Wall clock time and date at job start Tue Mar 31 2020 05:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47103 * 239.99953 * 2 1 3 5 5 H 1.07995 * 120.00167 * 239.72222 * 4 2 1 6 6 C 1.37879 * 119.99394 * 59.99920 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47487 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 N 1.46500 * 109.47204 * 120.00127 * 2 1 3 13 13 C 1.34775 * 120.00366 * 274.99782 * 12 2 1 14 14 O 1.21720 * 119.99284 * 0.02562 * 13 12 2 15 15 C 1.46285 * 120.00135 * 180.02562 * 13 12 2 16 16 N 1.29429 * 125.28420 * 359.69387 * 15 13 12 17 17 N 1.39330 * 113.99509 * 179.81156 * 16 15 13 18 18 C 1.39602 * 125.54361 * 180.21053 * 17 16 15 19 19 C 1.38976 * 120.08112 * 180.02562 * 18 17 16 20 20 C 1.38088 * 119.91845 * 179.81360 * 19 18 17 21 21 C 1.38298 * 120.07958 * 0.44600 * 20 19 18 22 22 C 1.38305 * 120.16275 * 359.78726 * 21 20 19 23 23 C 1.38088 * 120.07729 * 359.97438 * 22 21 20 24 24 C 1.47135 * 108.91773 * 0.45877 * 17 16 15 25 25 H 1.09001 * 110.58162 * 241.20668 * 24 17 16 26 26 C 1.50697 * 110.58438 * 118.29867 * 24 17 16 27 27 N 1.34782 * 119.99773 * 165.75101 * 26 24 17 28 28 O 1.21278 * 120.00105 * 345.75591 * 26 24 17 29 29 C 1.51201 * 125.27744 * 180.02562 * 15 13 12 30 30 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47230 * 299.99144 * 1 2 3 32 32 H 1.09001 * 109.47375 * 59.99983 * 1 2 3 33 33 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 34 34 H 0.97001 * 119.99882 * 94.99976 * 12 2 1 35 35 H 1.08000 * 120.03929 * 359.97438 * 19 18 17 36 36 H 1.07994 * 119.95801 * 180.21171 * 20 19 18 37 37 H 1.07998 * 119.92222 * 179.76669 * 21 20 19 38 38 H 1.07998 * 119.96427 * 179.97438 * 22 21 20 39 39 H 1.07998 * 120.03843 * 179.97438 * 23 22 21 40 40 H 0.97002 * 120.00124 * 0.02562 * 27 26 24 41 41 H 0.97005 * 119.99766 * 180.02562 * 27 26 24 42 42 H 1.09006 * 110.52472 * 298.62275 * 29 15 13 43 43 H 1.08997 * 110.52845 * 61.23793 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6569 -1.5859 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9434 0.8303 -2.6033 8 14 2.3212 -1.1203 -4.0079 9 1 3.1463 -2.2869 -3.6039 10 1 1.1659 -1.5866 -4.8161 11 1 3.1465 -0.1872 -4.8165 12 7 2.0183 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8572 1.1625 2.4119 15 6 2.6353 -0.7079 3.5514 16 7 2.9665 -1.9577 3.6101 17 7 3.4053 -2.3691 4.8669 18 6 3.8237 -3.6591 5.1983 19 6 4.2399 -3.9453 6.4930 20 6 4.6495 -5.2234 6.8181 21 6 4.6545 -6.2157 5.8548 22 6 4.2455 -5.9333 4.5641 23 6 3.8300 -4.6588 4.2330 24 6 3.3504 -1.2244 5.7897 25 1 4.3444 -0.9921 6.1718 26 6 2.3972 -1.5028 6.9232 27 7 2.4097 -0.7216 8.0215 28 8 1.6188 -2.4297 6.8472 29 6 2.8246 -0.0728 4.9104 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8900 33 1 0.7094 1.1619 -3.4843 34 1 2.2490 -1.6318 1.1525 35 1 4.2406 -3.1697 7.2446 36 1 4.9698 -5.4474 7.8248 37 1 4.9789 -7.2135 6.1109 38 1 4.2511 -6.7106 3.8143 39 1 3.5112 -4.4389 3.2248 40 1 3.0321 0.0200 8.0821 41 1 1.7964 -0.9011 8.7513 42 1 3.5573 0.7325 4.8572 43 1 1.8749 0.3006 5.2934 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299437188.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:20 Heat of formation + Delta-G solvation = -12.289663 kcal Electronic energy + Delta-G solvation = -27775.223499 eV Core-core repulsion = 23820.578464 eV Total energy + Delta-G solvation = -3954.645035 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.21276 -40.62711 -39.90323 -39.14756 -36.79171 -34.92814 -34.62290 -34.12785 -32.40766 -31.67065 -30.94943 -29.78891 -27.36263 -25.80073 -25.42747 -23.56371 -22.98363 -22.12469 -21.48231 -20.78101 -19.34694 -18.77911 -18.58839 -17.96777 -17.50064 -17.28365 -16.92842 -16.52306 -16.15968 -16.00106 -15.85947 -15.50051 -15.16023 -14.97732 -14.57568 -14.44296 -14.33842 -14.24853 -13.98077 -13.74282 -13.36366 -13.02899 -12.99996 -12.86698 -12.75912 -12.46370 -12.30042 -12.14488 -12.12475 -11.73853 -11.41785 -11.18272 -11.10369 -10.78652 -10.64982 -10.61689 -9.90008 -9.88649 -8.51232 -8.19005 -6.35909 -0.15733 0.45884 0.71077 1.04085 1.37617 1.44337 1.45608 1.57730 2.10140 2.19907 2.37375 2.50038 2.83054 2.93378 3.11621 3.24505 3.57862 3.76943 3.88336 3.97001 4.03102 4.30865 4.37889 4.46441 4.54187 4.56351 4.65680 4.71821 4.82250 4.90329 5.05211 5.11348 5.35915 5.37618 5.48899 5.53618 5.64129 5.64792 5.74717 5.81671 5.83517 6.05980 6.16322 6.33109 6.42564 6.68622 6.81313 7.18384 7.19942 7.38258 8.87621 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.013623 B = 0.003192 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.920809 B = 8770.007417 C =10443.513655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.270 3.730 3 H 0.013 0.987 4 C -0.549 4.549 5 H 0.069 0.931 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.971 3.029 9 H -0.264 1.264 10 H -0.278 1.278 11 H -0.280 1.280 12 N -0.686 5.686 13 C 0.581 3.419 14 O -0.571 6.571 15 C 0.021 3.979 16 N -0.190 5.190 17 N -0.449 5.449 18 C 0.206 3.794 19 C -0.171 4.171 20 C -0.082 4.082 21 C -0.160 4.160 22 C -0.088 4.088 23 C -0.182 4.182 24 C 0.090 3.910 25 H 0.156 0.844 26 C 0.508 3.492 27 N -0.822 5.822 28 O -0.570 6.570 29 C -0.092 4.092 30 H 0.035 0.965 31 H 0.017 0.983 32 H 0.073 0.927 33 H 0.267 0.733 34 H 0.405 0.595 35 H 0.126 0.874 36 H 0.155 0.845 37 H 0.150 0.850 38 H 0.143 0.857 39 H 0.115 0.885 40 H 0.423 0.577 41 H 0.413 0.587 42 H 0.146 0.854 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.840 -7.854 23.917 27.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.168 3.832 3 H 0.031 0.969 4 C -0.588 4.588 5 H 0.087 0.913 6 C -0.182 4.182 7 N -0.552 5.552 8 Si 0.796 3.204 9 H -0.188 1.188 10 H -0.203 1.203 11 H -0.206 1.206 12 N -0.334 5.334 13 C 0.365 3.635 14 O -0.449 6.449 15 C -0.173 4.173 16 N -0.001 5.001 17 N -0.251 5.251 18 C 0.111 3.889 19 C -0.194 4.194 20 C -0.100 4.100 21 C -0.179 4.179 22 C -0.106 4.106 23 C -0.203 4.203 24 C -0.018 4.018 25 H 0.173 0.827 26 C 0.290 3.710 27 N -0.388 5.388 28 O -0.448 6.448 29 C -0.132 4.132 30 H 0.055 0.945 31 H 0.036 0.964 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.240 0.760 35 H 0.144 0.856 36 H 0.172 0.828 37 H 0.168 0.832 38 H 0.161 0.839 39 H 0.133 0.867 40 H 0.255 0.745 41 H 0.246 0.754 42 H 0.164 0.836 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 9.226 -8.390 23.108 26.259 hybrid contribution -0.173 0.493 -0.357 0.633 sum 9.053 -7.897 22.751 25.728 Atomic orbital electron populations 1.21927 0.97977 0.99466 1.00100 1.18508 0.91322 0.92342 0.81058 0.96864 1.21525 1.32646 1.13748 0.90838 0.91319 1.25736 0.94797 0.95547 1.02089 1.70032 1.36782 1.23674 1.24693 0.85306 0.78140 0.78514 0.78441 1.18802 1.20336 1.20574 1.46318 1.63246 1.14343 1.09510 1.16964 0.78482 0.85880 0.82171 1.90799 1.53021 1.16054 1.85068 1.24503 1.03771 0.91741 0.97265 1.74758 1.05061 1.14648 1.05641 1.48048 1.65400 1.08269 1.03341 1.17571 0.95753 0.80910 0.94661 1.20711 1.06181 0.99258 0.93227 1.21240 0.96894 0.91248 1.00664 1.21401 1.02859 1.00787 0.92865 1.21261 0.96358 0.95213 0.97816 1.20906 1.06462 0.93670 0.99303 1.22582 1.02014 0.86334 0.90868 0.82672 1.20775 0.83725 0.82121 0.84373 1.43576 1.42661 1.33805 1.18787 1.90816 1.41098 1.32037 1.80845 1.21976 1.05660 0.97911 0.87648 0.94539 0.96380 0.90869 0.92370 0.76023 0.85585 0.82778 0.83222 0.83941 0.86659 0.74486 0.75398 0.83587 0.87258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.01 9.26 71.98 0.67 -6.34 16 2 C 0.27 14.24 2.56 44.25 0.11 14.35 16 3 H 0.01 0.81 7.58 -2.39 -0.02 0.79 16 4 C -0.55 -29.72 8.73 25.60 0.22 -29.50 16 5 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 6 C 0.02 1.01 5.30 84.66 0.45 1.46 16 7 N -0.91 -52.10 11.32 21.45 0.24 -51.85 16 8 Si 0.97 42.52 29.54 68.60 2.03 44.55 16 9 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 10 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 12 N -0.69 -30.58 5.06 -450.45 -2.28 -32.86 16 13 C 0.58 24.19 7.74 86.34 0.67 24.86 16 14 O -0.57 -26.90 16.58 -4.41 -0.07 -26.97 16 15 C 0.02 0.70 7.27 45.17 0.33 1.02 16 16 N -0.19 -6.25 10.89 -43.42 -0.47 -6.72 16 17 N -0.45 -12.54 3.53 -319.35 -1.13 -13.67 16 18 C 0.21 5.65 6.21 38.26 0.24 5.89 16 19 C -0.17 -3.72 8.70 22.41 0.20 -3.52 16 20 C -0.08 -1.44 10.04 22.25 0.22 -1.22 16 21 C -0.16 -2.82 10.04 22.30 0.22 -2.60 16 22 C -0.09 -1.90 10.04 22.25 0.22 -1.67 16 23 C -0.18 -5.03 9.64 22.41 0.22 -4.82 16 24 C 0.09 1.77 3.21 44.51 0.14 1.91 16 25 H 0.16 1.71 8.14 -2.39 -0.02 1.69 16 26 C 0.51 10.12 5.63 87.66 0.49 10.62 16 27 N -0.82 -7.25 8.87 -173.53 -1.54 -8.79 16 28 O -0.57 -17.73 16.55 -3.02 -0.05 -17.78 16 29 C -0.09 -2.03 6.38 30.39 0.19 -1.83 16 30 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 4.06 6.07 -2.39 -0.01 4.05 16 33 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 34 H 0.40 16.72 8.16 -92.71 -0.76 15.96 16 35 H 0.13 2.26 6.40 -2.91 -0.02 2.24 16 36 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 37 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 38 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 39 H 0.12 3.49 7.66 -2.91 -0.02 3.47 16 40 H 0.42 0.54 8.83 -92.71 -0.82 -0.28 16 41 H 0.41 3.02 8.93 -92.70 -0.83 2.19 16 42 H 0.15 2.35 8.14 -2.38 -0.02 2.33 16 43 H 0.11 2.36 7.73 -2.39 -0.02 2.34 16 Total: -1.00 -78.20 368.56 0.01 -78.19 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: -1.32 Total: 27.28 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 4.60 Total: 8.62 kcal Atomic # 7 Polarization: -108.72 SS G_CDS: -5.18 Total: -113.89 kcal Atomic # 8 Polarization: -44.63 SS G_CDS: -0.12 Total: -44.75 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -78.20 0.01 -78.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299437188.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.904 kcal (2) G-P(sol) polarization free energy of solvation -78.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds