Wall clock time and date at job start Tue Mar 31 2020 06:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37367 * 125.83008 * 2 1 4 4 N 1.29394 * 108.82762 * 179.77207 * 3 2 1 5 5 N 1.40168 * 108.14337 * 0.38395 * 4 3 2 6 6 C 1.46505 * 126.35094 * 179.87931 * 5 4 3 7 7 C 1.50697 * 109.47018 * 269.68641 * 6 5 4 8 8 O 1.21290 * 120.00067 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00181 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00556 * 180.02562 * 9 7 6 11 11 H 1.09009 * 109.46624 * 324.99750 * 10 9 7 12 12 C 1.52996 * 109.47466 * 205.00158 * 10 9 7 13 13 C 1.50702 * 109.47159 * 64.99479 * 12 10 9 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 10 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 12 10 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48504 * 109.47196 * 60.00645 * 17 15 13 19 19 H 1.48504 * 109.46887 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47679 * 300.00280 * 17 15 13 21 21 C 1.50700 * 109.47471 * 84.99708 * 10 9 7 22 22 C 1.38233 * 119.99377 * 39.72808 * 21 10 9 23 23 C 1.38237 * 119.99600 * 179.78842 * 22 21 10 24 24 C 1.38241 * 119.99990 * 0.44354 * 23 22 21 25 25 C 1.38237 * 119.99716 * 359.81238 * 24 23 22 26 26 C 1.38228 * 120.00326 * 220.00479 * 21 10 9 27 27 C 1.34816 * 125.83773 * 180.02562 * 2 1 3 28 28 O 1.21813 * 126.30071 * 359.97438 * 27 2 1 29 29 H 1.09000 * 109.47425 * 269.97583 * 1 2 3 30 30 H 1.09003 * 109.47563 * 29.98048 * 1 2 3 31 31 H 1.09006 * 109.47011 * 149.97764 * 1 2 3 32 32 H 1.08000 * 125.58400 * 0.02562 * 3 2 1 33 33 H 1.09003 * 109.47021 * 149.68900 * 6 5 4 34 34 H 1.08995 * 109.47163 * 29.68914 * 6 5 4 35 35 H 0.97002 * 120.00072 * 359.97438 * 9 7 6 36 36 H 1.09004 * 109.47066 * 304.99682 * 12 10 9 37 37 H 1.08994 * 109.47405 * 184.99512 * 12 10 9 38 38 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 39 39 H 1.07995 * 120.00514 * 359.97438 * 22 21 10 40 40 H 1.08001 * 120.00058 * 180.28006 * 23 22 21 41 41 H 1.07995 * 120.00194 * 179.83256 * 24 23 22 42 42 H 1.08001 * 119.99824 * 180.02562 * 25 24 23 43 43 H 1.08005 * 119.99906 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2691 1.1137 0.0000 4 7 3.5064 0.7354 0.0049 5 7 3.5344 -0.6660 -0.0007 6 6 4.7314 -1.5107 -0.0004 7 6 5.1417 -1.8009 -1.4211 8 8 4.4974 -1.3473 -2.3432 9 7 6.2240 -2.5654 -1.6672 10 6 6.6233 -2.8472 -3.0483 11 1 5.7339 -2.9406 -3.6717 12 6 7.4171 -4.1543 -3.0932 13 6 6.5219 -5.2996 -2.6954 14 1 5.4899 -5.1138 -2.4368 15 6 7.0188 -6.5855 -2.6676 16 7 8.2754 -6.8117 -2.9829 17 14 5.9072 -8.0059 -2.1820 18 1 4.7629 -8.0839 -3.1252 19 1 6.6765 -9.2753 -2.2302 20 1 5.3988 -7.7879 -0.8038 21 6 7.4814 -1.7204 -3.5630 22 6 8.4196 -1.1326 -2.7353 23 6 9.2098 -0.1019 -3.2087 24 6 9.0555 0.3471 -4.5070 25 6 8.1136 -0.2373 -5.3331 26 6 7.3265 -1.2708 -4.8609 27 6 2.2543 -1.0929 -0.0005 28 8 1.8807 -2.2523 -0.0006 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.9248 2.1374 0.0004 33 1 4.5151 -2.4472 0.5138 34 1 5.5414 -0.9929 0.5131 35 1 6.7391 -2.9286 -0.9298 36 1 8.2575 -4.0930 -2.4018 37 1 7.7896 -4.3186 -4.1043 38 1 8.6251 -7.7164 -2.9629 39 1 8.5373 -1.4805 -1.7197 40 1 9.9460 0.3544 -2.5635 41 1 9.6710 1.1541 -4.8761 42 1 7.9934 0.1132 -6.3475 43 1 6.5907 -1.7274 -5.5064 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182619742.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:03 Heat of formation + Delta-G solvation = 38.606998 kcal Electronic energy + Delta-G solvation = -27936.097172 eV Core-core repulsion = 23983.659182 eV Total energy + Delta-G solvation = -3952.437990 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.40874 -39.62899 -38.40950 -37.19607 -35.51947 -34.93898 -32.75656 -32.01905 -31.01606 -30.44880 -28.93751 -28.20617 -26.84409 -24.81921 -22.84651 -22.28840 -21.95471 -21.49581 -20.39188 -19.74719 -17.72570 -17.37503 -16.81403 -16.19906 -16.17350 -16.11513 -15.67841 -15.35945 -14.92804 -14.63232 -14.49374 -14.33868 -14.00492 -13.63809 -13.13704 -13.03916 -12.96293 -12.85593 -12.53277 -12.47376 -12.09874 -12.05728 -11.87439 -11.55843 -11.12020 -10.91760 -10.70893 -10.60800 -10.51355 -10.39874 -10.24605 -9.76930 -9.45175 -9.28092 -8.55003 -8.54443 -8.45895 -8.41098 -8.16907 -6.07354 -4.10861 1.64603 1.79705 1.81430 1.92316 2.71157 2.98656 3.06177 3.32507 3.36519 3.41469 3.73273 4.24692 4.34738 4.42792 4.60595 4.86160 4.98884 5.09356 5.18674 5.27301 5.27937 5.28077 5.29791 5.36067 5.39220 5.55110 5.75877 5.91416 5.94690 6.05256 6.17557 6.36246 6.43159 6.46697 6.58430 6.85399 6.85844 6.87569 7.11324 7.41321 7.49776 7.57693 7.61872 7.89430 8.01361 8.09844 8.27245 8.68497 8.95165 9.54639 11.03024 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.008064 B = 0.004527 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3471.259672 B = 6183.396879 C = 9026.414944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.563 5.563 3 C 0.249 3.751 4 N -0.271 5.271 5 N -0.433 5.433 6 C 0.141 3.859 7 C 0.496 3.504 8 O -0.536 6.536 9 N -0.696 5.696 10 C 0.186 3.814 11 H 0.086 0.914 12 C 0.025 3.975 13 C -0.522 4.522 14 H 0.058 0.942 15 C 0.062 3.938 16 N -0.892 5.892 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.071 4.071 22 C -0.108 4.108 23 C -0.124 4.124 24 C -0.135 4.135 25 C -0.123 4.123 26 C -0.108 4.108 27 C 0.651 3.349 28 O -0.549 6.549 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.229 0.771 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.402 0.598 36 H 0.025 0.975 37 H 0.035 0.965 38 H 0.262 0.738 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.493 18.647 6.598 21.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.293 5.293 3 C -0.050 4.050 4 N -0.092 5.092 5 N -0.253 5.253 6 C 0.015 3.985 7 C 0.279 3.721 8 O -0.413 6.413 9 N -0.346 5.346 10 C 0.082 3.918 11 H 0.104 0.896 12 C -0.012 4.012 13 C -0.560 4.560 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.072 4.072 22 C -0.126 4.126 23 C -0.142 4.142 24 C -0.153 4.153 25 C -0.141 4.141 26 C -0.127 4.127 27 C 0.350 3.650 28 O -0.421 6.421 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.245 0.755 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.237 0.763 36 H 0.044 0.956 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.069 18.211 5.918 20.412 hybrid contribution -0.988 -1.186 0.456 1.610 sum -8.057 17.025 6.374 19.884 Atomic orbital electron populations 1.21785 0.74366 1.04731 1.03253 1.45844 1.08747 1.06688 1.67980 1.25845 0.85865 0.94647 0.98632 1.76940 1.18218 0.91817 1.22240 1.48184 1.05532 1.02918 1.68659 1.21288 0.85441 0.95167 0.96560 1.20703 0.81227 0.79197 0.90989 1.90688 1.53343 1.51563 1.45680 1.45881 1.28487 1.50513 1.09751 1.20257 0.97077 0.93245 0.81229 0.89613 1.19385 0.94965 0.88185 0.98699 1.21112 0.97089 0.91453 1.46364 0.92403 1.24970 0.94978 0.98866 0.95174 1.69951 1.13606 1.21253 1.48302 0.86661 0.80657 0.81467 0.79286 1.20208 1.21311 1.20144 1.20531 0.96227 0.96374 0.94052 1.20900 0.95672 0.96329 0.99681 1.21041 0.99610 0.97686 0.95900 1.20994 0.99255 1.00575 0.94476 1.21034 0.96630 0.97036 0.99371 1.21011 0.99383 0.96648 0.95646 1.16663 0.81971 0.85061 0.81278 1.91109 1.77555 1.15209 1.58271 0.91006 0.89452 0.89452 0.75462 0.85726 0.85996 0.76296 0.95632 0.94730 0.92814 0.86508 0.86696 0.86843 0.86647 0.86287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.69 11.05 59.84 0.66 1.36 16 2 N -0.56 -6.40 3.14 -130.11 -0.41 -6.81 16 3 C 0.25 2.31 12.66 -89.12 -1.13 1.19 16 4 N -0.27 -3.59 12.53 29.87 0.37 -3.21 16 5 N -0.43 -6.73 3.11 -66.31 -0.21 -6.94 16 6 C 0.14 2.03 6.87 -5.19 -0.04 1.99 16 7 C 0.50 9.10 7.86 -10.99 -0.09 9.01 16 8 O -0.54 -11.98 16.09 5.55 0.09 -11.90 16 9 N -0.70 -12.58 4.02 -54.93 -0.22 -12.80 16 10 C 0.19 3.85 2.12 -69.08 -0.15 3.71 16 11 H 0.09 1.99 7.44 -51.92 -0.39 1.60 16 12 C 0.02 0.60 4.50 -27.88 -0.13 0.48 16 13 C -0.52 -14.03 8.84 -34.44 -0.30 -14.33 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 17 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C -0.07 -1.33 4.91 -104.63 -0.51 -1.84 16 22 C -0.11 -1.81 9.33 -39.58 -0.37 -2.17 16 23 C -0.12 -1.85 10.05 -39.58 -0.40 -2.25 16 24 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 25 C -0.12 -1.89 10.05 -39.59 -0.40 -2.29 16 26 C -0.11 -1.94 9.67 -39.59 -0.38 -2.32 16 27 C 0.65 10.74 8.60 -86.73 -0.75 9.99 16 28 O -0.55 -11.07 17.71 5.09 0.09 -10.98 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.74 8.08 -51.93 -0.42 0.32 16 32 H 0.23 0.73 8.06 -52.49 -0.42 0.31 16 33 H 0.12 1.66 8.11 -51.93 -0.42 1.24 16 34 H 0.12 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.40 6.39 8.60 -40.82 -0.35 6.04 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.12 1.79 7.71 -52.49 -0.40 1.39 16 40 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 43 H 0.12 2.07 8.04 -52.48 -0.42 1.64 16 LS Contribution 379.71 15.07 5.72 5.72 Total: -1.00 -38.61 379.71 -9.06 -47.67 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.75 Total: 5.95 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -4.47 Total: 1.79 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.27 Total: -54.81 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: 0.18 Total: -22.87 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.61 -9.06 -47.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182619742.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.277 kcal (2) G-P(sol) polarization free energy of solvation -38.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds