Wall clock time and date at job start Tue Mar 31 2020 05:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30844 * 125.89671 * 2 1 4 4 N 1.40085 * 108.20437 * 180.26386 * 3 2 1 5 5 C 1.46496 * 126.03981 * 179.69960 * 4 3 2 6 6 C 1.34955 * 107.92319 * 359.71601 * 4 3 2 7 7 C 1.50699 * 126.12474 * 179.97438 * 6 4 3 8 8 C 1.35308 * 107.74461 * 0.02562 * 6 4 3 9 9 C 1.50701 * 126.03916 * 179.97438 * 8 6 4 10 10 N 1.46508 * 109.47193 * 89.99935 * 9 8 6 11 11 S 1.65595 * 119.99876 * 165.00215 * 10 9 8 12 12 O 1.42105 * 106.40149 * 178.54167 * 11 10 9 13 13 O 1.42098 * 106.40317 * 311.46040 * 11 10 9 14 14 N 1.65606 * 107.22013 * 65.00349 * 11 10 9 15 15 C 1.46504 * 119.99819 * 269.99910 * 14 11 10 16 16 C 1.46489 * 120.00129 * 89.99663 * 14 11 10 17 17 H 1.09006 * 109.47494 * 0.02562 * 16 14 11 18 18 C 1.53001 * 109.47367 * 239.99892 * 16 14 11 19 19 C 1.50706 * 109.47403 * 120.00178 * 16 14 11 20 20 H 1.07999 * 119.99433 * 359.97438 * 19 16 14 21 21 C 1.37871 * 120.00236 * 179.97438 * 19 16 14 22 22 N 1.31509 * 120.00376 * 0.02562 * 21 19 16 23 23 Si 1.86802 * 119.99846 * 179.97438 * 21 19 16 24 24 H 1.48508 * 109.47019 * 90.00103 * 23 21 19 25 25 H 1.48501 * 109.47000 * 210.00061 * 23 21 19 26 26 H 1.48501 * 109.47230 * 330.00284 * 23 21 19 27 27 H 1.09007 * 109.46672 * 270.20851 * 1 2 3 28 28 H 1.08994 * 109.47410 * 30.20851 * 1 2 3 29 29 H 1.08994 * 109.46751 * 150.21171 * 1 2 3 30 30 H 1.08994 * 109.47122 * 270.02186 * 5 4 3 31 31 H 1.09001 * 109.46795 * 30.01778 * 5 4 3 32 32 H 1.08998 * 109.47269 * 150.02118 * 5 4 3 33 33 H 1.08998 * 109.46964 * 270.02112 * 7 6 4 34 34 H 1.08999 * 109.46936 * 30.02110 * 7 6 4 35 35 H 1.09000 * 109.47221 * 150.02354 * 7 6 4 36 36 H 1.09006 * 109.47277 * 330.00296 * 9 8 6 37 37 H 1.08993 * 109.47815 * 210.00092 * 9 8 6 38 38 H 0.96997 * 120.00091 * 345.00187 * 10 9 8 39 39 H 1.08999 * 109.47095 * 89.99844 * 15 14 11 40 40 H 1.08991 * 109.46942 * 210.00257 * 15 14 11 41 41 H 1.09009 * 109.46796 * 329.99896 * 15 14 11 42 42 H 1.09001 * 109.47294 * 179.97438 * 18 16 14 43 43 H 1.08997 * 109.47095 * 300.00351 * 18 16 14 44 44 H 1.09010 * 109.46956 * 60.00176 * 18 16 14 45 45 H 0.96998 * 120.00587 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0061 5 6 4.7899 1.5008 -0.0144 6 6 3.6143 -0.7153 -0.0034 7 6 4.8351 -1.5988 -0.0086 8 6 2.3272 -1.1329 0.0036 9 6 1.8600 -2.5656 0.0082 10 7 1.7154 -3.0277 1.3909 11 16 0.8736 -4.4162 1.7161 12 8 0.9435 -4.6078 3.1225 13 8 -0.3528 -4.3178 1.0052 14 7 1.7119 -5.6695 1.0313 15 6 1.4247 -6.0767 -0.3464 16 6 2.7406 -6.3710 1.8030 17 1 2.8115 -5.9313 2.7980 18 6 4.0887 -6.2426 1.0910 19 6 2.3728 -7.8275 1.9231 20 1 1.4634 -8.1939 1.4702 21 6 3.1972 -8.6923 2.6112 22 7 4.3043 -8.2462 3.1631 23 14 2.7408 -10.4976 2.7605 24 1 3.3185 -11.2503 1.6181 25 1 3.2788 -11.0404 4.0338 26 1 1.2624 -10.6371 2.7483 27 1 -0.3633 0.0037 1.0277 28 1 -0.3634 0.8880 -0.5170 29 1 -0.3632 -0.8918 -0.5105 30 1 5.0771 1.7137 -1.0440 31 1 4.5591 2.4344 0.4988 32 1 5.6122 0.9993 0.4959 33 1 5.1238 -1.8136 -1.0375 34 1 5.6540 -1.0900 0.4999 35 1 4.6105 -2.5320 0.5081 36 1 2.5910 -3.1879 -0.5083 37 1 0.8988 -2.6361 -0.5008 38 1 2.1127 -2.5204 2.1159 39 1 2.0616 -5.5166 -1.0311 40 1 1.6203 -7.1431 -0.4583 41 1 0.3784 -5.8733 -0.5747 42 1 4.8543 -6.7641 1.6655 43 1 4.0176 -6.6825 0.0963 44 1 4.3549 -5.1890 1.0041 45 1 4.8841 -8.8545 3.6475 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282980209.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:08 Heat of formation + Delta-G solvation = -4.123527 kcal Electronic energy + Delta-G solvation = -27610.027340 eV Core-core repulsion = 23791.180367 eV Total energy + Delta-G solvation = -3818.846973 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.151 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.50829 -36.61587 -36.13312 -35.44745 -35.14839 -34.09827 -32.55517 -31.82774 -29.67546 -29.08039 -27.86641 -25.96235 -25.46330 -25.15327 -24.10873 -20.78570 -19.87201 -19.59607 -18.70128 -17.30751 -16.84979 -16.66447 -16.15900 -15.92663 -15.47411 -14.98475 -14.47313 -14.20619 -13.94972 -13.64545 -13.42107 -13.34207 -13.21363 -13.07501 -12.93969 -12.70689 -12.50700 -12.20963 -12.03872 -11.99013 -11.92276 -11.77192 -11.45718 -11.32962 -11.30844 -11.19689 -10.89461 -10.80166 -10.58550 -10.43795 -10.21421 -10.03776 -9.26908 -9.16333 -9.16063 -8.49183 -8.44198 -7.93263 -6.06457 -4.12620 1.25886 1.72605 2.33496 2.58121 3.28882 3.36174 3.40576 3.68689 4.21818 4.28165 4.41475 4.47098 4.81476 4.84031 4.92674 5.04296 5.10385 5.14714 5.21849 5.25511 5.34718 5.43694 5.55590 5.65266 5.73763 5.76415 5.85940 6.02336 6.07653 6.12120 6.19677 6.40220 6.59538 6.68728 6.79282 6.86113 6.87814 7.05195 7.25876 7.53409 7.62556 7.65229 7.81351 8.06493 8.29263 8.89496 9.53022 10.99204 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.019029 B = 0.003582 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.093027 B = 7814.688187 C = 8697.619801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.093 3.907 3 N -0.303 5.303 4 N -0.377 5.377 5 C 0.102 3.898 6 C 0.106 3.894 7 C -0.099 4.099 8 C -0.247 4.247 9 C 0.204 3.796 10 N -1.129 6.129 11 S 2.779 3.221 12 O -0.976 6.976 13 O -0.998 6.998 14 N -0.989 5.989 15 C 0.095 3.905 16 C 0.268 3.732 17 H 0.058 0.942 18 C -0.145 4.145 19 C -0.520 4.520 20 H 0.063 0.937 21 C 0.064 3.936 22 N -0.890 5.890 23 Si 0.897 3.103 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.273 1.273 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.411 0.589 39 H 0.036 0.964 40 H 0.082 0.918 41 H 0.062 0.938 42 H 0.091 0.909 43 H 0.032 0.968 44 H 0.009 0.991 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.059 16.302 -9.086 18.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.073 4.073 3 N -0.125 5.125 4 N -0.158 5.158 5 C -0.039 4.039 6 C -0.023 4.023 7 C -0.157 4.157 8 C -0.260 4.260 9 C 0.077 3.923 10 N -0.888 5.888 11 S 2.788 3.212 12 O -0.960 6.960 13 O -0.981 6.981 14 N -0.832 5.832 15 C -0.051 4.051 16 C 0.165 3.835 17 H 0.076 0.924 18 C -0.205 4.205 19 C -0.559 4.559 20 H 0.081 0.919 21 C -0.139 4.139 22 N -0.529 5.529 23 Si 0.725 3.275 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.198 1.198 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.244 0.756 39 H 0.055 0.945 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.109 0.891 43 H 0.051 0.949 44 H 0.029 0.971 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.469 17.451 -8.646 19.531 hybrid contribution 0.605 -1.485 0.201 1.616 sum 2.073 15.966 -8.445 18.181 Atomic orbital electron populations 1.20245 0.86528 1.03426 1.03375 1.22250 0.96925 0.90110 0.98045 1.77329 0.86078 1.22434 1.26664 1.48313 1.05617 1.04151 1.57748 1.21813 0.83988 0.94881 1.03225 1.20966 0.97048 0.84474 0.99798 1.20572 0.92600 0.98871 1.03671 1.19639 0.91259 0.95838 1.19261 1.19297 1.00932 0.89587 0.82517 1.56295 1.74795 1.43934 1.13762 1.01923 0.73575 0.72547 0.73191 1.93611 1.86924 1.85134 1.30373 1.93515 1.42590 1.86751 1.75236 1.57655 1.54954 1.47500 1.23080 1.21324 0.99367 1.02649 0.81802 1.18705 0.82668 0.92222 0.89877 0.92411 1.22099 1.01136 0.97017 1.00209 1.21352 1.07487 0.92752 1.34339 0.91911 1.24895 0.94928 0.98922 0.95109 1.69852 1.12466 1.35244 1.35354 0.86512 0.78846 0.84701 0.77436 1.20692 1.21167 1.19824 0.90299 0.91001 0.89879 0.90851 0.89386 0.89496 0.89885 0.91063 0.88653 0.91458 0.90141 0.75648 0.94518 0.89914 0.91885 0.89061 0.94869 0.97150 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.26 36.01 0.37 -0.47 16 2 C 0.09 1.22 7.22 -82.40 -0.59 0.63 16 3 N -0.30 -4.11 12.58 33.67 0.42 -3.68 16 4 N -0.38 -4.27 4.01 -63.89 -0.26 -4.53 16 5 C 0.10 0.70 11.27 59.84 0.67 1.37 16 6 C 0.11 1.21 6.93 -82.26 -0.57 0.64 16 7 C -0.10 -0.87 9.72 36.01 0.35 -0.52 16 8 C -0.25 -3.14 5.49 -105.06 -0.58 -3.72 16 9 C 0.20 2.64 6.15 -5.19 -0.03 2.61 16 10 N -1.13 -16.89 6.05 -11.65 -0.07 -16.96 16 11 S 2.78 53.73 6.14 -107.50 -0.66 53.07 16 12 O -0.98 -22.79 16.70 -57.17 -0.95 -23.74 16 13 O -1.00 -20.23 16.21 -57.17 -0.93 -21.16 16 14 N -0.99 -19.91 3.12 -115.85 -0.36 -20.27 16 15 C 0.10 1.63 9.65 59.85 0.58 2.21 16 16 C 0.27 6.40 2.62 -69.08 -0.18 6.22 16 17 H 0.06 1.54 6.91 -51.93 -0.36 1.18 16 18 C -0.15 -3.15 8.97 37.16 0.33 -2.82 16 19 C -0.52 -13.77 7.99 -34.44 -0.28 -14.05 16 20 H 0.06 1.66 7.33 -52.49 -0.38 1.27 16 21 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 22 N -0.89 -24.43 11.32 55.43 0.63 -23.80 16 23 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 25 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.85 7.25 -51.93 -0.38 0.48 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.42 7.05 -51.93 -0.37 0.05 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.49 7.08 -51.93 -0.37 0.13 16 35 H 0.09 0.95 7.78 -51.93 -0.40 0.54 16 36 H 0.07 0.80 7.77 -51.93 -0.40 0.40 16 37 H 0.08 1.03 6.86 -51.93 -0.36 0.67 16 38 H 0.41 5.78 8.64 -34.47 -0.30 5.48 16 39 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 1.49 7.02 -51.93 -0.36 1.13 16 41 H 0.06 1.02 7.02 -51.92 -0.36 0.65 16 42 H 0.09 2.22 6.07 -51.93 -0.32 1.91 16 43 H 0.03 0.68 7.67 -51.93 -0.40 0.28 16 44 H 0.01 0.18 8.14 -51.92 -0.42 -0.24 16 45 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 378.33 15.07 5.70 5.70 Total: -1.00 -34.11 378.33 -8.37 -42.48 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.85 Total: 3.28 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -0.02 Total: -6.29 kcal Atomic # 7 Polarization: -69.60 SS G_CDS: 0.36 Total: -69.24 kcal Atomic # 8 Polarization: -43.02 SS G_CDS: -1.88 Total: -44.90 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 53.73 SS G_CDS: -0.66 Total: 53.07 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.11 -8.37 -42.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282980209.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.357 kcal (2) G-P(sol) polarization free energy of solvation -34.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds