Wall clock time and date at job start Tue Mar 31 2020 05:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46729 * 2 1 4 4 C 1.50697 * 109.47197 * 120.00090 * 2 1 3 5 5 H 1.08001 * 120.00008 * 120.00337 * 4 2 1 6 6 C 1.37882 * 119.99653 * 299.99848 * 4 2 1 7 7 N 1.31516 * 120.00182 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99534 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47345 * 90.00307 * 8 6 4 10 10 H 1.48507 * 109.47069 * 210.00407 * 8 6 4 11 11 H 1.48507 * 109.47600 * 330.00153 * 8 6 4 12 12 N 1.46498 * 109.47089 * 240.00603 * 2 1 3 13 13 C 1.46504 * 119.99479 * 299.99432 * 12 2 1 14 14 C 1.34776 * 120.00572 * 119.99951 * 12 2 1 15 15 O 1.21283 * 119.99655 * 359.97438 * 14 12 2 16 16 C 1.50697 * 120.00243 * 179.97438 * 14 12 2 17 17 C 1.53000 * 109.47242 * 179.97438 * 16 14 12 18 18 N 1.46493 * 109.47181 * 179.97438 * 17 16 14 19 19 N 1.39738 * 119.96019 * 269.72269 * 18 17 16 20 20 N 1.28348 * 122.95577 * 180.30743 * 19 18 17 21 21 C 1.35632 * 121.96564 * 359.93548 * 20 19 18 22 22 C 1.39732 * 121.33099 * 179.97438 * 21 20 19 23 23 C 1.37641 * 119.74275 * 180.02562 * 22 21 20 24 24 C 1.38882 * 120.80098 * 0.02562 * 23 22 21 25 25 C 1.37745 * 120.54097 * 0.02562 * 24 23 22 26 26 C 1.39375 * 119.56687 * 359.97438 * 25 24 23 27 27 C 1.35405 * 119.95905 * 90.00230 * 18 17 16 28 28 O 1.21736 * 121.31327 * 359.74039 * 27 18 17 29 29 H 1.09004 * 109.47025 * 59.99994 * 1 2 3 30 30 H 1.09003 * 109.46729 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47194 * 299.99717 * 1 2 3 32 32 H 0.96996 * 119.99450 * 179.97438 * 7 6 4 33 33 H 1.09006 * 109.46981 * 270.00071 * 13 12 2 34 34 H 1.08992 * 109.47211 * 30.00223 * 13 12 2 35 35 H 1.08997 * 109.46631 * 150.00675 * 13 12 2 36 36 H 1.08996 * 109.46921 * 59.99678 * 16 14 12 37 37 H 1.09001 * 109.47296 * 299.99660 * 16 14 12 38 38 H 1.09004 * 109.47000 * 59.99495 * 17 16 14 39 39 H 1.09001 * 109.46732 * 300.00048 * 17 16 14 40 40 H 1.08003 * 120.13386 * 0.06189 * 22 21 20 41 41 H 1.08000 * 119.59842 * 180.02562 * 23 22 21 42 42 H 1.07998 * 119.72756 * 180.02562 * 24 23 22 43 43 H 1.08001 * 120.21587 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3226 -1.1195 4.0079 9 1 3.6306 -0.5439 4.4118 10 1 1.3445 -0.9490 5.1122 11 1 2.4882 -2.5654 3.7122 12 7 2.0184 -0.6905 -1.1962 13 6 1.6645 -2.0931 -1.4280 14 6 2.7932 -0.0355 -2.0834 15 8 3.0858 1.1258 -1.8916 16 6 3.2960 -0.7460 -3.3136 17 6 4.1453 0.2159 -4.1468 18 7 4.6346 -0.4750 -5.3424 19 7 5.8590 -1.1475 -5.3078 20 7 6.3447 -1.7661 -6.3221 21 6 5.6964 -1.8130 -7.5125 22 6 6.2378 -2.4901 -8.6084 23 6 5.5521 -2.5163 -9.8016 24 6 4.3262 -1.8767 -9.9315 25 6 3.7724 -1.2018 -8.8660 26 6 4.4505 -1.1631 -7.6490 27 6 3.9024 -0.4564 -6.4812 28 8 2.8330 0.1227 -6.5365 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.7082 1.1609 3.4844 33 1 2.4159 -2.7376 -0.9717 34 1 0.6906 -2.3001 -0.9847 35 1 1.6239 -2.2851 -2.5002 36 1 2.4484 -1.0889 -3.9069 37 1 3.9017 -1.6021 -3.0167 38 1 4.9929 0.5593 -3.5536 39 1 3.5392 1.0718 -4.4437 40 1 7.1903 -2.9914 -8.5195 41 1 5.9724 -3.0407 -10.6470 42 1 3.8028 -1.9087 -10.8757 43 1 2.8190 -0.7059 -8.9730 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264015063.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:12 Heat of formation + Delta-G solvation = 29.274022 kcal Electronic energy + Delta-G solvation = -27403.945018 eV Core-core repulsion = 23451.102320 eV Total energy + Delta-G solvation = -3952.842698 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.65026 -39.37460 -38.80955 -38.05557 -35.58352 -34.92698 -32.92812 -32.18395 -31.49565 -30.93264 -29.20213 -26.30059 -26.02580 -25.50401 -25.18630 -23.59103 -22.66657 -20.90761 -19.97171 -19.20527 -18.35845 -17.42396 -16.69103 -16.36792 -16.34299 -15.76258 -15.62211 -15.42935 -15.14612 -15.00615 -14.50819 -14.31632 -14.04233 -13.52932 -13.35379 -13.15987 -12.81076 -12.65444 -12.63062 -12.45809 -12.23567 -12.19752 -11.59466 -11.51676 -11.27348 -11.05428 -10.87873 -10.82152 -10.70819 -10.45094 -10.35060 -10.24423 -10.16412 -9.77397 -9.19878 -9.05275 -8.82354 -8.42521 -7.62229 -6.07094 -4.15118 -0.44205 0.22059 1.44998 1.62480 2.17771 3.26693 3.27599 3.27733 3.29900 3.34406 3.37123 3.55896 3.91135 4.07535 4.25251 4.39971 4.56199 4.62376 4.85234 4.87042 4.93027 5.06394 5.22887 5.24486 5.35288 5.44020 5.45851 5.55239 5.65999 5.72695 5.76887 5.94523 5.96408 6.05687 6.14591 6.28140 6.76164 6.81892 7.05164 7.22677 7.40105 7.50681 7.71293 7.90838 8.00690 8.18887 8.49653 8.81477 8.99929 9.51307 10.98244 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.026330 B = 0.002362 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.151585 B =11853.603027 C =12245.822686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.257 3.743 3 H 0.065 0.935 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.590 5.590 13 C 0.086 3.914 14 C 0.512 3.488 15 O -0.553 6.553 16 C -0.156 4.156 17 C 0.137 3.863 18 N -0.451 5.451 19 N 0.095 4.905 20 N -0.210 5.210 21 C 0.063 3.937 22 C -0.072 4.072 23 C -0.086 4.086 24 C -0.106 4.106 25 C -0.051 4.051 26 C -0.152 4.152 27 C 0.524 3.476 28 O -0.496 6.496 29 H 0.012 0.988 30 H 0.030 0.970 31 H 0.094 0.906 32 H 0.263 0.737 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.149 0.851 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.859 -8.905 -25.301 27.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.157 3.843 3 H 0.083 0.917 4 C -0.564 4.564 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.321 5.321 13 C -0.058 4.058 14 C 0.297 3.703 15 O -0.432 6.432 16 C -0.197 4.197 17 C 0.016 3.984 18 N -0.276 5.276 19 N 0.109 4.891 20 N -0.101 5.101 21 C -0.047 4.047 22 C -0.095 4.095 23 C -0.105 4.105 24 C -0.126 4.126 25 C -0.070 4.070 26 C -0.162 4.162 27 C 0.314 3.686 28 O -0.367 6.367 29 H 0.031 0.969 30 H 0.049 0.951 31 H 0.113 0.887 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.167 0.833 41 H 0.159 0.841 42 H 0.158 0.842 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 8.083 -8.017 -24.259 26.797 hybrid contribution -0.641 -0.481 0.154 0.816 sum 7.441 -8.499 -24.105 26.621 Atomic orbital electron populations 1.22101 0.98201 0.99377 1.00929 1.18976 0.90901 0.94576 0.79849 0.91748 1.21307 1.31819 1.12993 0.90250 0.92273 1.24902 0.94946 0.95004 0.98991 1.69880 1.36297 1.22653 1.23764 0.86485 0.78659 0.79840 0.82326 1.20574 1.21142 1.19949 1.48227 1.48654 1.11703 1.23517 1.21578 1.01800 0.83184 0.99275 1.19949 0.79415 0.86977 0.83909 1.90669 1.58649 1.16919 1.77008 1.22008 1.01085 1.00123 0.96479 1.21663 1.00083 0.94235 0.82398 1.51324 1.16697 1.46093 1.13482 1.80306 0.93997 0.97244 1.17571 1.73971 1.25042 1.13529 0.97583 1.19672 0.92410 0.99151 0.93435 1.21040 1.00580 0.97384 0.90522 1.21409 0.94357 0.97252 0.97462 1.21427 0.95694 0.96422 0.99086 1.21149 0.99610 0.95977 0.90302 1.20631 0.96577 1.02702 0.96269 1.18764 0.85218 0.81495 0.83160 1.90925 1.20051 1.42918 1.82801 0.96919 0.95109 0.88728 0.92677 0.93115 0.90712 0.93109 0.89025 0.88546 0.87001 0.86997 0.83318 0.84060 0.84176 0.83597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 8.95 37.16 0.33 -3.23 16 2 C 0.26 6.59 2.64 -69.08 -0.18 6.41 16 3 H 0.06 1.91 6.90 -51.93 -0.36 1.55 16 4 C -0.52 -14.22 8.37 -34.44 -0.29 -14.51 16 5 H 0.06 1.58 7.65 -52.49 -0.40 1.18 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.20 11.32 55.43 0.63 -24.57 16 8 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 N -0.59 -12.62 2.75 -175.26 -0.48 -13.10 16 13 C 0.09 1.45 9.48 59.85 0.57 2.02 16 14 C 0.51 10.43 7.67 -10.99 -0.08 10.35 16 15 O -0.55 -13.24 15.31 5.55 0.09 -13.16 16 16 C -0.16 -2.36 4.58 -27.88 -0.13 -2.49 16 17 C 0.14 1.99 5.03 -4.05 -0.02 1.97 16 18 N -0.45 -6.11 3.52 -61.31 -0.22 -6.32 16 19 N 0.09 1.22 12.76 60.35 0.77 1.99 16 20 N -0.21 -2.44 11.61 32.27 0.37 -2.06 16 21 C 0.06 0.63 6.72 -84.51 -0.57 0.07 16 22 C -0.07 -0.48 10.02 -39.24 -0.39 -0.87 16 23 C -0.09 -0.40 10.00 -39.56 -0.40 -0.79 16 24 C -0.11 -0.56 10.02 -39.52 -0.40 -0.96 16 25 C -0.05 -0.43 9.67 -39.34 -0.38 -0.81 16 26 C -0.15 -1.68 5.90 -104.77 -0.62 -2.30 16 27 C 0.52 7.25 7.75 -12.39 -0.10 7.15 16 28 O -0.50 -8.01 16.33 5.16 0.08 -7.92 16 29 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 31 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 32 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.28 6.43 -51.93 -0.33 0.95 16 35 H 0.05 0.69 6.44 -51.93 -0.33 0.36 16 36 H 0.09 1.32 7.40 -51.93 -0.38 0.93 16 37 H 0.10 1.32 8.11 -51.93 -0.42 0.90 16 38 H 0.11 1.57 8.10 -51.93 -0.42 1.15 16 39 H 0.11 1.74 7.44 -51.93 -0.39 1.36 16 40 H 0.15 0.67 8.06 -52.48 -0.42 0.24 16 41 H 0.14 0.21 8.06 -52.49 -0.42 -0.21 16 42 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 43 H 0.15 1.16 7.81 -52.49 -0.41 0.75 16 LS Contribution 364.34 15.07 5.49 5.49 Total: -1.00 -33.24 364.34 -6.39 -39.63 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -5.36 Total: 0.26 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -2.74 Total: 3.67 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 1.07 Total: -44.07 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: 0.17 Total: -21.08 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.24 -6.39 -39.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264015063.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.902 kcal (2) G-P(sol) polarization free energy of solvation -33.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds