Wall clock time and date at job start Tue Mar 31 2020 05:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30844 * 125.89671 * 2 1 4 4 N 1.40085 * 108.20437 * 180.26386 * 3 2 1 5 5 C 1.46496 * 126.03981 * 179.69960 * 4 3 2 6 6 C 1.34955 * 107.92319 * 359.71601 * 4 3 2 7 7 C 1.50699 * 126.12474 * 179.97438 * 6 4 3 8 8 C 1.35308 * 107.74461 * 0.02562 * 6 4 3 9 9 C 1.50701 * 126.03916 * 179.97438 * 8 6 4 10 10 N 1.46508 * 109.47193 * 89.99935 * 9 8 6 11 11 S 1.65595 * 119.99876 * 165.00215 * 10 9 8 12 12 O 1.42105 * 106.40149 * 178.54167 * 11 10 9 13 13 O 1.42098 * 106.40317 * 311.46040 * 11 10 9 14 14 N 1.65606 * 107.22013 * 65.00349 * 11 10 9 15 15 C 1.46504 * 119.99819 * 269.99910 * 14 11 10 16 16 C 1.46489 * 120.00129 * 89.99663 * 14 11 10 17 17 H 1.09006 * 109.47494 * 0.02562 * 16 14 11 18 18 C 1.53001 * 109.47367 * 239.99892 * 16 14 11 19 19 C 1.50706 * 109.47403 * 120.00178 * 16 14 11 20 20 H 1.07999 * 119.99433 * 359.97438 * 19 16 14 21 21 C 1.37871 * 120.00236 * 179.97438 * 19 16 14 22 22 N 1.31509 * 120.00376 * 0.02562 * 21 19 16 23 23 Si 1.86802 * 119.99846 * 179.97438 * 21 19 16 24 24 H 1.48508 * 109.47019 * 90.00103 * 23 21 19 25 25 H 1.48501 * 109.47000 * 210.00061 * 23 21 19 26 26 H 1.48501 * 109.47230 * 330.00284 * 23 21 19 27 27 H 1.09007 * 109.46672 * 270.20851 * 1 2 3 28 28 H 1.08994 * 109.47410 * 30.20851 * 1 2 3 29 29 H 1.08994 * 109.46751 * 150.21171 * 1 2 3 30 30 H 1.08994 * 109.47122 * 270.02186 * 5 4 3 31 31 H 1.09001 * 109.46795 * 30.01778 * 5 4 3 32 32 H 1.08998 * 109.47269 * 150.02118 * 5 4 3 33 33 H 1.08998 * 109.46964 * 270.02112 * 7 6 4 34 34 H 1.08999 * 109.46936 * 30.02110 * 7 6 4 35 35 H 1.09000 * 109.47221 * 150.02354 * 7 6 4 36 36 H 1.09006 * 109.47277 * 330.00296 * 9 8 6 37 37 H 1.08993 * 109.47815 * 210.00092 * 9 8 6 38 38 H 0.96997 * 120.00091 * 345.00187 * 10 9 8 39 39 H 1.08999 * 109.47095 * 89.99844 * 15 14 11 40 40 H 1.08991 * 109.46942 * 210.00257 * 15 14 11 41 41 H 1.09009 * 109.46796 * 329.99896 * 15 14 11 42 42 H 1.09001 * 109.47294 * 179.97438 * 18 16 14 43 43 H 1.08997 * 109.47095 * 300.00351 * 18 16 14 44 44 H 1.09010 * 109.46956 * 60.00176 * 18 16 14 45 45 H 0.96998 * 120.00587 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0061 5 6 4.7899 1.5008 -0.0144 6 6 3.6143 -0.7153 -0.0034 7 6 4.8351 -1.5988 -0.0086 8 6 2.3272 -1.1329 0.0036 9 6 1.8600 -2.5656 0.0082 10 7 1.7154 -3.0277 1.3909 11 16 0.8736 -4.4162 1.7161 12 8 0.9435 -4.6078 3.1225 13 8 -0.3528 -4.3178 1.0052 14 7 1.7119 -5.6695 1.0313 15 6 1.4247 -6.0767 -0.3464 16 6 2.7406 -6.3710 1.8030 17 1 2.8115 -5.9313 2.7980 18 6 4.0887 -6.2426 1.0910 19 6 2.3728 -7.8275 1.9231 20 1 1.4634 -8.1939 1.4702 21 6 3.1972 -8.6923 2.6112 22 7 4.3043 -8.2462 3.1631 23 14 2.7408 -10.4976 2.7605 24 1 3.3185 -11.2503 1.6181 25 1 3.2788 -11.0404 4.0338 26 1 1.2624 -10.6371 2.7483 27 1 -0.3633 0.0037 1.0277 28 1 -0.3634 0.8880 -0.5170 29 1 -0.3632 -0.8918 -0.5105 30 1 5.0771 1.7137 -1.0440 31 1 4.5591 2.4344 0.4988 32 1 5.6122 0.9993 0.4959 33 1 5.1238 -1.8136 -1.0375 34 1 5.6540 -1.0900 0.4999 35 1 4.6105 -2.5320 0.5081 36 1 2.5910 -3.1879 -0.5083 37 1 0.8988 -2.6361 -0.5008 38 1 2.1127 -2.5204 2.1159 39 1 2.0616 -5.5166 -1.0311 40 1 1.6203 -7.1431 -0.4583 41 1 0.3784 -5.8733 -0.5747 42 1 4.8543 -6.7641 1.6655 43 1 4.0176 -6.6825 0.0963 44 1 4.3549 -5.1890 1.0041 45 1 4.8841 -8.8545 3.6475 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282980209.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:07 Heat of formation + Delta-G solvation = -29.273315 kcal Electronic energy + Delta-G solvation = -27611.117917 eV Core-core repulsion = 23791.180367 eV Total energy + Delta-G solvation = -3819.937550 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.151 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.37307 -38.26235 -37.82080 -36.81267 -36.53748 -34.94553 -34.46578 -32.70091 -30.84477 -30.43657 -28.75147 -27.17735 -26.93453 -26.73376 -25.00740 -22.55230 -20.80315 -20.42832 -20.17768 -18.79241 -18.52361 -18.14865 -17.45824 -17.02668 -16.72726 -16.46549 -15.84375 -15.33603 -15.09141 -14.79087 -14.74902 -14.39103 -14.35147 -14.05547 -13.89179 -13.75833 -13.69672 -13.39538 -13.27685 -13.26107 -13.09446 -13.04341 -12.95415 -12.78701 -12.75762 -12.64820 -12.55581 -12.54745 -12.17118 -12.07249 -11.84619 -11.51617 -11.09643 -10.46624 -10.36809 -10.01279 -9.61326 -9.34731 -8.07766 -6.20405 -0.25523 0.85650 1.44187 1.46859 1.55670 1.58969 1.62380 2.23890 2.47148 2.74682 3.20759 3.48209 3.59583 3.70740 4.03524 4.14832 4.19864 4.31511 4.36626 4.40141 4.58545 4.61847 4.67462 4.75112 4.76903 4.84015 4.86842 4.94792 5.03977 5.07136 5.14250 5.15203 5.17156 5.23938 5.26625 5.35439 5.66785 5.70572 5.77241 5.94518 6.10664 6.13381 6.26865 6.36669 6.73733 6.87358 7.48150 8.96091 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.019029 B = 0.003582 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.093027 B = 7814.688187 C = 8697.619801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.080 3.920 3 N -0.333 5.333 4 N -0.377 5.377 5 C 0.092 3.908 6 C 0.111 3.889 7 C -0.098 4.098 8 C -0.269 4.269 9 C 0.203 3.797 10 N -1.114 6.114 11 S 2.796 3.204 12 O -1.022 7.022 13 O -1.008 7.008 14 N -0.995 5.995 15 C 0.089 3.911 16 C 0.273 3.727 17 H 0.023 0.977 18 C -0.132 4.132 19 C -0.538 4.538 20 H 0.056 0.944 21 C 0.019 3.981 22 N -0.912 5.912 23 Si 0.952 3.048 24 H -0.269 1.269 25 H -0.286 1.286 26 H -0.276 1.276 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.416 0.584 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.042 0.958 44 H 0.040 0.960 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.093 16.853 -10.608 20.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.086 4.086 3 N -0.156 5.156 4 N -0.159 5.159 5 C -0.048 4.048 6 C -0.019 4.019 7 C -0.156 4.156 8 C -0.282 4.282 9 C 0.077 3.923 10 N -0.876 5.876 11 S 2.805 3.195 12 O -1.006 7.006 13 O -0.991 6.991 14 N -0.837 5.837 15 C -0.056 4.056 16 C 0.169 3.831 17 H 0.041 0.959 18 C -0.191 4.191 19 C -0.578 4.578 20 H 0.075 0.925 21 C -0.181 4.181 22 N -0.552 5.552 23 Si 0.778 3.222 24 H -0.194 1.194 25 H -0.211 1.211 26 H -0.201 1.201 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.129 0.871 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.251 0.749 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.498 18.014 -10.189 20.846 hybrid contribution 0.306 -1.528 0.637 1.684 sum 2.804 16.486 -9.552 19.258 Atomic orbital electron populations 1.20300 0.85757 1.04107 1.03512 1.22568 0.97773 0.90303 0.97982 1.77268 0.87366 1.23131 1.27798 1.48676 1.05834 1.04699 1.56672 1.22183 0.83109 0.94800 1.04724 1.21373 0.97545 0.84875 0.98154 1.20671 0.92026 0.97979 1.04925 1.19659 0.91988 0.95366 1.21161 1.19454 1.01632 0.90277 0.80962 1.55916 1.74281 1.42202 1.15198 1.01195 0.73490 0.72973 0.71854 1.93546 1.87562 1.86081 1.33410 1.93495 1.43424 1.87106 1.75121 1.57510 1.54167 1.47989 1.23997 1.21524 1.00781 1.02530 0.80764 1.18388 0.84630 0.90875 0.89220 0.95937 1.21880 0.98810 0.98717 0.99708 1.21689 1.07277 0.94469 1.34331 0.92549 1.25585 0.95011 1.02489 0.95004 1.69966 1.13099 1.36308 1.35802 0.85651 0.78265 0.80634 0.77625 1.19447 1.21126 1.20108 0.90385 0.89988 0.89549 0.89249 0.89093 0.87124 0.88136 0.88996 0.89678 0.89893 0.89957 0.74948 0.90991 0.91090 0.91041 0.91793 0.93910 0.94114 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.65 10.26 71.24 0.73 -0.92 16 2 C 0.08 2.01 7.22 43.10 0.31 2.32 16 3 N -0.33 -8.67 12.58 -47.38 -0.60 -9.26 16 4 N -0.38 -7.79 4.01 -356.05 -1.43 -9.22 16 5 C 0.09 1.01 11.27 127.77 1.44 2.45 16 6 C 0.11 2.27 6.93 41.40 0.29 2.56 16 7 C -0.10 -1.40 9.72 71.24 0.69 -0.71 16 8 C -0.27 -6.40 5.49 -20.15 -0.11 -6.51 16 9 C 0.20 4.88 6.15 85.63 0.53 5.41 16 10 N -1.11 -32.17 6.05 -190.77 -1.15 -33.33 16 11 S 2.80 107.33 6.14 -56.49 -0.35 106.98 16 12 O -1.02 -48.71 16.70 -128.00 -2.14 -50.85 16 13 O -1.01 -40.20 16.21 -128.00 -2.07 -42.28 16 14 N -0.99 -39.29 3.12 -520.44 -1.62 -40.92 16 15 C 0.09 2.90 9.65 127.77 1.23 4.14 16 16 C 0.27 13.05 2.62 44.25 0.12 13.16 16 17 H 0.02 1.24 6.91 -2.38 -0.02 1.23 16 18 C -0.13 -5.56 8.97 71.98 0.65 -4.92 16 19 C -0.54 -28.68 7.99 25.60 0.20 -28.47 16 20 H 0.06 2.99 7.33 -2.91 -0.02 2.97 16 21 C 0.02 1.02 5.30 84.65 0.45 1.47 16 22 N -0.91 -50.43 11.32 21.44 0.24 -50.19 16 23 Si 0.95 42.87 29.54 68.60 2.03 44.90 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 26 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 27 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.09 1.71 7.25 -2.39 -0.02 1.69 16 30 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.11 0.68 7.05 -2.39 -0.02 0.67 16 33 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.09 0.93 7.08 -2.39 -0.02 0.91 16 35 H 0.08 1.44 7.78 -2.39 -0.02 1.42 16 36 H 0.08 1.74 7.77 -2.38 -0.02 1.72 16 37 H 0.08 1.96 6.86 -2.39 -0.02 1.94 16 38 H 0.42 11.42 8.64 -96.75 -0.84 10.58 16 39 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.07 2.47 7.02 -2.39 -0.02 2.46 16 41 H 0.07 2.19 7.02 -2.38 -0.02 2.17 16 42 H 0.06 3.09 6.07 -2.39 -0.01 3.07 16 43 H 0.04 1.68 7.67 -2.39 -0.02 1.66 16 44 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 45 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -73.75 378.33 -0.40 -74.15 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.17 Total: 20.05 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: 6.53 Total: -10.02 kcal Atomic # 7 Polarization: -138.36 SS G_CDS: -4.56 Total: -142.92 kcal Atomic # 8 Polarization: -88.92 SS G_CDS: -4.21 Total: -93.13 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 16 Polarization: 107.33 SS G_CDS: -0.35 Total: 106.98 kcal Total: -73.75 -0.40 -74.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282980209.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.875 kcal (2) G-P(sol) polarization free energy of solvation -73.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds