Wall clock time and date at job start Tue Mar 31 2020 05:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47103 * 239.99953 * 2 1 3 5 5 H 1.07995 * 120.00167 * 239.72222 * 4 2 1 6 6 C 1.37879 * 119.99394 * 59.99920 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47487 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 N 1.46500 * 109.47204 * 120.00127 * 2 1 3 13 13 C 1.34775 * 120.00366 * 274.99782 * 12 2 1 14 14 O 1.21720 * 119.99284 * 0.02562 * 13 12 2 15 15 C 1.46285 * 120.00135 * 180.02562 * 13 12 2 16 16 N 1.29429 * 125.28420 * 359.69387 * 15 13 12 17 17 N 1.39330 * 113.99509 * 179.81156 * 16 15 13 18 18 C 1.39602 * 125.54361 * 180.21053 * 17 16 15 19 19 C 1.38976 * 120.08112 * 180.02562 * 18 17 16 20 20 C 1.38088 * 119.91845 * 179.81360 * 19 18 17 21 21 C 1.38298 * 120.07958 * 0.44600 * 20 19 18 22 22 C 1.38305 * 120.16275 * 359.78726 * 21 20 19 23 23 C 1.38088 * 120.07729 * 359.97438 * 22 21 20 24 24 C 1.47135 * 108.91773 * 0.45877 * 17 16 15 25 25 H 1.09001 * 110.58162 * 241.20668 * 24 17 16 26 26 C 1.50697 * 110.58438 * 118.29867 * 24 17 16 27 27 N 1.34782 * 119.99773 * 165.75101 * 26 24 17 28 28 O 1.21278 * 120.00105 * 345.75591 * 26 24 17 29 29 C 1.51201 * 125.27744 * 180.02562 * 15 13 12 30 30 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47230 * 299.99144 * 1 2 3 32 32 H 1.09001 * 109.47375 * 59.99983 * 1 2 3 33 33 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 34 34 H 0.97001 * 119.99882 * 94.99976 * 12 2 1 35 35 H 1.08000 * 120.03929 * 359.97438 * 19 18 17 36 36 H 1.07994 * 119.95801 * 180.21171 * 20 19 18 37 37 H 1.07998 * 119.92222 * 179.76669 * 21 20 19 38 38 H 1.07998 * 119.96427 * 179.97438 * 22 21 20 39 39 H 1.07998 * 120.03843 * 179.97438 * 23 22 21 40 40 H 0.97002 * 120.00124 * 0.02562 * 27 26 24 41 41 H 0.97005 * 119.99766 * 180.02562 * 27 26 24 42 42 H 1.09006 * 110.52472 * 298.62275 * 29 15 13 43 43 H 1.08997 * 110.52845 * 61.23793 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6569 -1.5859 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9434 0.8303 -2.6033 8 14 2.3212 -1.1203 -4.0079 9 1 3.1463 -2.2869 -3.6039 10 1 1.1659 -1.5866 -4.8161 11 1 3.1465 -0.1872 -4.8165 12 7 2.0183 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8572 1.1625 2.4119 15 6 2.6353 -0.7079 3.5514 16 7 2.9665 -1.9577 3.6101 17 7 3.4053 -2.3691 4.8669 18 6 3.8237 -3.6591 5.1983 19 6 4.2399 -3.9453 6.4930 20 6 4.6495 -5.2234 6.8181 21 6 4.6545 -6.2157 5.8548 22 6 4.2455 -5.9333 4.5641 23 6 3.8300 -4.6588 4.2330 24 6 3.3504 -1.2244 5.7897 25 1 4.3444 -0.9921 6.1718 26 6 2.3972 -1.5028 6.9232 27 7 2.4097 -0.7216 8.0215 28 8 1.6188 -2.4297 6.8472 29 6 2.8246 -0.0728 4.9104 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8900 33 1 0.7094 1.1619 -3.4843 34 1 2.2490 -1.6318 1.1525 35 1 4.2406 -3.1697 7.2446 36 1 4.9698 -5.4474 7.8248 37 1 4.9789 -7.2135 6.1109 38 1 4.2511 -6.7106 3.8143 39 1 3.5112 -4.4389 3.2248 40 1 3.0321 0.0200 8.0821 41 1 1.7964 -0.9011 8.7513 42 1 3.5573 0.7325 4.8572 43 1 1.8749 0.3006 5.2934 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299437188.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:21 Heat of formation + Delta-G solvation = 14.204062 kcal Electronic energy + Delta-G solvation = -27774.074645 eV Core-core repulsion = 23820.578464 eV Total energy + Delta-G solvation = -3953.496181 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.20461 -39.17943 -39.02312 -37.97167 -34.89625 -34.16123 -33.38858 -32.42118 -31.44987 -30.70449 -29.37525 -28.52361 -25.28490 -24.82249 -24.11402 -22.62969 -21.85892 -20.61557 -20.42928 -19.22479 -18.40856 -17.74995 -17.40466 -16.93478 -16.21968 -15.90128 -15.48093 -15.28102 -15.01321 -14.82594 -14.46626 -14.23697 -14.06805 -13.72275 -13.46466 -13.35085 -13.20319 -12.90467 -12.50745 -12.42412 -12.03659 -11.70764 -11.63302 -11.22658 -11.11021 -10.98161 -10.79153 -10.65443 -10.44095 -10.32801 -10.24836 -10.10364 -9.69215 -9.48133 -9.07000 -9.02171 -8.58203 -8.04858 -7.51828 -6.13900 -4.22895 1.02103 1.33731 1.72251 2.02316 2.24683 3.04386 3.24681 3.32561 3.35914 3.64496 3.70470 3.81493 3.83696 4.18607 4.35164 4.44591 4.55910 4.82469 4.86294 5.01825 5.08966 5.19192 5.28195 5.33928 5.41876 5.48724 5.54810 5.83108 5.99296 6.30869 6.34770 6.37963 6.50735 6.66043 6.79779 6.84376 6.92944 7.09951 7.13945 7.32051 7.44881 7.59083 7.68820 7.83090 7.87615 8.10776 8.54677 8.70683 8.95164 9.44151 10.92261 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.013623 B = 0.003192 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.920809 B = 8770.007417 C =10443.513655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.263 3.737 3 H 0.053 0.947 4 C -0.534 4.534 5 H 0.064 0.936 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.682 5.682 13 C 0.578 3.422 14 O -0.541 6.541 15 C 0.044 3.956 16 N -0.179 5.179 17 N -0.448 5.448 18 C 0.237 3.763 19 C -0.170 4.170 20 C -0.082 4.082 21 C -0.164 4.164 22 C -0.082 4.082 23 C -0.155 4.155 24 C 0.090 3.910 25 H 0.114 0.886 26 C 0.507 3.493 27 N -0.851 5.851 28 O -0.513 6.513 29 C -0.098 4.098 30 H 0.028 0.972 31 H 0.016 0.984 32 H 0.093 0.907 33 H 0.264 0.736 34 H 0.398 0.602 35 H 0.112 0.888 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.134 0.866 40 H 0.403 0.597 41 H 0.405 0.595 42 H 0.119 0.881 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.040 -6.414 21.659 23.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.162 3.838 3 H 0.071 0.929 4 C -0.572 4.572 5 H 0.082 0.918 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.209 1.209 12 N -0.329 5.329 13 C 0.359 3.641 14 O -0.417 6.417 15 C -0.152 4.152 16 N 0.011 4.989 17 N -0.248 5.248 18 C 0.140 3.860 19 C -0.192 4.192 20 C -0.101 4.101 21 C -0.184 4.184 22 C -0.100 4.100 23 C -0.176 4.176 24 C -0.019 4.019 25 H 0.132 0.868 26 C 0.288 3.712 27 N -0.417 5.417 28 O -0.387 6.387 29 C -0.139 4.139 30 H 0.048 0.952 31 H 0.035 0.965 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.231 0.769 35 H 0.130 0.870 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.144 0.856 39 H 0.152 0.848 40 H 0.232 0.768 41 H 0.237 0.763 42 H 0.137 0.863 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.391 -6.979 20.780 23.134 hybrid contribution 0.340 0.130 0.205 0.417 sum 7.731 -6.849 20.985 23.389 Atomic orbital electron populations 1.22094 0.98056 0.99446 1.01110 1.18899 0.91304 0.94083 0.79548 0.92891 1.21243 1.32372 1.13485 0.90119 0.91806 1.24875 0.94763 0.94925 0.99066 1.69906 1.35905 1.22414 1.23863 0.86371 0.78629 0.79566 0.82431 1.19646 1.20841 1.20866 1.46544 1.62514 1.14108 1.09757 1.16609 0.79623 0.86220 0.81649 1.90832 1.51880 1.14654 1.84347 1.25069 1.01983 0.91090 0.97020 1.74885 1.05983 1.14561 1.03430 1.47926 1.65998 1.07241 1.03647 1.17222 0.94259 0.80920 0.93565 1.20452 1.06771 0.98035 0.93970 1.20788 0.98134 0.92019 0.99130 1.20995 1.04380 0.99359 0.93631 1.20983 0.96809 0.95755 0.96485 1.20822 1.04794 0.92205 0.99785 1.22267 0.99977 0.88164 0.91517 0.86801 1.20753 0.84468 0.82397 0.83548 1.43801 1.42974 1.34613 1.20296 1.90831 1.38882 1.29347 1.79610 1.21884 1.04620 0.97085 0.90313 0.95237 0.96481 0.88875 0.92577 0.76852 0.87021 0.85986 0.86202 0.85633 0.84772 0.76824 0.76345 0.86301 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.26 37.16 0.34 -3.34 16 2 C 0.26 6.64 2.56 -69.08 -0.18 6.46 16 3 H 0.05 1.51 7.58 -51.93 -0.39 1.11 16 4 C -0.53 -14.12 8.73 -34.44 -0.30 -14.42 16 5 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.60 11.32 55.43 0.63 -23.97 16 8 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 9 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 N -0.68 -14.60 5.06 -56.37 -0.29 -14.89 16 13 C 0.58 11.62 7.74 -13.03 -0.10 11.52 16 14 O -0.54 -12.29 16.58 5.17 0.09 -12.21 16 15 C 0.04 0.71 7.27 -80.13 -0.58 0.13 16 16 N -0.18 -2.90 10.89 34.92 0.38 -2.52 16 17 N -0.45 -6.40 3.53 -52.29 -0.18 -6.58 16 18 C 0.24 3.32 6.21 -83.78 -0.52 2.80 16 19 C -0.17 -2.03 8.70 -39.36 -0.34 -2.37 16 20 C -0.08 -0.85 10.04 -39.61 -0.40 -1.25 16 21 C -0.16 -1.68 10.04 -39.53 -0.40 -2.08 16 22 C -0.08 -0.93 10.04 -39.61 -0.40 -1.33 16 23 C -0.15 -2.12 9.64 -39.37 -0.38 -2.50 16 24 C 0.09 0.98 3.21 -68.14 -0.22 0.76 16 25 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 26 C 0.51 5.55 5.63 -10.98 -0.06 5.49 16 27 N -0.85 -5.03 8.87 31.22 0.28 -4.76 16 28 O -0.51 -8.17 16.55 5.56 0.09 -8.08 16 29 C -0.10 -1.15 6.38 -27.05 -0.17 -1.33 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 33 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.40 7.89 8.16 -40.82 -0.33 7.55 16 35 H 0.11 1.17 6.40 -52.49 -0.34 0.83 16 36 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.13 1.91 7.66 -52.49 -0.40 1.51 16 40 H 0.40 1.04 8.83 -40.82 -0.36 0.68 16 41 H 0.41 2.05 8.93 -40.82 -0.36 1.68 16 42 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.11 1.23 7.73 -51.93 -0.40 0.83 16 LS Contribution 368.56 15.07 5.55 5.55 Total: -1.00 -34.39 368.56 -7.68 -42.07 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -5.41 Total: 9.54 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -3.80 Total: 0.23 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: 0.81 Total: -52.72 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: 0.18 Total: -20.28 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.39 -7.68 -42.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299437188.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.274 kcal (2) G-P(sol) polarization free energy of solvation -34.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds