Wall clock time and date at job start Tue Mar 31 2020 06:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35920 * 117.00035 * 2 1 4 4 C 1.38176 * 120.21722 * 359.72525 * 3 2 1 5 5 C 1.38823 * 120.68197 * 179.76573 * 4 3 2 6 6 C 1.36722 * 120.58172 * 0.51363 * 5 4 3 7 7 C 1.39238 * 119.75918 * 359.75116 * 6 5 4 8 8 C 1.46909 * 135.44145 * 180.02562 * 7 6 5 9 9 C 1.47358 * 126.81560 * 359.95790 * 8 7 6 10 10 O 1.21615 * 119.99986 * 5.98936 * 9 8 7 11 11 N 1.34777 * 119.99758 * 185.99465 * 9 8 7 12 12 C 1.46966 * 120.59701 * 6.35297 * 11 9 8 13 13 C 1.53806 * 108.39675 * 124.76237 * 12 11 9 14 14 N 1.46967 * 108.58262 * 49.63760 * 13 12 11 15 15 C 1.36936 * 120.59163 * 124.66590 * 14 13 12 16 16 H 1.07999 * 119.99899 * 224.05704 * 15 14 13 17 17 C 1.38809 * 120.00022 * 44.05756 * 15 14 13 18 18 N 1.31614 * 120.00408 * 10.60680 * 17 15 14 19 19 Si 1.86799 * 120.00086 * 190.61116 * 17 15 14 20 20 H 1.48500 * 109.47567 * 89.99575 * 19 17 15 21 21 H 1.48495 * 109.47554 * 210.00109 * 19 17 15 22 22 H 1.48501 * 109.47026 * 329.99842 * 19 17 15 23 23 C 1.46958 * 118.81036 * 304.65166 * 14 13 12 24 24 C 1.46962 * 120.59068 * 186.64038 * 11 9 8 25 25 N 1.31608 * 106.36547 * 179.97438 * 8 7 6 26 26 N 1.28384 * 111.93864 * 359.97438 * 25 8 7 27 27 H 0.97004 * 124.38127 * 180.02562 * 26 25 8 28 28 C 1.37102 * 111.23444 * 0.02562 * 26 25 8 29 29 H 1.09003 * 109.47104 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47082 * 59.99789 * 1 2 3 31 31 H 1.09003 * 109.46792 * 299.99781 * 1 2 3 32 32 H 1.08001 * 119.65931 * 0.02562 * 4 3 2 33 33 H 1.08006 * 119.70855 * 180.26220 * 5 4 3 34 34 H 1.08007 * 120.11854 * 179.72438 * 6 5 4 35 35 H 1.08998 * 109.61135 * 244.55061 * 12 11 9 36 36 H 1.09007 * 109.60613 * 5.05602 * 12 11 9 37 37 H 1.09005 * 109.74393 * 289.85042 * 13 12 11 38 38 H 1.08993 * 109.53474 * 169.30782 * 13 12 11 39 39 H 0.96999 * 120.00579 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.61035 * 295.47142 * 23 14 13 41 41 H 1.09005 * 109.61066 * 174.96502 * 23 14 13 42 42 H 1.09004 * 109.61513 * 354.94290 * 24 11 9 43 43 H 1.09006 * 109.61190 * 115.45813 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2979 2.3727 -0.0057 5 6 1.9181 3.6147 -0.0009 6 6 3.2819 3.7112 -0.0009 7 6 4.0566 2.5543 -0.0006 8 6 5.4955 2.2580 -0.0001 9 6 6.5983 3.2354 -0.0006 10 8 6.3586 4.4227 0.1084 11 7 7.8726 2.8135 -0.1219 12 6 8.1700 1.4000 -0.3932 13 6 9.0426 1.3216 -1.6574 14 7 10.1599 2.2657 -1.5145 15 6 11.4545 1.8370 -1.6376 16 1 12.2036 2.1728 -0.9359 17 6 11.8041 0.9708 -2.6644 18 7 10.9523 0.7254 -3.6372 19 14 13.4837 0.1532 -2.6655 20 1 13.4061 -1.1384 -1.9368 21 1 13.9135 -0.0933 -4.0654 22 1 14.4670 1.0414 -1.9950 23 6 9.8627 3.6780 -1.2375 24 6 8.9898 3.7575 0.0211 25 7 5.6041 0.9464 0.0006 26 7 4.4568 0.3702 0.0011 27 1 4.3266 -0.5911 0.0020 28 6 3.4395 1.2893 0.0002 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 0.5138 0.8900 32 1 0.2195 2.3139 -0.0098 33 1 1.3180 4.5127 -0.0012 34 1 3.7566 4.6814 -0.0017 35 1 8.7068 0.9702 0.4524 36 1 7.2398 0.8550 -0.5545 37 1 8.4487 1.5875 -2.5319 38 1 9.4310 0.3095 -1.7699 39 1 11.1967 0.1203 -4.3549 40 1 9.3272 4.1116 -2.0821 41 1 10.7927 4.2220 -1.0726 42 1 8.6014 4.7698 0.1336 43 1 9.5838 3.4916 0.8956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291883885.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:07 Heat of formation + Delta-G solvation = 62.062592 kcal Electronic energy + Delta-G solvation = -28131.878808 eV Core-core repulsion = 24180.457929 eV Total energy + Delta-G solvation = -3951.420879 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.59441 -39.78507 -39.16241 -37.01056 -36.56868 -33.79685 -32.38108 -31.13467 -30.58616 -30.18008 -29.34946 -27.66546 -26.96127 -24.47108 -23.21220 -23.05043 -22.70283 -22.08546 -20.30644 -19.23770 -18.19574 -17.92812 -17.25718 -16.36081 -16.31779 -15.98338 -15.56803 -15.46624 -15.08208 -15.01052 -14.65468 -14.37866 -13.77167 -13.60704 -13.41155 -13.32022 -13.14819 -12.76619 -12.54092 -12.30397 -11.94273 -11.61944 -11.55607 -11.42078 -11.40827 -10.89240 -10.78453 -10.56889 -10.42701 -10.20563 -10.00028 -9.83788 -9.81961 -9.40951 -8.98068 -8.51420 -8.20360 -7.80181 -6.43515 -5.80893 -3.44909 0.73961 1.17290 1.90802 2.58831 2.82015 3.34424 3.37426 3.41084 3.42363 3.44566 3.75217 4.25859 4.40666 4.46322 4.57538 4.75770 4.77572 4.81422 4.98509 5.13505 5.20008 5.32658 5.35768 5.48565 5.58888 5.84762 5.94362 6.00066 6.08375 6.20878 6.26950 6.36011 6.38116 6.47638 6.51480 6.55832 6.79669 6.91684 6.99060 7.08635 7.27872 7.41372 7.75329 7.80635 7.97230 8.52751 8.54724 9.18760 9.75161 10.44035 11.23635 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.020853 B = 0.002902 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.422029 B = 9644.803664 C =10629.836274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.322 6.322 3 C 0.127 3.873 4 C -0.184 4.184 5 C -0.105 4.105 6 C -0.076 4.076 7 C -0.073 4.073 8 C 0.013 3.987 9 C 0.596 3.404 10 O -0.548 6.548 11 N -0.579 5.579 12 C 0.059 3.941 13 C 0.166 3.834 14 N -0.588 5.588 15 C -0.267 4.267 16 H 0.060 0.940 17 C 0.019 3.981 18 N -0.893 5.893 19 Si 0.902 3.098 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.276 1.276 23 C 0.132 3.868 24 C 0.096 3.904 25 N -0.191 5.191 26 N -0.409 5.409 27 H 0.449 0.551 28 C 0.047 3.953 29 H 0.100 0.900 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.141 0.859 35 H 0.062 0.938 36 H 0.112 0.888 37 H 0.025 0.975 38 H 0.078 0.922 39 H 0.255 0.745 40 H 0.024 0.976 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.811 -0.551 8.266 23.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.236 6.236 3 C 0.079 3.921 4 C -0.205 4.205 5 C -0.124 4.124 6 C -0.096 4.096 7 C -0.081 4.081 8 C -0.157 4.157 9 C 0.382 3.618 10 O -0.425 6.425 11 N -0.310 5.310 12 C -0.065 4.065 13 C 0.039 3.961 14 N -0.311 5.311 15 C -0.397 4.397 16 H 0.077 0.923 17 C -0.182 4.182 18 N -0.534 5.534 19 Si 0.731 3.269 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.202 1.202 23 C 0.005 3.995 24 C -0.028 4.028 25 N -0.021 5.021 26 N -0.128 5.128 27 H 0.294 0.706 28 C -0.067 4.067 29 H 0.118 0.882 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.159 0.841 35 H 0.080 0.920 36 H 0.129 0.871 37 H 0.043 0.957 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.042 0.958 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.008 -1.073 8.152 22.560 hybrid contribution -0.022 -0.583 -0.208 0.619 sum -21.030 -1.655 7.945 22.542 Atomic orbital electron populations 1.23062 0.77828 1.04048 1.01585 1.86012 1.21874 1.26532 1.89203 1.17734 0.87642 0.85305 1.01406 1.20976 0.99760 0.91446 1.08333 1.20559 0.94162 0.96941 1.00768 1.20317 0.92717 0.97724 0.98851 1.19223 0.91257 0.92459 1.05133 1.22888 0.92802 0.89486 1.10513 1.16730 0.81262 0.86182 0.77654 1.90734 1.83485 1.15655 1.52613 1.47882 1.04476 1.11163 1.67447 1.23443 1.02426 0.79851 1.00822 1.21118 0.88032 0.95681 0.91281 1.43817 1.02445 1.01157 1.83706 1.19028 0.85755 1.27162 1.07778 0.92290 1.25509 0.97348 1.00854 0.94492 1.69993 1.35634 1.36998 1.10822 0.86323 0.84100 0.79596 0.76856 1.21200 1.21634 1.20153 1.21340 0.96687 0.88275 0.93156 1.22312 0.87268 0.92873 1.00334 1.73039 1.06886 1.09168 1.13013 1.43264 1.00659 1.09580 1.59285 0.70618 1.18355 0.88458 0.90427 1.09463 0.88169 0.92393 0.92450 0.84762 0.85032 0.84084 0.92007 0.87140 0.95734 0.90390 0.93476 0.95807 0.91417 0.89817 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.05 10.51 -19.49 -0.20 -3.26 16 3 C 0.13 1.40 6.70 -39.11 -0.26 1.14 16 4 C -0.18 -1.72 9.03 -39.39 -0.36 -2.08 16 5 C -0.10 -1.06 9.97 -39.91 -0.40 -1.46 16 6 C -0.08 -1.00 9.86 -39.76 -0.39 -1.39 16 7 C -0.07 -1.11 6.34 -105.07 -0.67 -1.78 16 8 C 0.01 0.22 7.03 -80.74 -0.57 -0.34 16 9 C 0.60 11.50 7.68 -12.55 -0.10 11.40 16 10 O -0.55 -11.28 15.82 5.26 0.08 -11.20 16 11 N -0.58 -11.34 2.94 -173.50 -0.51 -11.85 16 12 C 0.06 1.16 6.36 -3.37 -0.02 1.14 16 13 C 0.17 3.93 5.48 -3.37 -0.02 3.91 16 14 N -0.59 -14.83 2.86 -171.77 -0.49 -15.32 16 15 C -0.27 -7.26 9.40 -15.06 -0.14 -7.41 16 16 H 0.06 1.58 7.85 -52.49 -0.41 1.17 16 17 C 0.02 0.53 5.01 -17.43 -0.09 0.44 16 18 N -0.89 -25.84 12.03 55.49 0.67 -25.17 16 19 Si 0.90 21.34 29.57 -169.99 -5.03 16.31 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 C 0.13 2.89 6.67 -3.60 -0.02 2.87 16 24 C 0.10 1.83 6.60 -3.60 -0.02 1.81 16 25 N -0.19 -2.96 8.56 34.47 0.30 -2.66 16 26 N -0.41 -5.20 6.85 32.41 0.22 -4.98 16 27 H 0.45 4.21 8.96 -190.49 -1.71 2.50 16 28 C 0.05 0.62 7.32 -84.07 -0.62 0.00 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.26 7.65 -51.93 -0.40 -0.14 16 31 H 0.06 0.24 7.68 -51.93 -0.40 -0.15 16 32 H 0.13 0.84 6.27 -52.49 -0.33 0.51 16 33 H 0.13 0.95 8.06 -52.48 -0.42 0.52 16 34 H 0.14 1.88 7.65 -52.48 -0.40 1.48 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.11 2.01 4.06 -80.57 -0.33 1.69 16 37 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 1.99 7.02 -51.93 -0.36 1.63 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 1.41 7.93 -51.93 -0.41 1.00 16 42 H 0.08 1.53 6.99 -51.93 -0.36 1.17 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 352.87 15.07 5.32 5.32 Total: -1.00 -33.17 352.87 -9.11 -42.28 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -6.78 Total: 1.11 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: -2.68 Total: 9.42 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: 0.18 Total: -59.99 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.12 Total: -14.46 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.17 -9.11 -42.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291883885.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.342 kcal (2) G-P(sol) polarization free energy of solvation -33.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds