Wall clock time and date at job start Tue Mar 31 2020 05:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31511 * 120.00035 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 119.99998 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.46865 * 89.99417 * 9 7 5 11 11 H 1.48498 * 109.47233 * 209.99802 * 9 7 5 12 12 H 1.48508 * 109.47028 * 329.99943 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 3 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 3 17 17 C 1.52999 * 109.47004 * 179.97438 * 16 14 13 18 18 N 1.46500 * 109.47525 * 179.97438 * 17 16 14 19 19 N 1.39729 * 119.96243 * 269.72876 * 18 17 16 20 20 N 1.28360 * 122.95082 * 179.74897 * 19 18 17 21 21 C 1.35620 * 121.96991 * 0.49657 * 20 19 18 22 22 C 1.39736 * 121.33554 * 179.70309 * 21 20 19 23 23 C 1.37637 * 119.74292 * 180.08260 * 22 21 20 24 24 C 1.38882 * 120.80420 * 0.02562 * 23 22 21 25 25 C 1.37749 * 120.54263 * 359.97438 * 24 23 22 26 26 C 1.39385 * 119.56414 * 359.97438 * 25 24 23 27 27 C 1.35404 * 119.95215 * 89.99733 * 18 17 16 28 28 O 1.21738 * 121.32071 * 0.02562 * 27 18 17 29 29 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 31 31 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 32 32 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 33 33 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 34 34 H 0.97000 * 120.00229 * 179.97438 * 8 7 5 35 35 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 36 36 H 1.09003 * 109.47112 * 299.99065 * 16 14 13 37 37 H 1.08993 * 109.47916 * 59.99687 * 16 14 13 38 38 H 1.09000 * 109.47527 * 299.99994 * 17 16 14 39 39 H 1.09007 * 109.47302 * 59.99534 * 17 16 14 40 40 H 1.08001 * 120.12614 * 0.06534 * 22 21 20 41 41 H 1.07999 * 119.59587 * 180.02562 * 23 22 21 42 42 H 1.08004 * 119.72564 * 180.02562 * 24 23 22 43 43 H 1.07996 * 120.22130 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 5.4540 0.8795 1.3358 9 14 3.0964 0.1088 2.5701 10 1 2.8755 -1.3273 2.2633 11 1 3.7937 0.2347 3.8752 12 1 1.7876 0.8073 2.6387 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3374 2.6371 -0.4322 16 6 0.0408 3.3485 -2.6505 17 6 -1.3763 3.9091 -2.5152 18 7 -1.7615 4.5699 -3.7647 19 7 -1.4976 5.9302 -3.9449 20 7 -1.8056 6.5651 -5.0171 21 6 -2.4248 5.9567 -6.0591 22 6 -2.7596 6.6623 -7.2178 23 6 -3.3892 6.0124 -8.2550 24 6 -3.6975 4.6613 -8.1651 25 6 -3.3777 3.9441 -7.0334 26 6 -2.7390 4.5830 -5.9719 27 6 -2.3777 3.8629 -4.7413 28 8 -2.6232 2.6782 -4.6061 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 5.8771 0.4817 2.1127 35 1 2.2719 2.1232 -1.9977 36 1 0.7352 4.1620 -2.8606 37 1 0.0692 2.6266 -3.4666 38 1 -2.0705 3.0954 -2.3052 39 1 -1.4051 4.6310 -1.6989 40 1 -2.5256 7.7135 -7.2991 41 1 -3.6465 6.5600 -9.1497 42 1 -4.1914 4.1686 -8.9897 43 1 -3.6203 2.8937 -6.9688 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183807439.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:40 Heat of formation + Delta-G solvation = 24.011253 kcal Electronic energy + Delta-G solvation = -27378.827101 eV Core-core repulsion = 23425.756192 eV Total energy + Delta-G solvation = -3953.070909 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.69547 -39.49297 -38.90259 -38.10072 -35.67331 -34.91365 -32.49647 -32.23967 -31.73432 -31.45299 -30.58813 -27.62318 -26.15700 -25.53863 -23.67976 -22.73099 -22.54243 -20.68397 -20.01324 -19.61128 -19.24608 -17.70452 -17.08957 -16.49885 -16.24574 -15.82130 -15.72383 -15.63549 -15.25951 -15.11873 -14.54553 -14.41761 -14.08869 -13.71196 -13.49307 -13.20576 -13.11649 -12.90410 -12.69601 -12.51232 -12.33000 -12.25056 -11.91515 -11.79725 -11.33653 -11.09535 -10.91604 -10.90117 -10.63412 -10.50833 -10.41369 -9.93117 -9.80702 -9.58722 -9.25693 -9.18934 -8.88180 -8.76230 -8.10012 -6.21706 -4.24372 -0.48419 0.18539 1.41097 1.56723 2.13510 3.16039 3.22137 3.23710 3.24014 3.35379 3.40237 3.51707 3.90153 4.04248 4.22266 4.31104 4.53223 4.59150 4.75531 4.80887 4.87901 5.11784 5.13792 5.22134 5.31405 5.40531 5.42558 5.58252 5.62007 5.70143 5.85305 5.91134 5.97134 6.03260 6.10240 6.18405 6.65899 6.69805 6.83907 6.95408 7.17441 7.24366 7.28696 7.50142 7.85888 8.11798 8.49910 8.74117 8.88650 9.38956 10.90330 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.027733 B = 0.002357 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.367696 B =11876.726321 C =12212.671133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.242 3.758 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.080 0.920 7 C 0.078 3.922 8 N -0.892 5.892 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.698 5.698 14 C 0.512 3.488 15 O -0.550 6.550 16 C -0.159 4.159 17 C 0.139 3.861 18 N -0.452 5.452 19 N 0.094 4.906 20 N -0.208 5.208 21 C 0.062 3.938 22 C -0.072 4.072 23 C -0.085 4.085 24 C -0.105 4.105 25 C -0.051 4.051 26 C -0.152 4.152 27 C 0.524 3.476 28 O -0.496 6.496 29 H 0.031 0.969 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.267 0.733 35 H 0.396 0.604 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.149 0.851 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.053 10.303 -20.405 29.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C 0.139 3.861 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.529 5.529 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.184 1.184 13 N -0.345 5.345 14 C 0.296 3.704 15 O -0.430 6.430 16 C -0.201 4.201 17 C 0.017 3.983 18 N -0.277 5.277 19 N 0.108 4.892 20 N -0.100 5.100 21 C -0.047 4.047 22 C -0.095 4.095 23 C -0.105 4.105 24 C -0.126 4.126 25 C -0.071 4.071 26 C -0.162 4.162 27 C 0.314 3.686 28 O -0.367 6.367 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.229 0.771 36 H 0.117 0.883 37 H 0.111 0.889 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.167 0.833 41 H 0.160 0.840 42 H 0.159 0.841 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -18.078 10.349 -18.893 28.122 hybrid contribution -0.425 -1.439 -0.283 1.527 sum -18.503 8.909 -19.176 28.097 Atomic orbital electron populations 1.21872 0.96891 0.99099 1.02240 1.22286 0.94399 0.99943 1.01116 1.19172 0.95648 0.88525 0.82783 0.93172 1.21049 0.88601 1.39849 1.07862 0.90209 1.24838 0.94875 0.95130 0.97691 1.69865 1.08695 1.44491 1.29820 0.86897 0.80972 0.79959 0.80869 1.20262 1.22165 1.18414 1.46156 1.14853 1.55444 1.18080 1.19986 0.82762 0.79221 0.88446 1.90687 1.51354 1.60402 1.40549 1.21997 0.97342 1.02131 0.98607 1.21624 0.96334 0.98464 0.81843 1.51300 1.50990 1.07205 1.18219 1.80305 1.05950 0.89963 1.13005 1.73961 1.11660 1.26929 0.97402 1.19664 0.98882 0.91132 0.95044 1.21046 0.96959 1.00889 0.90568 1.21415 0.95805 0.94654 0.98576 1.21437 0.98931 0.94359 0.97828 1.21153 0.93849 1.00997 0.91052 1.20630 1.04937 0.93962 0.96652 1.18764 0.78659 0.87406 0.83758 1.90925 1.52791 1.13631 1.79364 0.94965 0.92824 0.92951 0.92323 0.92761 0.92272 0.77114 0.88297 0.88855 0.87022 0.87019 0.83284 0.84023 0.84147 0.83589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.52 37.16 0.32 -2.59 16 2 C -0.14 -3.09 5.11 -26.73 -0.14 -3.22 16 3 C 0.24 5.67 1.83 -69.08 -0.13 5.54 16 4 H 0.05 1.29 6.63 -51.93 -0.34 0.95 16 5 C -0.54 -14.37 9.31 -34.44 -0.32 -14.69 16 6 H 0.08 2.25 7.98 -52.49 -0.42 1.83 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16 8 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16 9 Si 0.88 21.75 24.41 -169.99 -4.15 17.60 16 10 H -0.28 -6.60 6.83 56.52 0.39 -6.22 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.26 -6.32 6.53 56.52 0.37 -5.95 16 13 N -0.70 -13.44 5.02 -54.93 -0.28 -13.71 16 14 C 0.51 9.07 6.41 -10.99 -0.07 9.00 16 15 O -0.55 -11.29 13.13 5.55 0.07 -11.22 16 16 C -0.16 -2.14 6.02 -27.88 -0.17 -2.31 16 17 C 0.14 1.81 5.03 -4.04 -0.02 1.79 16 18 N -0.45 -5.72 3.52 -61.31 -0.22 -5.93 16 19 N 0.09 1.13 12.77 60.35 0.77 1.90 16 20 N -0.21 -2.31 11.61 32.27 0.37 -1.93 16 21 C 0.06 0.60 6.72 -84.51 -0.57 0.04 16 22 C -0.07 -0.45 10.02 -39.24 -0.39 -0.84 16 23 C -0.09 -0.37 10.00 -39.56 -0.40 -0.77 16 24 C -0.11 -0.53 10.02 -39.52 -0.40 -0.93 16 25 C -0.05 -0.41 9.67 -39.33 -0.38 -0.79 16 26 C -0.15 -1.61 5.90 -104.76 -0.62 -2.23 16 27 C 0.52 6.91 7.76 -12.39 -0.10 6.81 16 28 O -0.50 -7.66 16.33 5.15 0.08 -7.58 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 31 H 0.05 1.03 5.66 -51.93 -0.29 0.74 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.05 1.27 3.21 -51.93 -0.17 1.10 16 34 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.40 6.77 8.54 -40.82 -0.35 6.42 16 36 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.11 1.58 7.44 -51.93 -0.39 1.19 16 39 H 0.11 1.39 8.10 -51.93 -0.42 0.97 16 40 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.14 0.18 8.06 -52.49 -0.42 -0.25 16 42 H 0.14 0.31 8.06 -52.48 -0.42 -0.11 16 43 H 0.15 1.11 7.81 -52.49 -0.41 0.70 16 LS Contribution 357.25 15.07 5.38 5.38 Total: -1.00 -33.11 357.25 -5.99 -39.10 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -5.34 Total: 5.11 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -3.47 Total: -3.09 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: 1.43 Total: -45.30 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: 0.16 Total: -18.80 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.15 Total: 17.60 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.11 -5.99 -39.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183807439.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.114 kcal (2) G-P(sol) polarization free energy of solvation -33.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds