Wall clock time and date at job start Tue Mar 31 2020 05:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30840 * 125.89938 * 2 1 4 4 N 1.40084 * 108.20553 * 179.97438 * 3 2 1 5 5 C 1.46502 * 126.03959 * 179.97438 * 4 3 2 6 6 C 1.34944 * 107.92639 * 359.75805 * 4 3 2 7 7 C 1.35317 * 107.74476 * 0.38520 * 6 4 3 8 8 C 1.50701 * 126.04173 * 179.87618 * 7 6 4 9 9 H 1.08995 * 109.47218 * 144.69125 * 8 7 6 10 10 C 1.53001 * 109.47257 * 264.69602 * 8 7 6 11 11 N 1.46504 * 109.46898 * 24.69110 * 8 7 6 12 12 S 1.65603 * 119.99815 * 145.00265 * 11 8 7 13 13 O 1.42105 * 106.40081 * 311.45945 * 12 11 8 14 14 O 1.42100 * 106.39968 * 178.53991 * 12 11 8 15 15 N 1.65603 * 107.21853 * 64.99851 * 12 11 8 16 16 C 1.46503 * 119.99904 * 269.99966 * 15 12 11 17 17 C 1.46496 * 119.99847 * 90.00274 * 15 12 11 18 18 H 1.09001 * 109.47459 * 359.97438 * 17 15 12 19 19 C 1.53006 * 109.46995 * 240.00000 * 17 15 12 20 20 C 1.50697 * 109.47428 * 119.99747 * 17 15 12 21 21 H 1.08001 * 119.99890 * 0.02562 * 20 17 15 22 22 C 1.37876 * 120.00428 * 179.97438 * 20 17 15 23 23 N 1.31510 * 119.99600 * 0.02562 * 22 20 17 24 24 Si 1.86805 * 120.00227 * 180.02562 * 22 20 17 25 25 H 1.48494 * 109.46938 * 59.99973 * 24 22 20 26 26 H 1.48494 * 109.46914 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.46873 * 299.99981 * 24 22 20 28 28 H 1.09002 * 109.47278 * 270.03377 * 1 2 3 29 29 H 1.09009 * 109.46985 * 30.03056 * 1 2 3 30 30 H 1.09001 * 109.47129 * 150.02983 * 1 2 3 31 31 H 1.08995 * 109.46811 * 89.97057 * 5 4 3 32 32 H 1.08993 * 109.47264 * 209.98022 * 5 4 3 33 33 H 1.09003 * 109.46696 * 329.97809 * 5 4 3 34 34 H 1.08002 * 126.13191 * 180.23884 * 6 4 3 35 35 H 1.08995 * 109.47396 * 59.99632 * 10 8 7 36 36 H 1.08997 * 109.47507 * 180.02562 * 10 8 7 37 37 H 1.09007 * 109.46658 * 299.99584 * 10 8 7 38 38 H 0.96992 * 120.00037 * 325.00145 * 11 8 7 39 39 H 1.08997 * 109.46807 * 269.99911 * 16 15 12 40 40 H 1.08998 * 109.47196 * 30.00196 * 16 15 12 41 41 H 1.09000 * 109.46808 * 150.00575 * 16 15 12 42 42 H 1.09001 * 109.47002 * 299.99701 * 19 17 15 43 43 H 1.08993 * 109.46955 * 60.00138 * 19 17 15 44 44 H 1.09000 * 109.47050 * 179.97438 * 19 17 15 45 45 H 0.97006 * 120.00212 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6341 0.0006 5 6 4.7899 1.5007 0.0003 6 6 3.6142 -0.7153 0.0064 7 6 2.3271 -1.1330 0.0007 8 6 1.8598 -2.5657 0.0014 9 1 0.9469 -2.6498 0.5909 10 6 1.5823 -3.0124 -1.4353 11 7 2.8986 -3.4178 0.5857 12 16 2.4743 -4.7343 1.4963 13 8 1.5023 -4.2809 2.4285 14 8 3.6886 -5.3627 1.8832 15 7 1.6978 -5.7964 0.4905 16 6 0.2446 -5.7170 0.3225 17 6 2.4641 -6.8153 -0.2311 18 1 3.5209 -6.7194 0.0179 19 6 2.2762 -6.6231 -1.7374 20 6 1.9765 -8.1850 0.1652 21 1 1.1756 -8.2864 0.8826 22 6 2.5521 -9.3087 -0.3887 23 7 3.5271 -9.1852 -1.2627 24 14 1.9471 -11.0066 0.1021 25 1 0.5075 -11.1364 -0.2377 26 1 2.7240 -12.0394 -0.6294 27 1 2.1296 -11.1936 1.5639 28 1 -0.3634 0.0006 1.0277 29 1 -0.3633 0.8898 -0.5144 30 1 -0.3633 -0.8903 -0.5134 31 1 5.0823 1.7167 1.0278 32 1 5.6095 0.9976 -0.5127 33 1 4.5566 2.4327 -0.5146 34 1 4.4891 -1.3486 0.0119 35 1 2.4952 -2.9283 -2.0248 36 1 1.2439 -4.0485 -1.4348 37 1 0.8094 -2.3784 -1.8700 38 1 3.8348 -3.2109 0.4391 39 1 -0.2420 -6.3484 1.0658 40 1 -0.0804 -4.6849 0.4534 41 1 -0.0247 -6.0588 -0.6769 42 1 1.2194 -6.7188 -1.9868 43 1 2.6289 -5.6324 -2.0240 44 1 2.8467 -7.3809 -2.2743 45 1 3.9323 -9.9758 -1.6522 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282900533.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:24 Heat of formation + Delta-G solvation = 1.539558 kcal Electronic energy + Delta-G solvation = -27801.292656 eV Core-core repulsion = 23982.691252 eV Total energy + Delta-G solvation = -3818.601403 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.151 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.44038 -36.79371 -36.41176 -35.96360 -35.18382 -33.92087 -32.56358 -30.33091 -29.98152 -29.07375 -28.66335 -25.72513 -25.51254 -25.10631 -22.89277 -20.91357 -20.58162 -19.77627 -18.63653 -17.52104 -16.95742 -16.62743 -16.11471 -15.73508 -15.57441 -15.10640 -14.54732 -14.33034 -13.83768 -13.57891 -13.54220 -13.39431 -13.25017 -13.13945 -12.79183 -12.58035 -12.29017 -12.20434 -12.09486 -11.88737 -11.72494 -11.53382 -11.46957 -11.25650 -11.17632 -11.15213 -10.93573 -10.77895 -10.57334 -10.43055 -10.24638 -10.00284 -9.41737 -9.32810 -9.20963 -8.43921 -8.41269 -7.94217 -6.05379 -4.11620 1.24724 1.74848 2.34999 2.61442 3.31708 3.35981 3.39314 3.53547 4.16239 4.29374 4.42217 4.62566 4.82804 4.88264 4.91356 5.04021 5.12349 5.16798 5.26186 5.30062 5.39277 5.51779 5.54915 5.67527 5.73332 5.78848 5.87563 6.01267 6.15182 6.29497 6.32321 6.49071 6.57873 6.66236 6.80875 6.81823 6.85796 7.04157 7.18183 7.51660 7.59875 7.66195 7.81726 8.06910 8.30306 8.90490 9.54078 11.00127 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.022623 B = 0.003380 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.378205 B = 8282.479189 C = 8397.996262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.085 3.915 3 N -0.299 5.299 4 N -0.379 5.379 5 C 0.104 3.896 6 C 0.064 3.936 7 C -0.230 4.230 8 C 0.231 3.769 9 H 0.093 0.907 10 C -0.170 4.170 11 N -1.128 6.128 12 S 2.779 3.221 13 O -0.995 6.995 14 O -0.976 6.976 15 N -0.989 5.989 16 C 0.108 3.892 17 C 0.270 3.730 18 H 0.058 0.942 19 C -0.149 4.149 20 C -0.520 4.520 21 H 0.062 0.938 22 C 0.064 3.936 23 N -0.891 5.891 24 Si 0.898 3.102 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.276 1.276 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.172 0.828 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.407 0.593 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.072 0.928 42 H 0.033 0.967 43 H 0.014 0.986 44 H 0.091 0.909 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.510 18.595 -2.016 18.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.082 4.082 3 N -0.122 5.122 4 N -0.160 5.160 5 C -0.038 4.038 6 C -0.082 4.082 7 C -0.243 4.243 8 C 0.123 3.877 9 H 0.111 0.889 10 C -0.229 4.229 11 N -0.885 5.885 12 S 2.788 3.212 13 O -0.979 6.979 14 O -0.960 6.960 15 N -0.832 5.832 16 C -0.039 4.039 17 C 0.167 3.833 18 H 0.076 0.924 19 C -0.208 4.208 20 C -0.559 4.559 21 H 0.080 0.920 22 C -0.138 4.138 23 N -0.530 5.530 24 Si 0.725 3.275 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.202 1.202 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.189 0.811 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.240 0.760 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.052 0.948 43 H 0.033 0.967 44 H 0.110 0.890 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.216 19.698 -1.151 19.769 hybrid contribution 0.325 -1.683 -0.289 1.739 sum -0.891 18.014 -1.439 18.094 Atomic orbital electron populations 1.20253 0.86569 1.03448 1.03342 1.22188 0.96917 0.89915 0.99180 1.77276 0.86367 1.22645 1.25877 1.48293 1.05512 1.04656 1.57577 1.21835 0.83676 0.94943 1.03326 1.22174 0.99296 0.84753 1.01939 1.20023 0.92169 0.95666 1.16430 1.18869 0.89971 0.84362 0.94547 0.88902 1.22434 1.02260 1.02632 0.95585 1.56312 1.14891 1.45275 1.72006 1.01943 0.73267 0.72332 0.73657 1.93541 1.62490 1.81959 1.59877 1.93609 1.46399 1.74610 1.81390 1.57679 1.14922 1.46028 1.64532 1.21189 0.80514 0.99455 1.02732 1.18697 0.91396 0.85012 0.88181 0.92432 1.22150 1.00313 0.99011 0.99354 1.21315 1.19584 0.90057 1.24972 0.92009 1.24895 0.94856 0.99183 0.94915 1.69847 1.24499 1.29694 1.28920 0.86568 0.78698 0.83408 0.78788 1.20255 1.21291 1.20201 0.90206 0.90876 0.90067 0.90840 0.89446 0.89405 0.81069 0.92089 0.90510 0.91878 0.76004 0.93263 0.93307 0.90891 0.94792 0.96691 0.89035 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.21 36.00 0.37 -0.35 16 2 C 0.08 1.05 7.22 -82.41 -0.59 0.46 16 3 N -0.30 -3.92 12.58 33.67 0.42 -3.49 16 4 N -0.38 -4.19 4.01 -68.16 -0.27 -4.47 16 5 C 0.10 0.68 11.47 59.85 0.69 1.36 16 6 C 0.06 0.72 10.72 -17.22 -0.18 0.54 16 7 C -0.23 -2.86 5.23 -105.05 -0.55 -3.41 16 8 C 0.23 2.97 3.04 -69.08 -0.21 2.76 16 9 H 0.09 1.22 7.01 -51.93 -0.36 0.85 16 10 C -0.17 -2.02 9.49 37.16 0.35 -1.67 16 11 N -1.13 -16.36 5.45 -5.88 -0.03 -16.39 16 12 S 2.78 53.46 6.08 -107.50 -0.65 52.80 16 13 O -1.00 -20.53 16.55 -57.17 -0.95 -21.48 16 14 O -0.98 -22.47 16.70 -57.17 -0.95 -23.42 16 15 N -0.99 -19.68 2.79 -115.85 -0.32 -20.00 16 16 C 0.11 1.82 8.39 59.85 0.50 2.33 16 17 C 0.27 6.39 2.62 -69.08 -0.18 6.21 16 18 H 0.06 1.52 6.91 -51.93 -0.36 1.16 16 19 C -0.15 -3.21 8.66 37.16 0.32 -2.89 16 20 C -0.52 -13.77 8.37 -34.44 -0.29 -14.06 16 21 H 0.06 1.63 7.65 -52.49 -0.40 1.23 16 22 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 23 N -0.89 -24.47 11.32 55.43 0.63 -23.84 16 24 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 30 H 0.08 0.65 7.70 -51.93 -0.40 0.25 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.17 1.47 7.08 -52.49 -0.37 1.09 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.00 5.56 -51.93 -0.29 0.71 16 37 H 0.06 0.64 7.88 -51.92 -0.41 0.23 16 38 H 0.41 5.10 7.35 -34.47 -0.25 4.84 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.68 7.35 -51.93 -0.38 0.30 16 41 H 0.07 1.18 6.43 -51.93 -0.33 0.85 16 42 H 0.03 0.69 6.66 -51.93 -0.35 0.34 16 43 H 0.01 0.27 7.41 -51.93 -0.38 -0.12 16 44 H 0.09 2.23 6.07 -51.93 -0.32 1.92 16 45 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 373.41 15.07 5.63 5.63 Total: -1.00 -34.56 373.41 -8.10 -42.66 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -6.70 Total: 3.14 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 0.13 Total: -7.12 kcal Atomic # 7 Polarization: -68.62 SS G_CDS: 0.42 Total: -68.19 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -1.90 Total: -44.90 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 53.46 SS G_CDS: -0.65 Total: 52.80 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.56 -8.10 -42.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282900533.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.196 kcal (2) G-P(sol) polarization free energy of solvation -34.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds