Wall clock time and date at job start Tue Mar 31 2020 05:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.46891 * 2 1 4 4 C 1.46499 * 119.99567 * 274.99559 * 3 2 1 5 5 C 1.50697 * 109.47394 * 275.00172 * 4 3 2 6 6 C 1.39873 * 126.04254 * 90.02290 * 5 4 3 7 7 N 1.30841 * 108.20528 * 179.97438 * 6 5 4 8 8 N 1.40088 * 108.20390 * 0.02562 * 7 6 5 9 9 C 1.46490 * 126.03603 * 179.97438 * 8 7 6 10 10 C 1.34955 * 107.92323 * 359.75657 * 8 7 6 11 11 S 1.65598 * 120.00361 * 94.99892 * 3 2 1 12 12 O 1.42100 * 106.40183 * 156.45698 * 11 3 2 13 13 O 1.42101 * 106.40217 * 23.53946 * 11 3 2 14 14 N 1.65597 * 107.21541 * 269.99978 * 11 3 2 15 15 C 1.46503 * 119.99956 * 269.99520 * 14 11 3 16 16 C 1.46497 * 120.00227 * 89.99985 * 14 11 3 17 17 H 1.09003 * 109.46733 * 0.02562 * 16 14 11 18 18 C 1.53000 * 109.47145 * 119.99787 * 16 14 11 19 19 C 1.50694 * 109.47115 * 239.99861 * 16 14 11 20 20 H 1.08000 * 120.00563 * 359.97438 * 19 16 14 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 16 14 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 16 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 16 24 24 H 1.48500 * 109.47353 * 269.99586 * 23 21 19 25 25 H 1.48501 * 109.47293 * 30.00037 * 23 21 19 26 26 H 1.48504 * 109.46680 * 149.99835 * 23 21 19 27 27 H 1.09001 * 109.47495 * 300.00368 * 1 2 3 28 28 H 1.08999 * 109.46972 * 60.00477 * 1 2 3 29 29 H 1.09003 * 109.46877 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47495 * 239.99632 * 2 1 3 31 31 H 1.09008 * 109.47143 * 119.99402 * 2 1 3 32 32 H 1.09000 * 109.47331 * 35.00399 * 4 3 2 33 33 H 1.08998 * 109.47007 * 155.00148 * 4 3 2 34 34 H 1.08004 * 125.89623 * 0.02562 * 6 5 4 35 35 H 1.08997 * 109.47358 * 89.97325 * 9 8 7 36 36 H 1.09001 * 109.47243 * 209.97892 * 9 8 7 37 37 H 1.09008 * 109.47374 * 329.97812 * 9 8 7 38 38 H 1.07996 * 126.11899 * 180.23487 * 10 8 7 39 39 H 1.08994 * 109.47665 * 270.00896 * 15 14 11 40 40 H 1.09008 * 109.46786 * 30.00504 * 15 14 11 41 41 H 1.08997 * 109.47360 * 149.99945 * 15 14 11 42 42 H 1.09000 * 109.47156 * 59.99824 * 18 16 14 43 43 H 1.08997 * 109.47359 * 180.02562 * 18 16 14 44 44 H 1.09007 * 109.47356 * 300.00099 * 18 16 14 45 45 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1582 2.1086 -1.2640 5 6 3.4947 1.7888 -1.8823 6 6 3.7604 0.7435 -2.7729 7 7 5.0294 0.7880 -3.0885 8 7 5.6123 1.8643 -2.4072 9 6 7.0184 2.2692 -2.4780 10 6 4.6487 2.4651 -1.6780 11 16 2.4121 2.1204 1.4286 12 8 3.3283 3.1572 1.1048 13 8 2.7095 1.0802 2.3499 14 7 1.0429 2.8643 1.9893 15 6 0.7515 4.2478 1.6053 16 6 0.1232 2.1391 2.8693 17 1 0.5040 1.1326 3.0425 18 6 0.0070 2.8768 4.2047 19 6 -1.2343 2.0584 2.2201 20 1 -1.3961 2.5032 1.2494 21 6 -2.2703 1.4176 2.8661 22 7 -2.0736 0.8764 4.0485 23 14 -3.9534 1.3182 2.0617 24 1 -4.7632 2.4972 2.4609 25 1 -3.7962 1.3026 0.5852 26 1 -4.6386 0.0757 2.4998 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.3617 1.8096 -1.9454 33 1 2.0921 3.1802 -1.0757 34 1 3.0419 0.0243 -3.1378 35 1 7.1493 2.9880 -3.2868 36 1 7.3125 2.7272 -1.5336 37 1 7.6397 1.3935 -2.6661 38 1 4.7764 3.3295 -1.0434 39 1 1.1983 4.9279 2.3303 40 1 1.1670 4.4458 0.6172 41 1 -0.3277 4.3988 1.5825 42 1 -0.3734 3.8835 4.0318 43 1 -0.6769 2.3370 4.8596 44 1 0.9890 2.9351 4.6742 45 1 -2.8025 0.4259 4.5030 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283013237.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:49 Heat of formation + Delta-G solvation = 9.399316 kcal Electronic energy + Delta-G solvation = -28380.251377 eV Core-core repulsion = 24561.990798 eV Total energy + Delta-G solvation = -3818.260579 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.151 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.13308 -36.71741 -36.48493 -36.10539 -35.17773 -33.27096 -32.62260 -31.28618 -29.24785 -28.99764 -27.26437 -25.50098 -25.25747 -24.74376 -22.14805 -21.00002 -20.67401 -20.24134 -18.23126 -17.29328 -16.82085 -16.57422 -16.32018 -15.89883 -15.37114 -14.83445 -14.50039 -14.28348 -13.88727 -13.55545 -13.41967 -13.08025 -12.97511 -12.85598 -12.74030 -12.68011 -12.15708 -12.01094 -11.91623 -11.73623 -11.61798 -11.42567 -11.33876 -11.19897 -10.98104 -10.89227 -10.84279 -10.51757 -10.44336 -10.28012 -10.16668 -10.00034 -9.38696 -9.26707 -8.71053 -8.49288 -8.40106 -7.91444 -6.11796 -4.18717 1.26978 1.93046 2.52745 2.79925 3.23084 3.31581 3.32624 3.62031 4.18788 4.33613 4.47167 4.93056 4.97134 4.98971 5.10860 5.16730 5.18342 5.23772 5.43190 5.57400 5.64167 5.79010 5.83690 5.90323 6.01993 6.12285 6.19357 6.27556 6.37108 6.41501 6.65621 6.66767 6.72463 6.86562 6.88641 7.02629 7.05687 7.12088 7.30548 7.52926 7.62720 7.71020 7.77585 8.04163 8.24881 8.83656 9.45693 10.92734 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.019733 B = 0.004198 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.605470 B = 6668.814991 C = 7350.336916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.122 3.878 3 N -0.999 5.999 4 C 0.208 3.792 5 C -0.258 4.258 6 C 0.062 3.938 7 N -0.307 5.307 8 N -0.382 5.382 9 C 0.102 3.898 10 C 0.077 3.923 11 S 2.781 3.219 12 O -1.000 7.000 13 O -0.983 6.983 14 N -0.992 5.992 15 C 0.108 3.892 16 C 0.268 3.732 17 H 0.058 0.942 18 C -0.146 4.146 19 C -0.521 4.521 20 H 0.066 0.934 21 C 0.067 3.933 22 N -0.884 5.884 23 Si 0.892 3.108 24 H -0.281 1.281 25 H -0.272 1.272 26 H -0.287 1.287 27 H 0.110 0.890 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.181 0.819 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.183 0.817 39 H 0.040 0.960 40 H 0.048 0.952 41 H 0.079 0.921 42 H 0.032 0.968 43 H 0.092 0.908 44 H 0.011 0.989 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.827 3.428 -11.282 15.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.003 4.003 3 N -0.837 5.837 4 C 0.081 3.919 5 C -0.271 4.271 6 C -0.124 4.124 7 N -0.129 5.129 8 N -0.164 5.164 9 C -0.039 4.039 10 C -0.070 4.070 11 S 2.791 3.209 12 O -0.984 6.984 13 O -0.967 6.967 14 N -0.834 5.834 15 C -0.038 4.038 16 C 0.165 3.835 17 H 0.076 0.924 18 C -0.205 4.205 19 C -0.561 4.561 20 H 0.084 0.916 21 C -0.136 4.136 22 N -0.521 5.521 23 Si 0.720 3.280 24 H -0.208 1.208 25 H -0.197 1.197 26 H -0.212 1.212 27 H 0.129 0.871 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.198 0.802 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.200 0.800 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.097 0.903 42 H 0.051 0.949 43 H 0.111 0.889 44 H 0.030 0.970 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.696 2.807 -11.402 16.573 hybrid contribution -1.997 0.300 -0.113 2.022 sum 9.699 3.107 -11.514 15.372 Atomic orbital electron populations 1.22622 0.95000 1.02211 1.05695 1.21213 0.95146 0.81289 1.02700 1.58094 1.81473 1.22872 1.21238 1.19265 0.91980 0.95592 0.85089 1.20555 0.97482 1.01501 1.07581 1.23771 0.93376 0.98286 0.97005 1.77300 1.09442 1.06450 1.19663 1.48486 1.08698 1.23388 1.35815 1.21827 0.77245 1.01481 1.03364 1.22698 0.88333 0.99606 0.96386 1.01852 0.73576 0.72781 0.72668 1.93474 1.61885 1.58068 1.84972 1.93555 1.83779 1.57763 1.61627 1.57789 1.42597 1.21401 1.61611 1.21163 1.02854 0.82141 0.97662 1.18719 0.87739 0.90999 0.86067 0.92428 1.22067 0.98836 0.99893 0.99728 1.21322 0.94365 1.36145 1.04225 0.91634 1.24916 0.98720 0.95189 0.94825 1.69884 1.32503 1.36118 1.13637 0.86599 0.84130 0.77521 0.79779 1.20751 1.19708 1.21230 0.87142 0.93287 0.92800 0.91603 0.89858 0.89820 0.90107 0.80196 0.90921 0.89433 0.89489 0.80041 0.94088 0.93355 0.90256 0.94897 0.88950 0.97039 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.31 10.24 37.16 0.38 -2.93 16 2 C 0.12 1.94 6.40 -4.04 -0.03 1.91 16 3 N -1.00 -16.26 2.82 -115.66 -0.33 -16.59 16 4 C 0.21 2.80 5.83 -5.20 -0.03 2.77 16 5 C -0.26 -3.52 5.68 -105.05 -0.60 -4.12 16 6 C 0.06 0.82 11.96 -17.36 -0.21 0.61 16 7 N -0.31 -4.38 12.58 30.63 0.39 -3.99 16 8 N -0.38 -4.87 4.01 -68.17 -0.27 -5.14 16 9 C 0.10 0.83 11.47 59.84 0.69 1.52 16 10 C 0.08 1.04 11.15 -17.22 -0.19 0.84 16 11 S 2.78 54.15 6.01 -107.50 -0.65 53.51 16 12 O -1.00 -19.13 15.43 -57.17 -0.88 -20.02 16 13 O -0.98 -22.65 15.25 -57.17 -0.87 -23.52 16 14 N -0.99 -19.89 3.12 -115.85 -0.36 -20.25 16 15 C 0.11 1.84 9.28 59.85 0.56 2.40 16 16 C 0.27 6.27 2.17 -69.09 -0.15 6.12 16 17 H 0.06 1.51 6.91 -51.93 -0.36 1.16 16 18 C -0.15 -3.40 8.97 37.16 0.33 -3.06 16 19 C -0.52 -12.48 5.40 -34.44 -0.19 -12.67 16 20 H 0.07 1.53 7.33 -52.49 -0.38 1.14 16 21 C 0.07 1.67 5.30 -17.82 -0.09 1.57 16 22 N -0.88 -23.35 11.32 55.43 0.63 -22.72 16 23 Si 0.89 19.59 29.54 -169.99 -5.02 14.57 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 26 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 27 H 0.11 2.26 4.63 -51.93 -0.24 2.02 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.87 8.11 -51.93 -0.42 0.45 16 31 H 0.08 1.47 6.92 -51.92 -0.36 1.11 16 32 H 0.08 0.97 8.11 -51.93 -0.42 0.55 16 33 H 0.08 1.04 7.26 -51.93 -0.38 0.66 16 34 H 0.18 1.87 8.06 -52.48 -0.42 1.45 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 38 H 0.18 2.29 7.57 -52.49 -0.40 1.90 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.70 7.44 -51.92 -0.39 0.31 16 41 H 0.08 1.37 7.02 -51.93 -0.36 1.00 16 42 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 43 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 44 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 373.64 15.07 5.63 5.63 Total: -1.00 -30.95 373.64 -8.21 -39.16 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -6.94 Total: 4.39 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 0.47 Total: -5.03 kcal Atomic # 7 Polarization: -68.74 SS G_CDS: 0.05 Total: -68.69 kcal Atomic # 8 Polarization: -41.78 SS G_CDS: -1.75 Total: -43.54 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Atomic # 16 Polarization: 54.15 SS G_CDS: -0.65 Total: 53.51 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.95 -8.21 -39.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283013237.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.558 kcal (2) G-P(sol) polarization free energy of solvation -30.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds