Wall clock time and date at job start Tue Mar 31 2020 06:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.37362 * 125.83545 * 2 1 4 4 N 1.29400 * 108.82821 * 180.02562 * 3 2 1 5 5 N 1.40166 * 108.14365 * 359.97438 * 4 3 2 6 6 C 1.46501 * 126.34967 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47153 * 269.94614 * 6 5 4 8 8 O 1.21278 * 119.99822 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00201 * 179.97438 * 7 6 5 10 10 C 1.46490 * 120.00139 * 175.10403 * 9 7 6 11 11 H 1.09000 * 109.47494 * 326.60674 * 10 9 7 12 12 C 1.53004 * 109.47268 * 86.60715 * 10 9 7 13 13 C 1.50699 * 109.47579 * 185.71916 * 12 10 9 14 14 H 1.07999 * 119.99609 * 355.55033 * 13 12 10 15 15 C 1.37870 * 120.00363 * 175.54882 * 13 12 10 16 16 N 1.31511 * 119.99974 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00107 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47208 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47265 * 120.00334 * 17 15 13 20 20 H 1.48506 * 109.47338 * 240.00115 * 17 15 13 21 21 C 1.50705 * 109.47492 * 206.60638 * 10 9 7 22 22 C 1.38236 * 119.99548 * 319.72936 * 21 10 9 23 23 C 1.38236 * 119.99811 * 179.78898 * 22 21 10 24 24 C 1.38235 * 119.99889 * 0.43387 * 23 22 21 25 25 C 1.38237 * 119.99949 * 359.82093 * 24 23 22 26 26 C 1.38228 * 120.00359 * 139.99752 * 21 10 9 27 27 C 1.34822 * 125.83323 * 179.97438 * 2 1 3 28 28 O 1.21812 * 126.29929 * 359.74256 * 27 2 1 29 29 H 1.08998 * 109.47104 * 270.00301 * 1 2 3 30 30 H 1.09004 * 109.47139 * 29.99926 * 1 2 3 31 31 H 1.08999 * 109.47292 * 150.00268 * 1 2 3 32 32 H 1.07996 * 125.58406 * 0.03061 * 3 2 1 33 33 H 1.09005 * 109.47186 * 29.94589 * 6 5 4 34 34 H 1.09001 * 109.47319 * 149.94285 * 6 5 4 35 35 H 0.97007 * 119.99692 * 355.10437 * 9 7 6 36 36 H 1.09000 * 109.47254 * 305.71983 * 12 10 9 37 37 H 1.09000 * 109.47464 * 65.71451 * 12 10 9 38 38 H 0.97010 * 120.00293 * 179.97438 * 16 15 13 39 39 H 1.07998 * 120.00000 * 359.97438 * 22 21 10 40 40 H 1.07997 * 120.00131 * 180.27513 * 23 22 21 41 41 H 1.08001 * 119.99697 * 179.83665 * 24 23 22 42 42 H 1.07999 * 119.99702 * 180.02562 * 25 24 23 43 43 H 1.08008 * 119.99901 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5065 0.7351 -0.0005 5 7 3.5343 -0.6663 -0.0003 6 6 4.7313 -1.5110 -0.0003 7 6 5.1408 -1.8020 -1.4210 8 8 4.4961 -1.3488 -2.3429 9 7 6.2236 -2.5659 -1.6673 10 6 6.5600 -2.9377 -3.0437 11 1 5.6438 -3.0597 -3.6214 12 6 7.4176 -1.8384 -3.6739 13 6 7.6464 -2.1522 -5.1299 14 1 7.2840 -3.0809 -5.5455 15 6 8.3182 -1.2539 -5.9315 16 7 8.7599 -0.1234 -5.4254 17 14 8.6023 -1.6433 -7.7363 18 1 8.0134 -2.9686 -8.0554 19 1 7.9591 -0.6003 -8.5750 20 1 10.0611 -1.6710 -8.0131 21 6 7.3282 -4.2342 -3.0404 22 6 8.2866 -4.4672 -2.0719 23 6 8.9882 -5.6583 -2.0662 24 6 8.7377 -6.6126 -3.0345 25 6 7.7830 -6.3773 -4.0061 26 6 7.0784 -5.1881 -4.0092 27 6 2.2542 -1.0930 0.0005 28 8 1.8805 -2.2524 0.0054 29 1 -0.3633 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 1.9250 2.1373 0.0005 33 1 5.5416 -0.9929 0.5126 34 1 4.5153 -2.4472 0.5146 35 1 6.7801 -2.8694 -0.9330 36 1 6.9042 -0.8810 -3.5849 37 1 8.3767 -1.7855 -3.1586 38 1 9.2329 0.5086 -5.9893 39 1 8.4851 -3.7200 -1.3178 40 1 9.7338 -5.8422 -1.3069 41 1 9.2877 -7.5420 -3.0316 42 1 7.5870 -7.1231 -4.7623 43 1 6.3323 -5.0044 -4.7683 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182619723.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:59 Heat of formation + Delta-G solvation = 14.181782 kcal Electronic energy + Delta-G solvation = -27744.095765 eV Core-core repulsion = 23790.598618 eV Total energy + Delta-G solvation = -3953.497147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.42002 -41.13404 -39.85581 -38.42607 -36.86343 -36.14279 -34.92192 -33.24865 -32.37749 -31.67799 -30.41177 -29.40557 -27.83950 -26.47809 -24.09132 -23.82144 -23.45256 -22.55172 -21.73701 -21.20103 -19.13367 -18.65863 -18.54736 -17.66333 -17.27715 -17.11346 -16.92638 -16.63510 -16.50058 -15.98182 -15.92604 -15.57450 -15.19952 -14.95590 -14.60956 -14.34398 -14.22102 -14.16104 -13.92201 -13.58394 -13.48607 -13.35817 -13.16218 -12.96297 -12.90949 -12.65235 -12.54228 -12.05189 -11.89122 -11.67934 -11.60366 -11.42874 -11.31384 -10.75340 -10.59223 -10.10875 -9.71410 -9.67665 -9.46428 -8.21793 -6.30678 0.52054 0.59694 0.67961 1.09183 1.34686 1.35831 1.48245 1.52995 1.54782 2.11115 2.32711 2.42314 2.98972 3.13198 3.45580 3.67469 3.84193 4.03389 4.05918 4.09540 4.10988 4.23810 4.34633 4.40507 4.46225 4.52759 4.71724 4.76892 4.78294 4.81647 4.87635 4.99457 5.13164 5.19839 5.26019 5.44394 5.52225 5.64270 5.67381 5.68495 5.73233 5.88097 6.18675 6.21860 6.50236 6.59928 6.81998 6.91289 7.21099 7.36732 8.90928 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.011000 B = 0.003519 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.764083 B = 7953.939222 C = 9602.513757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.559 5.559 3 C 0.277 3.723 4 N -0.315 5.315 5 N -0.445 5.445 6 C 0.147 3.853 7 C 0.487 3.513 8 O -0.580 6.580 9 N -0.706 5.706 10 C 0.200 3.800 11 H 0.051 0.949 12 C 0.041 3.959 13 C -0.526 4.526 14 H 0.063 0.937 15 C 0.003 3.997 16 N -0.932 5.932 17 Si 0.958 3.042 18 H -0.262 1.262 19 H -0.282 1.282 20 H -0.274 1.274 21 C -0.075 4.075 22 C -0.127 4.127 23 C -0.117 4.117 24 C -0.128 4.128 25 C -0.124 4.124 26 C -0.126 4.126 27 C 0.632 3.368 28 O -0.599 6.599 29 H 0.094 0.906 30 H 0.128 0.872 31 H 0.067 0.933 32 H 0.290 0.710 33 H 0.158 0.842 34 H 0.147 0.853 35 H 0.414 0.586 36 H -0.018 1.018 37 H 0.002 0.998 38 H 0.262 0.738 39 H 0.131 0.869 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.140 0.860 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.769 -3.241 16.114 19.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.287 5.287 3 C -0.021 4.021 4 N -0.136 5.136 5 N -0.264 5.264 6 C 0.022 3.978 7 C 0.273 3.727 8 O -0.459 6.459 9 N -0.359 5.359 10 C 0.096 3.904 11 H 0.070 0.930 12 C 0.003 3.997 13 C -0.565 4.565 14 H 0.081 0.919 15 C -0.195 4.195 16 N -0.573 5.573 17 Si 0.783 3.217 18 H -0.186 1.186 19 H -0.207 1.207 20 H -0.199 1.199 21 C -0.076 4.076 22 C -0.145 4.145 23 C -0.135 4.135 24 C -0.145 4.145 25 C -0.142 4.142 26 C -0.144 4.144 27 C 0.331 3.669 28 O -0.476 6.476 29 H 0.113 0.887 30 H 0.146 0.854 31 H 0.085 0.915 32 H 0.305 0.695 33 H 0.176 0.824 34 H 0.165 0.835 35 H 0.252 0.748 36 H 0.000 1.000 37 H 0.020 0.980 38 H 0.071 0.929 39 H 0.149 0.851 40 H 0.170 0.830 41 H 0.169 0.831 42 H 0.157 0.843 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.416 -3.339 15.439 18.389 hybrid contribution -0.295 0.007 -1.188 1.224 sum -9.711 -3.331 14.251 17.564 Atomic orbital electron populations 1.22174 0.71674 1.05799 1.05108 1.46129 1.10268 1.05826 1.66445 1.27121 0.84400 0.96196 0.94348 1.77020 1.20660 0.90492 1.25381 1.48365 1.05536 1.04112 1.68368 1.21420 0.86705 0.96787 0.92850 1.21663 0.80429 0.77888 0.92748 1.90717 1.55387 1.51864 1.47915 1.45969 1.28032 1.52448 1.09445 1.19703 0.96423 0.92623 0.81686 0.93040 1.19147 0.93234 0.92144 0.95176 1.21506 1.35489 1.04228 0.95260 0.91916 1.25874 0.95533 0.94762 1.03320 1.70111 1.39404 1.10112 1.37627 0.85494 0.78118 0.78547 0.79546 1.18570 1.20744 1.19940 1.19769 0.97676 0.93490 0.96638 1.21077 0.96009 0.98475 0.98928 1.21424 0.99416 0.93013 0.99599 1.21471 0.97865 1.00482 0.94713 1.21350 0.96612 0.96561 0.99659 1.21064 1.00938 0.94446 0.97975 1.17053 0.82764 0.85598 0.81526 1.91011 1.78509 1.17170 1.60896 0.88717 0.85362 0.91458 0.69506 0.82421 0.83548 0.74823 0.99977 0.97970 0.92907 0.85107 0.82984 0.83108 0.84252 0.87717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.08 11.05 127.77 1.41 2.49 16 2 N -0.56 -12.08 3.14 -683.70 -2.15 -14.23 16 3 C 0.28 4.85 12.66 179.82 2.28 7.12 16 4 N -0.31 -8.59 12.53 -59.42 -0.74 -9.34 16 5 N -0.45 -13.94 3.11 -481.77 -1.50 -15.44 16 6 C 0.15 4.08 6.87 85.63 0.59 4.67 16 7 C 0.49 18.92 7.87 87.66 0.69 19.61 16 8 O -0.58 -29.48 16.12 -3.02 -0.05 -29.53 16 9 N -0.71 -25.52 5.01 -446.11 -2.24 -27.75 16 10 C 0.20 9.00 2.19 44.25 0.10 9.09 16 11 H 0.05 2.64 7.46 -2.39 -0.02 2.62 16 12 C 0.04 2.28 4.73 29.85 0.14 2.42 16 13 C -0.53 -31.10 8.64 25.60 0.22 -30.87 16 14 H 0.06 3.58 6.44 -2.91 -0.02 3.56 16 15 C 0.00 0.16 5.46 84.65 0.46 0.63 16 16 N -0.93 -58.83 13.29 21.44 0.28 -58.54 16 17 Si 0.96 46.32 29.54 68.60 2.03 48.35 16 18 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 20 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 21 C -0.08 -2.89 4.49 -19.87 -0.09 -2.98 16 22 C -0.13 -3.98 9.06 22.27 0.20 -3.77 16 23 C -0.12 -3.01 10.05 22.27 0.22 -2.78 16 24 C -0.13 -3.22 10.05 22.27 0.22 -3.00 16 25 C -0.12 -3.67 10.05 22.27 0.22 -3.45 16 26 C -0.13 -4.67 8.63 22.27 0.19 -4.48 16 27 C 0.63 20.58 8.60 178.99 1.54 22.12 16 28 O -0.60 -23.57 17.71 -4.71 -0.08 -23.65 16 29 H 0.09 0.69 8.14 -2.39 -0.02 0.68 16 30 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.07 1.09 8.08 -2.39 -0.02 1.07 16 32 H 0.29 0.95 8.06 -2.91 -0.02 0.92 16 33 H 0.16 3.18 8.14 -2.38 -0.02 3.16 16 34 H 0.15 3.27 8.11 -2.39 -0.02 3.25 16 35 H 0.41 11.11 6.89 -92.70 -0.64 10.47 16 36 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 37 H 0.00 0.12 8.13 -2.39 -0.02 0.10 16 38 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 39 H 0.13 3.55 6.91 -2.91 -0.02 3.53 16 40 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 41 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 42 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 43 H 0.10 4.08 7.83 -2.91 -0.02 4.06 16 Total: -1.00 -97.56 375.11 4.36 -93.21 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.40 Total: 20.13 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 8.40 Total: 16.81 kcal Atomic # 7 Polarization: -118.96 SS G_CDS: -6.34 Total: -125.31 kcal Atomic # 8 Polarization: -53.05 SS G_CDS: -0.13 Total: -53.18 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -97.56 4.36 -93.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182619723.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.391 kcal (2) G-P(sol) polarization free energy of solvation -97.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds