Wall clock time and date at job start Tue Mar 31 2020 05:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30843 * 125.89966 * 2 1 4 4 N 1.40081 * 108.20676 * 180.25439 * 3 2 1 5 5 C 1.46497 * 126.03678 * 179.69678 * 4 3 2 6 6 C 1.34949 * 107.92273 * 359.71951 * 4 3 2 7 7 C 1.35313 * 107.74832 * 0.02562 * 6 4 3 8 8 C 1.50697 * 126.04036 * 180.02562 * 7 6 4 9 9 H 1.09002 * 109.47017 * 220.02181 * 8 7 6 10 10 C 1.53000 * 109.47728 * 100.01714 * 8 7 6 11 11 N 1.46506 * 109.47159 * 340.01251 * 8 7 6 12 12 S 1.65593 * 120.00421 * 215.00298 * 11 8 7 13 13 O 1.42104 * 106.40547 * 311.46323 * 12 11 8 14 14 O 1.42097 * 106.40195 * 178.54185 * 12 11 8 15 15 N 1.65602 * 107.22005 * 65.00090 * 12 11 8 16 16 C 1.46497 * 119.99830 * 270.00510 * 15 12 11 17 17 C 1.46500 * 119.99924 * 89.99858 * 15 12 11 18 18 H 1.09000 * 109.47175 * 0.02562 * 17 15 12 19 19 C 1.53006 * 109.46998 * 240.00432 * 17 15 12 20 20 C 1.50697 * 109.46896 * 120.00503 * 17 15 12 21 21 H 1.07994 * 120.00496 * 359.97438 * 20 17 15 22 22 C 1.37878 * 119.99687 * 179.97438 * 20 17 15 23 23 N 1.31518 * 120.00216 * 0.02562 * 22 20 17 24 24 Si 1.86797 * 120.00016 * 179.97438 * 22 20 17 25 25 H 1.48505 * 109.47195 * 90.00222 * 24 22 20 26 26 H 1.48504 * 109.47636 * 210.00509 * 24 22 20 27 27 H 1.48508 * 109.47108 * 330.00152 * 24 22 20 28 28 H 1.08999 * 109.47302 * 270.21432 * 1 2 3 29 29 H 1.08995 * 109.46907 * 30.21591 * 1 2 3 30 30 H 1.09002 * 109.46743 * 150.21123 * 1 2 3 31 31 H 1.08999 * 109.47155 * 270.02582 * 5 4 3 32 32 H 1.08994 * 109.47235 * 30.02758 * 5 4 3 33 33 H 1.08998 * 109.46820 * 150.02898 * 5 4 3 34 34 H 1.07999 * 126.12651 * 179.97438 * 6 4 3 35 35 H 1.08999 * 109.47555 * 180.02562 * 10 8 7 36 36 H 1.09003 * 109.46788 * 300.00064 * 10 8 7 37 37 H 1.09002 * 109.46694 * 59.99823 * 10 8 7 38 38 H 0.97003 * 119.99261 * 35.01213 * 11 8 7 39 39 H 1.08999 * 109.47264 * 269.99286 * 16 15 12 40 40 H 1.09000 * 109.47703 * 29.99667 * 16 15 12 41 41 H 1.09007 * 109.46950 * 150.00033 * 16 15 12 42 42 H 1.09000 * 109.47050 * 299.99945 * 19 17 15 43 43 H 1.09001 * 109.46801 * 60.00058 * 19 17 15 44 44 H 1.09001 * 109.46998 * 179.97438 * 19 17 15 45 45 H 0.96999 * 120.00239 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0059 5 6 4.7898 1.5008 -0.0142 6 6 3.6142 -0.7153 -0.0032 7 6 2.3272 -1.1330 0.0037 8 6 1.8600 -2.5657 0.0093 9 1 0.9961 -2.6687 -0.6474 10 6 1.4696 -2.9694 1.4326 11 7 2.9405 -3.4336 -0.4655 12 16 2.5879 -4.7774 -1.3667 13 8 1.5527 -5.4634 -0.6760 14 8 3.8330 -5.3778 -1.6958 15 7 1.9303 -4.2524 -2.7930 16 6 0.4819 -4.0636 -2.9061 17 6 2.7969 -3.9768 -3.9415 18 1 3.8340 -4.1734 -3.6697 19 6 2.6463 -2.5111 -4.3539 20 6 2.4027 -4.8656 -5.0929 21 1 1.5885 -5.5660 -4.9803 22 6 3.0817 -4.7845 -6.2902 23 7 4.0736 -3.9319 -6.4272 24 14 2.5936 -5.8867 -7.7172 25 1 1.5633 -5.2038 -8.5403 26 1 3.7871 -6.1710 -8.5539 27 1 2.0423 -7.1617 -7.1919 28 1 -0.3634 0.0038 1.0276 29 1 -0.3633 0.8880 -0.5172 30 1 -0.3633 -0.8919 -0.5106 31 1 5.0771 1.7137 -1.0439 32 1 4.5591 2.4343 0.4990 33 1 5.6121 0.9993 0.4962 34 1 4.4891 -1.3485 -0.0067 35 1 1.1322 -4.0058 1.4367 36 1 2.3335 -2.8663 2.0892 37 1 0.6657 -2.3236 1.7858 38 1 3.8626 -3.2211 -0.2519 39 1 0.0200 -4.9908 -3.2454 40 1 0.0741 -3.7893 -1.9332 41 1 0.2739 -3.2702 -3.6241 42 1 1.6092 -2.3149 -4.6259 43 1 2.9314 -1.8682 -3.5210 44 1 3.2914 -2.3058 -5.2082 45 1 4.5510 -3.8746 -7.2697 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282900529.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:21 Heat of formation + Delta-G solvation = 2.272539 kcal Electronic energy + Delta-G solvation = -28095.501784 eV Core-core repulsion = 24276.932165 eV Total energy + Delta-G solvation = -3818.569619 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.151 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.36070 -36.80088 -36.30406 -36.01626 -35.18234 -33.84838 -32.56068 -30.26191 -29.95846 -29.07250 -28.64525 -25.59606 -25.56297 -25.10621 -22.88992 -20.87477 -20.59340 -19.70704 -18.62206 -17.49806 -16.81378 -16.72100 -16.14530 -15.66552 -15.61887 -15.03515 -14.50066 -14.27101 -13.80175 -13.55575 -13.47566 -13.36559 -13.21775 -13.12769 -12.76992 -12.56657 -12.26102 -12.14528 -12.09148 -11.92545 -11.74102 -11.47984 -11.44689 -11.32181 -11.27709 -11.09207 -10.94657 -10.76678 -10.56946 -10.37206 -10.26128 -10.00252 -9.40755 -9.24035 -9.20554 -8.43985 -8.35125 -7.93463 -6.05483 -4.11657 1.25145 1.84161 2.44077 2.69115 3.29623 3.36496 3.40763 3.53189 4.14418 4.37860 4.42328 4.69615 4.89493 4.91563 4.99622 5.01961 5.23421 5.24796 5.25594 5.28268 5.38184 5.47989 5.56685 5.71661 5.73269 5.80603 5.90583 6.02154 6.15306 6.28580 6.30805 6.45267 6.64316 6.66163 6.81849 6.83766 6.93994 7.05339 7.17860 7.51655 7.66623 7.68613 7.81622 8.06694 8.30361 8.90729 9.54021 11.00204 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.013711 B = 0.004356 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.681664 B = 6426.319131 C = 7240.880370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.085 3.915 3 N -0.298 5.298 4 N -0.376 5.376 5 C 0.103 3.897 6 C 0.069 3.931 7 C -0.234 4.234 8 C 0.236 3.764 9 H 0.088 0.912 10 C -0.164 4.164 11 N -1.128 6.128 12 S 2.779 3.221 13 O -0.994 6.994 14 O -0.976 6.976 15 N -0.989 5.989 16 C 0.108 3.892 17 C 0.270 3.730 18 H 0.058 0.942 19 C -0.145 4.145 20 C -0.518 4.518 21 H 0.062 0.938 22 C 0.063 3.937 23 N -0.892 5.892 24 Si 0.898 3.102 25 H -0.281 1.281 26 H -0.286 1.286 27 H -0.273 1.273 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.171 0.829 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.407 0.593 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.072 0.928 42 H 0.032 0.968 43 H 0.010 0.990 44 H 0.091 0.909 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.692 10.019 14.488 17.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.082 4.082 3 N -0.121 5.121 4 N -0.158 5.158 5 C -0.038 4.038 6 C -0.078 4.078 7 C -0.246 4.246 8 C 0.128 3.872 9 H 0.105 0.895 10 C -0.223 4.223 11 N -0.885 5.885 12 S 2.788 3.212 13 O -0.977 6.977 14 O -0.960 6.960 15 N -0.832 5.832 16 C -0.038 4.038 17 C 0.167 3.833 18 H 0.075 0.925 19 C -0.205 4.205 20 C -0.558 4.558 21 H 0.081 0.919 22 C -0.139 4.139 23 N -0.530 5.530 24 Si 0.726 3.274 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.198 1.198 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.188 0.812 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.240 0.760 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.051 0.949 43 H 0.029 0.971 44 H 0.109 0.891 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.407 10.486 14.576 18.116 hybrid contribution 0.398 -0.807 -0.993 1.340 sum -2.009 9.679 13.583 16.799 Atomic orbital electron populations 1.20225 0.86692 1.03624 1.02894 1.22131 0.96813 0.89924 0.99344 1.77273 0.86369 1.22653 1.25779 1.48272 1.05507 1.04654 1.57345 1.21840 0.83598 0.94813 1.03562 1.22133 0.99218 0.84757 1.01648 1.19986 0.92202 0.95578 1.16883 1.18804 0.88535 0.84239 0.95671 0.89460 1.22297 1.01602 1.02508 0.95861 1.56353 1.14904 1.46399 1.70874 1.01965 0.73248 0.73342 0.72658 1.93541 1.58969 1.71321 1.73862 1.93608 1.44352 1.74348 1.83737 1.57666 1.14213 1.83811 1.27478 1.21199 0.80343 1.01950 1.00331 1.18697 0.89296 0.93019 0.82266 0.92477 1.22087 1.00791 0.96793 1.00814 1.21347 1.17527 1.20582 0.96313 0.91939 1.24905 0.94811 0.95588 0.98600 1.69863 1.21432 1.35887 1.25847 0.86504 0.77948 0.80997 0.81999 1.20685 1.21181 1.19814 0.90485 0.90825 0.90171 0.90609 0.89477 0.89537 0.81206 0.90952 0.92441 0.91751 0.76016 0.93196 0.93374 0.90966 0.94861 0.97093 0.89082 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.26 36.01 0.37 -0.36 16 2 C 0.08 1.09 7.22 -82.40 -0.59 0.50 16 3 N -0.30 -4.13 12.58 33.67 0.42 -3.71 16 4 N -0.38 -4.52 4.01 -68.17 -0.27 -4.80 16 5 C 0.10 0.79 11.47 59.85 0.69 1.48 16 6 C 0.07 0.82 10.71 -17.22 -0.18 0.64 16 7 C -0.23 -3.00 5.26 -105.06 -0.55 -3.55 16 8 C 0.24 3.05 3.00 -69.08 -0.21 2.84 16 9 H 0.09 1.13 5.55 -51.93 -0.29 0.84 16 10 C -0.16 -1.86 9.50 37.16 0.35 -1.51 16 11 N -1.13 -16.36 5.42 -5.88 -0.03 -16.39 16 12 S 2.78 53.37 6.00 -107.50 -0.65 52.73 16 13 O -0.99 -19.93 16.47 -57.17 -0.94 -20.87 16 14 O -0.98 -22.46 16.70 -57.17 -0.95 -23.41 16 15 N -0.99 -20.22 3.12 -115.85 -0.36 -20.59 16 16 C 0.11 1.89 9.32 59.85 0.56 2.45 16 17 C 0.27 6.57 2.62 -69.08 -0.18 6.39 16 18 H 0.06 1.54 6.91 -51.93 -0.36 1.18 16 19 C -0.15 -3.32 8.95 37.16 0.33 -2.98 16 20 C -0.52 -13.94 8.37 -34.44 -0.29 -14.23 16 21 H 0.06 1.68 7.65 -52.49 -0.40 1.27 16 22 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 23 N -0.89 -24.84 11.32 55.43 0.63 -24.22 16 24 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.71 7.50 -51.93 -0.39 0.32 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.17 1.62 6.99 -52.49 -0.37 1.25 16 35 H 0.07 0.91 7.64 -51.93 -0.40 0.51 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.41 5.09 7.29 -34.47 -0.25 4.84 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.69 6.17 -51.93 -0.32 0.37 16 41 H 0.07 1.23 6.43 -51.92 -0.33 0.90 16 42 H 0.03 0.72 6.66 -51.93 -0.35 0.37 16 43 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 45 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 374.89 15.07 5.65 5.65 Total: -1.00 -34.69 374.89 -8.04 -42.73 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.71 Total: 3.42 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 0.20 Total: -6.71 kcal Atomic # 7 Polarization: -70.09 SS G_CDS: 0.38 Total: -69.70 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -1.90 Total: -44.28 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 53.37 SS G_CDS: -0.65 Total: 52.73 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.69 -8.04 -42.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282900529.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.004 kcal (2) G-P(sol) polarization free energy of solvation -34.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds