Wall clock time and date at job start Tue Mar 31 2020 05:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35320 * 126.12589 * 2 1 4 4 C 1.50699 * 126.03916 * 0.02562 * 3 2 1 5 5 H 1.09004 * 109.47103 * 39.71626 * 4 3 2 6 6 C 1.52997 * 109.47078 * 279.71494 * 4 3 2 7 7 N 1.46506 * 109.46928 * 159.71435 * 4 3 2 8 8 S 1.65602 * 120.00006 * 214.99606 * 7 4 3 9 9 O 1.42099 * 106.40173 * 178.53984 * 8 7 4 10 10 O 1.42097 * 106.40087 * 311.46690 * 8 7 4 11 11 N 1.65600 * 107.21496 * 65.00364 * 8 7 4 12 12 C 1.46507 * 120.00143 * 89.99654 * 11 8 7 13 13 C 1.46499 * 120.00422 * 270.00096 * 11 8 7 14 14 H 1.09005 * 109.46958 * 359.97438 * 13 11 8 15 15 C 1.52996 * 109.47295 * 119.99725 * 13 11 8 16 16 C 1.50701 * 109.47044 * 240.00082 * 13 11 8 17 17 H 1.07995 * 120.00309 * 359.97438 * 16 13 11 18 18 C 1.37885 * 119.99686 * 179.97438 * 16 13 11 19 19 N 1.31509 * 120.00197 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99615 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47408 * 60.00213 * 20 18 16 22 22 H 1.48495 * 109.46903 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46860 * 299.99987 * 20 18 16 24 24 C 1.39872 * 107.92003 * 179.75639 * 3 2 1 25 25 N 1.30835 * 108.20043 * 0.24459 * 24 3 2 26 26 N 1.34945 * 126.13033 * 180.17280 * 2 1 3 27 27 C 1.46504 * 126.03452 * 0.02562 * 26 2 1 28 28 H 1.08997 * 109.46995 * 90.00299 * 1 2 3 29 29 H 1.08994 * 109.46845 * 210.00278 * 1 2 3 30 30 H 1.08997 * 109.47142 * 330.00021 * 1 2 3 31 31 H 1.09002 * 109.47153 * 60.00207 * 6 4 3 32 32 H 1.09001 * 109.46832 * 180.02562 * 6 4 3 33 33 H 1.08996 * 109.46952 * 300.00035 * 6 4 3 34 34 H 0.96995 * 119.99699 * 35.00128 * 7 4 3 35 35 H 1.09005 * 109.46662 * 90.00102 * 12 11 8 36 36 H 1.08996 * 109.47625 * 210.00049 * 12 11 8 37 37 H 1.08996 * 109.47050 * 330.00504 * 12 11 8 38 38 H 1.09004 * 109.46539 * 180.02562 * 15 13 11 39 39 H 1.08993 * 109.47254 * 299.99982 * 15 13 11 40 40 H 1.08995 * 109.47155 * 60.00708 * 15 13 11 41 41 H 0.96996 * 120.00115 * 179.97438 * 19 18 16 42 42 H 1.07998 * 125.90019 * 180.25938 * 24 3 2 43 43 H 1.09007 * 109.47232 * 270.25728 * 27 26 2 44 44 H 1.08994 * 109.47090 * 30.25805 * 27 26 2 45 45 H 1.09002 * 109.47188 * 150.26036 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 1.8433 2.5276 0.0005 5 1 0.9797 2.6312 0.6576 6 6 1.4548 2.9389 -1.4210 7 7 2.9272 3.3891 0.4793 8 16 2.5797 4.7305 1.3861 9 8 3.8272 5.3245 1.7182 10 8 1.5474 5.4234 0.6983 11 7 1.9198 4.2019 2.8100 12 6 2.7851 3.9178 3.9576 13 6 0.4707 4.0182 2.9223 14 1 -0.0028 4.2775 1.9753 15 6 0.1665 2.5579 3.2621 16 6 -0.0657 4.9100 4.0123 17 1 0.6057 5.5492 4.5664 18 6 -1.4137 4.9097 4.3022 19 7 -2.2312 4.1309 3.6279 20 14 -2.0787 6.0156 5.6529 21 1 -1.7831 7.4329 5.3227 22 1 -3.5475 5.8293 5.7667 23 1 -1.4340 5.6631 6.9434 24 6 3.6335 0.6560 0.0057 25 7 3.6334 -0.6523 0.0036 26 7 2.3027 -1.0899 -0.0033 27 6 1.8540 -2.4845 -0.0080 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 0.6484 2.2979 -1.7772 32 1 1.1214 3.9766 -1.4206 33 1 2.3184 2.8353 -2.0779 34 1 3.8484 3.1738 0.2650 35 1 2.9009 4.8205 4.5576 36 1 2.3362 3.1325 4.5657 37 1 3.7622 3.5893 3.6034 38 1 -0.9118 2.4213 3.3451 39 1 0.5544 1.9129 2.4737 40 1 0.6398 2.2990 4.2092 41 1 -3.1794 4.1305 3.8321 42 1 4.5084 1.2892 0.0110 43 1 1.7379 -2.8324 1.0185 44 1 0.8980 -2.5568 -0.5264 45 1 2.5923 -3.1021 -0.5196 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282886802.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:11 Heat of formation + Delta-G solvation = 1.115502 kcal Electronic energy + Delta-G solvation = -28379.478252 eV Core-core repulsion = 24560.858460 eV Total energy + Delta-G solvation = -3818.619792 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.151 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.36419 -36.79505 -36.21167 -36.00039 -35.14278 -33.35039 -32.55881 -31.93600 -29.25455 -29.07253 -26.89360 -26.67391 -25.55377 -25.14306 -22.81443 -20.92195 -20.59583 -19.58613 -18.52150 -17.28368 -16.91772 -16.66740 -16.19346 -15.70970 -15.41541 -14.86229 -14.44893 -14.26487 -14.05187 -13.59848 -13.43509 -13.20720 -13.10872 -12.82478 -12.75701 -12.68237 -12.45324 -12.14136 -12.05364 -11.89056 -11.69240 -11.45834 -11.42576 -11.26179 -11.19267 -10.99150 -10.92584 -10.78967 -10.46325 -10.39541 -10.26785 -10.00518 -9.37668 -9.24880 -9.22896 -8.44417 -8.24149 -7.93859 -6.07194 -4.12525 1.27944 1.84849 2.47677 2.79480 3.31204 3.35098 3.39122 3.58545 4.18606 4.40303 4.42365 4.65546 4.93575 4.97879 5.06114 5.11375 5.20430 5.24457 5.29980 5.36209 5.46062 5.56195 5.60389 5.73965 5.78785 5.87705 6.03464 6.13987 6.20711 6.38220 6.45394 6.50897 6.62969 6.66934 6.78271 6.81322 6.99603 7.00778 7.24498 7.51492 7.65511 7.70583 7.80088 8.03998 8.28919 8.89276 9.53001 10.98568 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.013139 B = 0.004767 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.517553 B = 5871.769307 C = 6956.400263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.097 3.903 3 C -0.235 4.235 4 C 0.232 3.768 5 H 0.097 0.903 6 C -0.163 4.163 7 N -1.126 6.126 8 S 2.779 3.221 9 O -0.998 6.998 10 O -0.972 6.972 11 N -0.990 5.990 12 C 0.112 3.888 13 C 0.267 3.733 14 H 0.059 0.941 15 C -0.150 4.150 16 C -0.518 4.518 17 H 0.061 0.939 18 C 0.065 3.935 19 N -0.891 5.891 20 Si 0.897 3.103 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.061 3.939 25 N -0.301 5.301 26 N -0.376 5.376 27 C 0.102 3.898 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.406 0.594 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.048 0.952 38 H 0.093 0.907 39 H 0.013 0.987 40 H 0.033 0.967 41 H 0.263 0.737 42 H 0.178 0.822 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.921 -12.213 -8.182 15.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.031 4.031 3 C -0.247 4.247 4 C 0.123 3.877 5 H 0.114 0.886 6 C -0.223 4.223 7 N -0.884 5.884 8 S 2.788 3.212 9 O -0.983 6.983 10 O -0.956 6.956 11 N -0.833 5.833 12 C -0.034 4.034 13 C 0.164 3.836 14 H 0.077 0.923 15 C -0.209 4.209 16 C -0.558 4.558 17 H 0.080 0.920 18 C -0.138 4.138 19 N -0.530 5.530 20 Si 0.725 3.275 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.125 4.125 25 N -0.122 5.122 26 N -0.159 5.159 27 C -0.039 4.039 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.239 0.761 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.111 0.889 39 H 0.032 0.968 40 H 0.052 0.948 41 H 0.073 0.927 42 H 0.195 0.805 43 H 0.091 0.909 44 H 0.104 0.896 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.355 -12.517 -8.411 16.364 hybrid contribution -0.464 0.637 0.898 1.195 sum 5.891 -11.880 -7.513 15.241 Atomic orbital electron populations 1.20587 0.86994 1.04853 1.03378 1.20785 0.94582 0.86712 1.01007 1.19887 0.92690 0.94970 1.17176 1.18892 0.88673 0.84105 0.96001 0.88550 1.22288 1.01343 1.02782 0.95845 1.56260 1.14848 1.46796 1.70458 1.01983 0.72693 0.73395 0.73166 1.93543 1.45143 1.75220 1.84349 1.93597 1.58278 1.70471 1.73217 1.57680 1.16847 1.83645 1.25151 1.21105 0.91696 1.01124 0.89489 1.18733 0.72555 0.93456 0.98828 0.92307 1.22175 1.04228 0.96697 0.97822 1.21303 0.92807 1.23246 1.18411 0.92045 1.24876 0.96732 0.95637 0.96511 1.69826 1.03958 1.38484 1.40754 0.86576 0.77626 0.81255 0.82060 1.20162 1.21261 1.20313 1.23516 0.97495 0.91866 0.99644 1.77320 0.96644 1.12827 1.25421 1.48351 1.03888 1.05816 1.57838 1.21796 1.00852 0.77978 1.03291 0.90093 0.91049 0.88485 0.91903 0.90798 0.92536 0.76146 0.93387 0.91139 0.93336 0.88884 0.96827 0.94835 0.92718 0.80480 0.90857 0.89592 0.89497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 9.68 36.01 0.35 -0.66 16 2 C 0.10 1.21 6.93 -82.26 -0.57 0.64 16 3 C -0.23 -3.18 5.24 -105.05 -0.55 -3.73 16 4 C 0.23 3.39 2.93 -69.08 -0.20 3.18 16 5 H 0.10 1.59 4.84 -51.93 -0.25 1.34 16 6 C -0.16 -2.19 9.50 37.16 0.35 -1.83 16 7 N -1.13 -16.87 5.43 -5.88 -0.03 -16.90 16 8 S 2.78 54.12 6.00 -107.50 -0.65 53.47 16 9 O -1.00 -20.83 17.21 -57.17 -0.98 -21.82 16 10 O -0.97 -22.08 15.96 -57.17 -0.91 -22.99 16 11 N -0.99 -20.33 3.12 -115.85 -0.36 -20.70 16 12 C 0.11 2.04 9.53 59.85 0.57 2.61 16 13 C 0.27 6.29 1.91 -69.08 -0.13 6.16 16 14 H 0.06 1.52 6.74 -51.93 -0.35 1.17 16 15 C -0.15 -3.22 8.83 37.16 0.33 -2.89 16 16 C -0.52 -13.69 8.37 -34.44 -0.29 -13.98 16 17 H 0.06 1.63 7.65 -52.49 -0.40 1.23 16 18 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 19 N -0.89 -23.91 11.32 55.43 0.63 -23.29 16 20 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 C 0.06 0.80 11.24 -17.36 -0.20 0.61 16 25 N -0.30 -4.21 12.58 30.62 0.39 -3.83 16 26 N -0.38 -4.56 4.01 -63.88 -0.26 -4.81 16 27 C 0.10 0.79 11.09 59.85 0.66 1.45 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.60 7.74 -51.93 -0.40 0.20 16 30 H 0.10 1.14 7.35 -51.93 -0.38 0.75 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.11 7.64 -51.93 -0.40 0.72 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.41 5.01 7.32 -34.47 -0.25 4.76 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.24 6.43 -51.93 -0.33 0.91 16 37 H 0.05 0.76 7.79 -51.93 -0.40 0.35 16 38 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16 39 H 0.01 0.24 6.72 -51.93 -0.35 -0.10 16 40 H 0.03 0.70 6.66 -51.93 -0.35 0.36 16 41 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 42 H 0.18 1.90 7.06 -52.49 -0.37 1.52 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.09 0.46 7.67 -51.93 -0.40 0.06 16 45 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 371.89 15.07 5.60 5.60 Total: -1.00 -33.40 371.89 -7.99 -41.39 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -6.62 Total: 4.84 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 0.23 Total: -6.84 kcal Atomic # 7 Polarization: -69.89 SS G_CDS: 0.36 Total: -69.53 kcal Atomic # 8 Polarization: -42.91 SS G_CDS: -1.90 Total: -44.81 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 54.12 SS G_CDS: -0.65 Total: 53.47 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.40 -7.99 -41.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282886802.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.509 kcal (2) G-P(sol) polarization free energy of solvation -33.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds