Wall clock time and date at job start Tue Mar 31 2020 05:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47182 * 2 1 4 4 C 1.50707 * 109.46916 * 240.00048 * 2 1 3 5 5 H 1.08001 * 119.99864 * 239.99775 * 4 2 1 6 6 C 1.37877 * 119.99666 * 60.00096 * 4 2 1 7 7 N 1.31508 * 120.00251 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99524 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47019 * 89.99983 * 8 6 4 10 10 H 1.48504 * 109.47108 * 209.99596 * 8 6 4 11 11 H 1.48495 * 109.47244 * 330.00045 * 8 6 4 12 12 N 1.46502 * 109.47435 * 120.00260 * 2 1 3 13 13 C 1.34777 * 119.99628 * 275.00120 * 12 2 1 14 14 O 1.21721 * 120.00182 * 359.97438 * 13 12 2 15 15 C 1.46293 * 119.99558 * 179.97438 * 13 12 2 16 16 N 1.29425 * 125.28522 * 359.97438 * 15 13 12 17 17 N 1.39334 * 113.99729 * 180.02562 * 16 15 13 18 18 C 1.39604 * 125.54356 * 180.02562 * 17 16 15 19 19 C 1.38965 * 120.07878 * 179.70234 * 18 17 16 20 20 C 1.38088 * 119.91858 * 179.71976 * 19 18 17 21 21 C 1.38304 * 120.07532 * 0.55032 * 20 19 18 22 22 C 1.38298 * 120.16425 * 359.72429 * 21 20 19 23 23 C 1.38080 * 120.07794 * 359.97438 * 22 21 20 24 24 C 1.47132 * 108.91661 * 359.97438 * 17 16 15 25 25 H 1.09002 * 110.58521 * 118.54554 * 24 17 16 26 26 C 1.50699 * 110.71567 * 241.39257 * 24 17 16 27 27 N 1.34775 * 120.00382 * 196.41403 * 26 24 17 28 28 O 1.21287 * 120.00115 * 16.41538 * 26 24 17 29 29 C 1.51202 * 125.27679 * 179.97438 * 15 13 12 30 30 H 1.08994 * 109.47061 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47102 * 299.99962 * 1 2 3 32 32 H 1.08996 * 109.47022 * 59.99878 * 1 2 3 33 33 H 0.96999 * 119.99783 * 180.02562 * 7 6 4 34 34 H 0.96999 * 120.00062 * 94.99006 * 12 2 1 35 35 H 1.08004 * 120.04274 * 359.97421 * 19 18 17 36 36 H 1.07993 * 119.96341 * 180.25081 * 20 19 18 37 37 H 1.08001 * 119.91385 * 179.74736 * 21 20 19 38 38 H 1.07995 * 119.96130 * 180.02562 * 22 21 20 39 39 H 1.08004 * 120.04316 * 180.02562 * 23 22 21 40 40 H 0.97001 * 119.99656 * 0.02562 * 27 26 24 41 41 H 0.96995 * 120.00054 * 179.97438 * 27 26 24 42 42 H 1.08999 * 110.52749 * 61.37773 * 29 15 13 43 43 H 1.08999 * 110.52184 * 298.62055 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3425 -2.1617 -4.4119 10 1 2.4864 -0.1414 -5.1124 11 1 3.6291 -1.7584 -3.7123 12 7 2.0184 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8580 1.1628 2.4117 15 6 2.6343 -0.7081 3.5516 16 7 2.9695 -1.9569 3.6094 17 7 3.4017 -2.3699 4.8679 18 6 3.8191 -3.6602 5.1996 19 6 4.2348 -3.9465 6.4943 20 6 4.6414 -5.2253 6.8202 21 6 4.6461 -6.2177 5.8570 22 6 4.2384 -5.9351 4.5660 23 6 3.8246 -4.6601 4.2345 24 6 3.3480 -1.2249 5.7903 25 1 2.6578 -1.4250 6.6099 26 6 4.7210 -0.9040 6.3222 27 7 4.8558 -0.1250 7.4138 28 8 5.7048 -1.3467 5.7680 29 6 2.8245 -0.0727 4.9104 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 0.7081 1.1608 -3.4844 34 1 2.2490 -1.6318 1.1526 35 1 4.2360 -3.1708 7.2458 36 1 4.9608 -5.4496 7.8272 37 1 4.9685 -7.2160 6.1137 38 1 4.2429 -6.7126 3.8165 39 1 3.5059 -4.4401 3.2262 40 1 4.0689 0.2287 7.8572 41 1 5.7395 0.0812 7.7563 42 1 1.8748 0.2999 5.2944 43 1 3.5583 0.7314 4.8569 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299437191.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:23 Heat of formation + Delta-G solvation = 14.189735 kcal Electronic energy + Delta-G solvation = -27770.210190 eV Core-core repulsion = 23816.713388 eV Total energy + Delta-G solvation = -3953.496802 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.20132 -39.17689 -39.02827 -37.97163 -34.89527 -34.15151 -33.39534 -32.42026 -31.45262 -30.71119 -29.37725 -28.52597 -25.28325 -24.82308 -24.11520 -22.63133 -21.86385 -20.61547 -20.43045 -19.22483 -18.40640 -17.74418 -17.40479 -16.93749 -16.22982 -15.91853 -15.45949 -15.25010 -15.01073 -14.84246 -14.46222 -14.22536 -14.07530 -13.72213 -13.46706 -13.36243 -13.19647 -12.97201 -12.45126 -12.41672 -12.02218 -11.72983 -11.63818 -11.23129 -11.11736 -10.95791 -10.79656 -10.65337 -10.43194 -10.35522 -10.24274 -10.09946 -9.69274 -9.47888 -9.07291 -9.02930 -8.57898 -8.04709 -7.52242 -6.13331 -4.22332 1.01843 1.33042 1.71675 2.01255 2.26263 3.04566 3.26196 3.32922 3.35972 3.63964 3.71181 3.80917 3.83615 4.19330 4.35710 4.44589 4.55570 4.81915 4.85756 5.01713 5.08449 5.19757 5.28288 5.33455 5.41884 5.48290 5.54509 5.82832 5.98796 6.30338 6.35254 6.37421 6.50166 6.65616 6.78926 6.84623 6.91662 7.09268 7.13544 7.31926 7.44580 7.58942 7.68900 7.83666 7.87743 8.10924 8.54796 8.70969 8.95315 9.44691 10.92778 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.013319 B = 0.003178 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.711571 B = 8808.523340 C =10238.444216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.263 3.737 3 H 0.053 0.947 4 C -0.535 4.535 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.682 5.682 13 C 0.578 3.422 14 O -0.541 6.541 15 C 0.044 3.956 16 N -0.179 5.179 17 N -0.448 5.448 18 C 0.236 3.764 19 C -0.171 4.171 20 C -0.082 4.082 21 C -0.164 4.164 22 C -0.082 4.082 23 C -0.154 4.154 24 C 0.091 3.909 25 H 0.113 0.887 26 C 0.507 3.493 27 N -0.851 5.851 28 O -0.513 6.513 29 C -0.098 4.098 30 H 0.028 0.972 31 H 0.016 0.984 32 H 0.093 0.907 33 H 0.265 0.735 34 H 0.398 0.602 35 H 0.112 0.888 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.135 0.865 40 H 0.403 0.597 41 H 0.405 0.595 42 H 0.119 0.881 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.170 -7.516 22.721 24.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.071 0.929 4 C -0.573 4.573 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.329 5.329 13 C 0.359 3.641 14 O -0.417 6.417 15 C -0.151 4.151 16 N 0.011 4.989 17 N -0.248 5.248 18 C 0.140 3.860 19 C -0.193 4.193 20 C -0.101 4.101 21 C -0.184 4.184 22 C -0.100 4.100 23 C -0.176 4.176 24 C -0.019 4.019 25 H 0.131 0.869 26 C 0.288 3.712 27 N -0.417 5.417 28 O -0.386 6.386 29 C -0.139 4.139 30 H 0.047 0.953 31 H 0.035 0.965 32 H 0.111 0.889 33 H 0.075 0.925 34 H 0.231 0.769 35 H 0.130 0.870 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.144 0.856 39 H 0.152 0.848 40 H 0.232 0.768 41 H 0.237 0.763 42 H 0.137 0.863 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.494 -7.801 21.571 23.375 hybrid contribution 0.456 0.128 0.192 0.511 sum 4.950 -7.673 21.763 23.601 Atomic orbital electron populations 1.22091 0.98023 0.99398 1.01117 1.18897 0.91294 0.94102 0.79543 0.92913 1.21210 1.32582 1.13358 0.90145 0.91867 1.24867 0.94752 0.94918 0.99047 1.69892 1.35842 1.22420 1.23966 0.86426 0.79272 0.79269 0.82044 1.20491 1.21056 1.19767 1.46542 1.62510 1.14110 1.09758 1.16611 0.79595 0.86219 0.81672 1.90833 1.51869 1.14595 1.84401 1.25073 1.01844 0.91121 0.97076 1.74884 1.05897 1.14951 1.03131 1.47923 1.66357 1.06529 1.04005 1.17228 0.94511 0.80725 0.93567 1.20455 1.06753 0.97805 0.94294 1.20791 0.98004 0.92031 0.99244 1.20998 1.04310 0.99415 0.93630 1.20981 0.96790 0.95803 0.96447 1.20824 1.04873 0.92272 0.99609 1.22260 0.95274 0.88517 0.95850 0.86906 1.20748 0.91411 0.78523 0.80503 1.43796 1.12846 1.53966 1.31077 1.90836 1.39528 1.50815 1.57445 1.21884 1.04393 0.97126 0.90459 0.95250 0.96477 0.88876 0.92525 0.76855 0.87006 0.85975 0.86192 0.85623 0.84758 0.76843 0.76336 0.86312 0.87374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.26 37.16 0.34 -3.27 16 2 C 0.26 6.65 2.56 -69.08 -0.18 6.47 16 3 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 4 C -0.53 -14.23 8.73 -34.44 -0.30 -14.53 16 5 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 7 N -0.88 -24.67 11.32 55.43 0.63 -24.04 16 8 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 N -0.68 -14.62 5.06 -56.36 -0.29 -14.90 16 13 C 0.58 11.64 7.74 -13.02 -0.10 11.54 16 14 O -0.54 -12.31 16.58 5.17 0.09 -12.22 16 15 C 0.04 0.72 7.27 -80.12 -0.58 0.14 16 16 N -0.18 -2.91 10.89 34.93 0.38 -2.53 16 17 N -0.45 -6.40 3.53 -52.29 -0.18 -6.58 16 18 C 0.24 3.30 6.25 -83.78 -0.52 2.78 16 19 C -0.17 -2.03 8.76 -39.37 -0.34 -2.37 16 20 C -0.08 -0.85 10.04 -39.61 -0.40 -1.24 16 21 C -0.16 -1.67 10.04 -39.53 -0.40 -2.07 16 22 C -0.08 -0.92 10.04 -39.62 -0.40 -1.32 16 23 C -0.15 -2.11 9.64 -39.37 -0.38 -2.49 16 24 C 0.09 0.98 3.21 -68.15 -0.22 0.76 16 25 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 26 C 0.51 5.60 5.55 -10.99 -0.06 5.54 16 27 N -0.85 -5.08 8.87 31.22 0.28 -4.80 16 28 O -0.51 -8.27 16.70 5.55 0.09 -8.18 16 29 C -0.10 -1.16 6.38 -27.04 -0.17 -1.33 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 33 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.40 7.89 8.16 -40.82 -0.33 7.56 16 35 H 0.11 1.16 6.37 -52.48 -0.33 0.83 16 36 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 38 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 39 H 0.13 1.91 7.66 -52.48 -0.40 1.51 16 40 H 0.40 1.04 8.83 -40.82 -0.36 0.68 16 41 H 0.41 2.08 8.93 -40.82 -0.36 1.72 16 42 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.11 1.25 7.73 -51.93 -0.40 0.85 16 LS Contribution 368.69 15.07 5.56 5.56 Total: -1.00 -34.52 368.69 -7.68 -42.20 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -5.40 Total: 9.43 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -3.80 Total: 0.32 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 0.81 Total: -52.85 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: 0.18 Total: -20.40 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.52 -7.68 -42.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299437191.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.391 kcal (2) G-P(sol) polarization free energy of solvation -34.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds