Wall clock time and date at job start Tue Mar 31 2020 06:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37097 * 119.99824 * 2 1 4 4 H 1.07998 * 120.00138 * 202.45648 * 3 2 1 5 5 C 1.38946 * 120.00116 * 22.45714 * 3 2 1 6 6 N 1.31414 * 120.00028 * 11.09415 * 5 3 2 7 7 Si 1.86798 * 120.00185 * 191.08807 * 5 3 2 8 8 H 1.48499 * 109.47076 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.47113 * 120.00277 * 7 5 3 10 10 H 1.48500 * 109.47412 * 240.00175 * 7 5 3 11 11 C 1.34768 * 119.99968 * 180.02562 * 2 1 3 12 12 O 1.21295 * 120.00110 * 179.97438 * 11 2 1 13 13 C 1.50700 * 120.00119 * 359.97438 * 11 2 1 14 14 H 1.08993 * 109.47455 * 320.00425 * 13 11 2 15 15 C 1.53005 * 109.46781 * 80.00326 * 13 11 2 16 16 C 1.50701 * 109.47148 * 184.99788 * 15 13 11 17 17 C 1.34233 * 126.50424 * 264.68875 * 16 15 13 18 18 N 1.36834 * 109.92882 * 179.82892 * 17 16 15 19 19 H 0.97004 * 125.06171 * 180.18287 * 18 17 16 20 20 C 1.37681 * 109.87653 * 0.45046 * 18 17 16 21 21 C 1.39121 * 133.51183 * 179.71488 * 20 18 17 22 22 C 1.37749 * 119.78290 * 180.02562 * 21 20 18 23 23 C 1.38833 * 120.66389 * 359.97438 * 22 21 20 24 24 C 1.36624 * 120.52814 * 0.02562 * 23 22 21 25 25 C 1.39633 * 119.76410 * 0.02562 * 24 23 22 26 26 N 1.46500 * 109.47308 * 200.00222 * 13 11 2 27 27 C 1.34779 * 119.99765 * 300.00022 * 26 13 11 28 28 N 1.34783 * 119.99807 * 179.72166 * 27 26 13 29 29 O 1.21584 * 120.00204 * 0.02562 * 27 26 13 30 30 H 1.09000 * 109.47433 * 273.56779 * 1 2 3 31 31 H 1.09008 * 109.47215 * 33.56460 * 1 2 3 32 32 H 1.09000 * 109.47549 * 153.56652 * 1 2 3 33 33 H 0.97008 * 120.00105 * 179.97438 * 6 5 3 34 34 H 1.08996 * 109.47398 * 305.00350 * 15 13 11 35 35 H 1.09007 * 109.46926 * 65.00088 * 15 13 11 36 36 H 1.07999 * 125.03556 * 359.97438 * 17 16 15 37 37 H 1.08002 * 120.11038 * 0.04067 * 21 20 18 38 38 H 1.07998 * 119.66925 * 180.02562 * 22 21 20 39 39 H 1.08006 * 119.73758 * 179.97438 * 23 22 21 40 40 H 1.08007 * 120.11911 * 180.02562 * 24 23 22 41 41 H 0.96996 * 119.99858 * 120.00551 * 26 13 11 42 42 H 0.96992 * 120.00118 * 180.27501 * 28 27 26 43 43 H 0.97006 * 119.99765 * 0.28319 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1690 1.2228 -0.3573 5 6 1.5347 2.3450 0.4596 6 7 0.3855 2.2710 1.0927 7 14 2.3406 4.0065 0.1779 8 1 3.6190 3.8189 -0.5540 9 1 1.4336 4.8670 -0.6234 10 1 2.6095 4.6546 1.4867 11 6 2.1388 -1.1671 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3854 -2.4722 -0.0005 14 1 0.5222 -2.3935 0.6603 15 6 0.9130 -2.7883 -1.4211 16 6 0.0562 -4.0279 -1.4014 17 6 0.4629 -5.2837 -1.6453 18 7 -0.5933 -6.1462 -1.5325 19 1 -0.5448 -7.1065 -1.6613 20 6 -1.7364 -5.4476 -1.2147 21 6 -3.0579 -5.8223 -0.9943 22 6 -3.9984 -4.8643 -0.6858 23 6 -3.6413 -3.5260 -0.5917 24 6 -2.3493 -3.1358 -0.8043 25 6 -1.3799 -4.0902 -1.1193 26 7 2.2654 -3.5442 0.4713 27 6 3.4027 -3.8249 -0.1952 28 7 4.2152 -4.8074 0.2422 29 8 3.6986 -3.1881 -1.1878 30 1 -0.3634 0.0639 1.0257 31 1 -0.3634 0.8564 -0.5682 32 1 -0.3634 -0.9202 -0.4575 33 1 -0.0442 3.0793 1.4140 34 1 0.3312 -1.9506 -1.8054 35 1 1.7781 -2.9548 -2.0631 36 1 1.4744 -5.5710 -1.8917 37 1 -3.3454 -6.8610 -1.0645 38 1 -5.0236 -5.1573 -0.5146 39 1 -4.3910 -2.7872 -0.3494 40 1 -2.0788 -2.0929 -0.7291 41 1 2.0295 -4.0520 1.2634 42 1 5.0356 -5.0067 -0.2352 43 1 3.9792 -5.3152 1.0343 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299548595.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:07 Heat of formation + Delta-G solvation = -12.773237 kcal Electronic energy + Delta-G solvation = -28978.556735 eV Core-core repulsion = 25023.890731 eV Total energy + Delta-G solvation = -3954.666004 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.21045 -41.17864 -39.63509 -37.72654 -36.58301 -36.03924 -34.59544 -33.53183 -33.16860 -31.05333 -30.09870 -29.28990 -27.90526 -26.56831 -24.84080 -23.64697 -22.56742 -22.45291 -20.56340 -20.18410 -19.41693 -18.82820 -18.59946 -17.95608 -17.54292 -17.14894 -16.59972 -16.28160 -16.13636 -15.79536 -15.55126 -15.31717 -15.09729 -15.00389 -14.86764 -14.60343 -14.24594 -14.03063 -13.58805 -13.42412 -13.14572 -12.98682 -12.83909 -12.77041 -12.59057 -12.43850 -12.28011 -12.16103 -12.11237 -11.58649 -11.01854 -10.92458 -10.59979 -10.45658 -10.32206 -9.65647 -9.52365 -9.04995 -8.46983 -8.25776 -5.90535 0.30239 0.80460 1.36533 1.40553 1.54602 1.74810 1.97294 2.23912 2.32382 2.33462 2.57951 3.07462 3.14694 3.20525 3.76516 3.88527 3.96581 4.05419 4.21354 4.31040 4.34386 4.37201 4.51295 4.53765 4.61984 4.80138 4.86614 5.01703 5.08977 5.13552 5.17077 5.34208 5.43877 5.49531 5.60470 5.69675 5.81121 5.88376 5.93802 6.07346 6.16972 6.22443 6.34024 6.57959 6.79993 7.26576 7.34248 7.56488 7.98778 8.18197 8.75172 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.011613 B = 0.004461 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.582554 B = 6274.645051 C = 8342.306272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.468 5.468 3 C -0.337 4.337 4 H 0.062 0.938 5 C -0.001 4.001 6 N -0.897 5.897 7 Si 0.984 3.016 8 H -0.280 1.280 9 H -0.265 1.265 10 H -0.274 1.274 11 C 0.430 3.570 12 O -0.601 6.601 13 C 0.184 3.816 14 H 0.109 0.891 15 C -0.044 4.044 16 C -0.176 4.176 17 C 0.071 3.929 18 N -0.581 5.581 19 H 0.430 0.570 20 C 0.085 3.915 21 C -0.132 4.132 22 C -0.103 4.103 23 C -0.151 4.151 24 C -0.093 4.093 25 C -0.123 4.123 26 N -0.714 5.714 27 C 0.703 3.297 28 N -0.853 5.853 29 O -0.614 6.614 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.272 0.728 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.174 0.826 37 H 0.145 0.855 38 H 0.151 0.849 39 H 0.136 0.864 40 H 0.114 0.886 41 H 0.410 0.590 42 H 0.416 0.584 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.479 -21.153 -0.766 23.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.189 5.189 3 C -0.465 4.465 4 H 0.080 0.920 5 C -0.202 4.202 6 N -0.537 5.537 7 Si 0.808 3.192 8 H -0.205 1.205 9 H -0.190 1.190 10 H -0.199 1.199 11 C 0.218 3.782 12 O -0.485 6.485 13 C 0.073 3.927 14 H 0.127 0.873 15 C -0.083 4.083 16 C -0.183 4.183 17 C -0.056 4.056 18 N -0.185 5.185 19 H 0.270 0.730 20 C -0.023 4.023 21 C -0.153 4.153 22 C -0.122 4.122 23 C -0.170 4.170 24 C -0.112 4.112 25 C -0.128 4.128 26 N -0.370 5.370 27 C 0.402 3.598 28 N -0.423 5.423 29 O -0.493 6.493 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.191 0.809 37 H 0.163 0.837 38 H 0.168 0.832 39 H 0.153 0.847 40 H 0.132 0.868 41 H 0.245 0.755 42 H 0.248 0.752 43 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -8.890 -20.529 -1.514 22.422 hybrid contribution 0.832 0.477 0.447 1.058 sum -8.057 -20.052 -1.067 21.636 Atomic orbital electron populations 1.21501 0.79610 0.99611 1.01205 1.43771 1.06474 1.04432 1.64207 1.19541 0.98879 0.86127 1.42001 0.92001 1.25966 0.97073 1.02380 0.94830 1.70066 1.17543 1.30055 1.35989 0.85017 0.78175 0.77765 0.78204 1.20468 1.18953 1.19899 1.21358 0.88430 0.86339 0.82107 1.90530 1.15748 1.87396 1.54781 1.20373 0.90756 0.83842 0.97689 0.87296 1.20050 0.97978 0.95265 0.95018 1.19955 0.92103 0.94074 1.12132 1.21604 0.92722 0.88789 1.02508 1.41598 1.05495 1.09788 1.61594 0.73040 1.18455 0.89339 0.91036 1.03452 1.20331 0.88945 1.01033 1.04966 1.21151 0.99984 0.92127 0.98925 1.20905 0.95778 0.97217 1.03103 1.20530 0.93021 0.98667 0.98958 1.19298 0.93308 0.93611 1.06588 1.44386 1.22780 1.37586 1.32283 1.16096 0.80431 0.80308 0.83001 1.42686 1.26336 1.38561 1.34713 1.90934 1.75048 1.53389 1.29902 0.93294 0.93218 0.91841 0.91841 0.91534 0.91079 0.80868 0.83748 0.83158 0.84661 0.86773 0.75460 0.75178 0.76073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.71 8.14 127.77 1.04 6.75 16 2 N -0.47 -25.53 3.02 -658.89 -1.99 -27.52 16 3 C -0.34 -20.36 9.29 84.04 0.78 -19.58 16 4 H 0.06 4.08 7.40 -2.91 -0.02 4.06 16 5 C 0.00 -0.07 5.13 84.93 0.44 0.36 16 6 N -0.90 -48.85 10.58 21.66 0.23 -48.63 16 7 Si 0.98 44.77 29.57 68.60 2.03 46.80 16 8 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 9 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 C 0.43 22.50 6.62 87.66 0.58 23.08 16 12 O -0.60 -36.68 13.37 19.39 0.26 -36.42 16 13 C 0.18 7.04 2.15 44.25 0.10 7.14 16 14 H 0.11 3.83 7.15 -2.39 -0.02 3.81 16 15 C -0.04 -1.58 4.73 29.85 0.14 -1.43 16 16 C -0.18 -5.04 5.30 -18.63 -0.10 -5.14 16 17 C 0.07 1.60 11.73 83.00 0.97 2.58 16 18 N -0.58 -10.30 6.07 -187.62 -1.14 -11.44 16 19 H 0.43 4.42 8.96 -92.71 -0.83 3.59 16 20 C 0.08 1.86 7.28 39.03 0.28 2.14 16 21 C -0.13 -2.34 10.08 22.37 0.23 -2.11 16 22 C -0.10 -1.81 10.01 22.30 0.22 -1.59 16 23 C -0.15 -3.25 9.97 22.03 0.22 -3.03 16 24 C -0.09 -2.48 10.05 22.23 0.22 -2.25 16 25 C -0.12 -3.37 6.35 -20.20 -0.13 -3.50 16 26 N -0.71 -22.74 4.92 -461.40 -2.27 -25.01 16 27 C 0.70 24.57 7.59 179.05 1.36 25.93 16 28 N -0.85 -19.16 8.88 -184.74 -1.64 -20.80 16 29 O -0.61 -28.86 13.03 18.48 0.24 -28.62 16 30 H 0.05 2.31 7.46 -2.39 -0.02 2.29 16 31 H 0.05 2.42 7.15 -2.38 -0.02 2.40 16 32 H 0.06 2.43 3.60 -2.39 -0.01 2.43 16 33 H 0.27 13.80 8.31 -92.70 -0.77 13.03 16 34 H 0.07 2.53 6.51 -2.39 -0.02 2.52 16 35 H 0.07 2.96 6.04 -2.38 -0.01 2.95 16 36 H 0.17 3.54 8.06 -2.91 -0.02 3.51 16 37 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 38 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 39 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 40 H 0.11 3.17 6.91 -2.91 -0.02 3.15 16 41 H 0.41 9.72 8.84 -92.71 -0.82 8.90 16 42 H 0.42 8.52 8.93 -92.71 -0.83 7.70 16 43 H 0.41 5.86 8.84 -92.70 -0.82 5.04 16 Total: -1.00 -85.39 353.53 -0.10 -85.49 By element: Atomic # 1 Polarization: 38.98 SS G_CDS: -2.17 Total: 36.81 kcal Atomic # 6 Polarization: 22.99 SS G_CDS: 6.36 Total: 29.34 kcal Atomic # 7 Polarization: -126.59 SS G_CDS: -6.81 Total: -133.39 kcal Atomic # 8 Polarization: -65.54 SS G_CDS: 0.50 Total: -65.04 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -85.39 -0.10 -85.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299548595.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.716 kcal (2) G-P(sol) polarization free energy of solvation -85.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds