 0.130 0.870 37 H 0.134 0.866 38 H 0.295 0.705 39 H 0.091 0.909 40 H 0.133 0.867 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.335 1.589 -15.941 16.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.095 4.095 3 C -0.127 4.127 4 C -0.152 4.152 5 C 0.035 3.965 6 N -0.279 5.279 7 C 0.094 3.906 8 C -0.581 4.581 9 H 0.052 0.948 10 C -0.172 4.172 11 N -0.574 5.574 12 Si 0.756 3.244 13 H -0.190 1.190 14 H -0.206 1.206 15 H -0.160 1.160 16 C 0.295 3.705 17 O -0.449 6.449 18 C 0.027 3.973 19 N -0.264 5.264 20 N -0.140 5.140 21 C -0.018 4.018 22 N -0.284 5.284 23 C -0.047 4.047 24 C 0.331 3.669 25 O -0.476 6.476 26 C -0.145 4.145 27 C -0.134 4.134 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.176 0.824 32 H 0.148 0.852 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.147 0.853 37 H 0.151 0.849 38 H 0.310 0.690 39 H 0.110 0.890 40 H 0.151 0.849 41 H 0.088 0.912 42 H 0.112 0.888 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.822 1.715 -15.485 15.833 hybrid contribution 0.810 0.567 0.366 1.054 sum -2.013 2.282 -15.119 15.422 Atomic orbital electron populations 1.20810 0.88040 1.04021 1.03304 1.20349 0.98178 0.92220 0.98744 1.21227 0.92424 0.99232 0.99850 1.21391 0.95681 0.96597 1.01579 1.17892 0.82572 0.94390 1.01652 1.45515 1.04348 1.62443 1.15621 1.19885 0.92702 0.95130 0.82925 1.21339 1.37239 0.94897 1.04647 0.94821 1.25686 0.95104 1.01094 0.95337 1.70025 1.41691 1.33599 1.12056 0.85913 0.78572 0.79688 0.80185 1.18996 1.20550 1.16006 1.21157 0.90945 0.76159 0.82279 1.90614 1.70640 1.50722 1.32945 1.21192 0.90346 1.03351 0.82405 1.48367 1.60751 1.04155 1.13131 1.77035 1.23259 0.98101 1.15652 1.27202 0.94151 0.90157 0.90280 1.46120 1.59911 1.06790 1.15590 1.22205 1.01491 1.03774 0.77221 1.17031 0.81690 0.85780 0.82370 1.90995 1.63933 1.10364 1.82331 1.21241 0.95735 0.96606 1.00897 1.21142 0.92249 0.99471 1.00577 0.90012 0.90652 0.89875 0.82415 0.85151 0.92734 0.93468 0.92055 0.85269 0.84859 0.68974 0.89027 0.84890 0.91240 0.88778 0.83925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.93 10.01 71.24 0.71 -1.22 16 2 C -0.09 -2.65 5.88 -19.84 -0.12 -2.77 16 3 C -0.11 -3.15 9.69 22.25 0.22 -2.94 16 4 C -0.13 -4.79 9.69 22.39 0.22 -4.57 16 5 C 0.13 5.37 4.75 38.15 0.18 5.56 16 6 N -0.55 -24.99 2.51 -635.30 -1.59 -26.58 16 7 C 0.21 9.72 3.95 85.63 0.34 10.06 16 8 C -0.54 -29.43 9.71 25.60 0.25 -29.18 16 9 H 0.03 2.10 8.06 -2.91 -0.02 2.08 16 10 C 0.03 1.51 5.47 84.66 0.46 1.97 16 11 N -0.94 -55.42 13.96 21.45 0.30 -55.12 16 12 Si 0.93 40.19 27.47 68.60 1.88 42.08 16 13 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 14 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 15 H -0.24 -9.16 6.54 99.48 0.65 -8.51 16 16 C 0.51 23.32 7.60 87.66 0.67 23.98 16 17 O -0.57 -28.84 16.19 -3.06 -0.05 -28.89 16 18 C 0.15 6.26 5.53 85.63 0.47 6.73 16 19 N -0.45 -17.18 3.11 -481.79 -1.50 -18.68 16 20 N -0.32 -10.38 12.53 -59.42 -0.74 -11.13 16 21 C 0.28 5.64 12.66 179.83 2.28 7.92 16 22 N -0.56 -13.42 3.14 -683.69 -2.15 -15.56 16 23 C 0.09 1.19 11.05 127.77 1.41 2.60 16 24 C 0.63 23.38 8.60 178.99 1.54 24.92 16 25 O -0.60 -26.03 17.71 -4.71 -0.08 -26.11 16 26 C -0.13 -5.23 9.56 22.39 0.21 -5.02 16 27 C -0.12 -3.83 9.69 22.25 0.22 -3.61 16 28 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.07 1.25 8.08 -2.38 -0.02 1.23 16 30 H 0.08 1.25 8.08 -2.39 -0.02 1.23 16 31 H 0.16 3.32 8.06 -2.91 -0.02 3.29 16 32 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 33 H 0.05 2.29 5.53 -2.39 -0.01 2.28 16 34 H 0.05 2.06 7.29 -2.39 -0.02 2.04 16 35 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 36 H 0.13 4.94 7.22 -2.39 -0.02 4.92 16 37 H 0.13 5.61 7.91 -2.39 -0.02 5.59 16 38 H 0.30 1.39 8.06 -2.91 -0.02 1.36 16 39 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.13 0.49 8.14 -2.38 -0.02 0.47 16 41 H 0.07 1.16 8.08 -2.39 -0.02 1.15 16 42 H 0.09 4.29 8.06 -2.91 -0.02 4.27 16 43 H 0.14 3.89 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -87.47 374.49 6.09 -81.38 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.97 Total: 24.18 kcal Atomic # 6 Polarization: 25.38 SS G_CDS: 9.06 Total: 34.44 kcal Atomic # 7 Polarization: -121.39 SS G_CDS: -5.68 Total: -127.08 kcal Atomic # 8 Polarization: -54.87 SS G_CDS: -0.13 Total: -55.00 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 1.88 Total: 42.08 kcal Total: -87.47 6.09 -81.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181106521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.315 kcal (2) G-P(sol) polarization free energy of solvation -87.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds