Wall clock time and date at job start Tue Mar 31 2020 06:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37096 * 120.00275 * 2 1 4 4 H 1.07999 * 120.00152 * 154.25062 * 3 2 1 5 5 C 1.38952 * 119.99919 * 334.25616 * 3 2 1 6 6 N 1.31405 * 119.99960 * 3.06177 * 5 3 2 7 7 Si 1.86800 * 119.99740 * 183.07003 * 5 3 2 8 8 H 1.48497 * 109.47436 * 89.99769 * 7 5 3 9 9 H 1.48506 * 109.46720 * 209.99650 * 7 5 3 10 10 H 1.48506 * 109.47045 * 329.99242 * 7 5 3 11 11 C 1.34782 * 119.99866 * 179.73171 * 2 1 3 12 12 O 1.21284 * 120.00013 * 179.97438 * 11 2 1 13 13 C 1.50699 * 119.99860 * 359.97438 * 11 2 1 14 14 H 1.08996 * 109.47438 * 39.99664 * 13 11 2 15 15 C 1.53010 * 109.46947 * 280.00158 * 13 11 2 16 16 C 1.50702 * 109.46767 * 175.00057 * 15 13 11 17 17 C 1.34239 * 126.50326 * 264.68199 * 16 15 13 18 18 N 1.36826 * 109.92880 * 179.83811 * 17 16 15 19 19 H 0.97007 * 125.06139 * 180.18719 * 18 17 16 20 20 C 1.37682 * 109.87730 * 0.44504 * 18 17 16 21 21 C 1.39122 * 133.51310 * 179.71018 * 20 18 17 22 22 C 1.37743 * 119.78576 * 180.02562 * 21 20 18 23 23 C 1.38837 * 120.66519 * 0.02562 * 22 21 20 24 24 C 1.36630 * 120.52294 * 359.97438 * 23 22 21 25 25 C 1.39624 * 119.76658 * 0.02562 * 24 23 22 26 26 N 1.46494 * 109.47213 * 160.00263 * 13 11 2 27 27 C 1.34779 * 120.00012 * 59.99701 * 26 13 11 28 28 N 1.34773 * 120.00013 * 180.02562 * 27 26 13 29 29 O 1.21582 * 120.00013 * 0.02562 * 27 26 13 30 30 H 1.08998 * 109.47014 * 84.37625 * 1 2 3 31 31 H 1.09000 * 109.47243 * 204.37901 * 1 2 3 32 32 H 1.09004 * 109.46360 * 324.37713 * 1 2 3 33 33 H 0.97001 * 119.99897 * 180.02562 * 6 5 3 34 34 H 1.08999 * 109.46946 * 294.99855 * 15 13 11 35 35 H 1.08998 * 109.47148 * 54.99745 * 15 13 11 36 36 H 1.08004 * 125.03157 * 359.97438 * 17 16 15 37 37 H 1.08003 * 120.10681 * 0.05535 * 21 20 18 38 38 H 1.08000 * 119.67126 * 180.02562 * 22 21 20 39 39 H 1.07998 * 119.74108 * 179.97438 * 23 22 21 40 40 H 1.08006 * 120.11436 * 180.02562 * 24 23 22 41 41 H 0.97003 * 119.99800 * 239.99673 * 26 13 11 42 42 H 0.97003 * 119.99800 * 359.97438 * 28 27 26 43 43 H 0.96998 * 120.00644 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.1501 1.2337 0.4063 5 6 1.5593 2.3309 -0.5227 6 7 0.3215 2.2885 -0.9619 7 14 2.5241 3.9285 -0.6012 8 1 3.2440 4.0089 -1.8975 9 1 1.5903 5.0770 -0.4815 10 1 3.5049 3.9698 0.5132 11 6 2.1389 -1.1672 0.0055 12 8 3.3518 -1.1673 0.0050 13 6 1.3854 -2.4723 0.0122 14 1 0.5217 -2.3966 -0.6484 15 6 0.9139 -2.7817 1.4346 16 6 0.0570 -4.0213 1.4212 17 6 -1.2830 -4.0651 1.3553 18 7 -1.7080 -5.3656 1.3613 19 1 -2.6347 -5.6493 1.3184 20 6 -0.6249 -6.2117 1.4431 21 6 -0.4919 -7.5958 1.4882 22 6 0.7617 -8.1603 1.5721 23 6 1.8967 -7.3617 1.6128 24 6 1.7891 -6.0003 1.5698 25 6 0.5281 -5.4069 1.4847 26 7 2.2650 -3.5465 -0.4552 27 6 3.4028 -3.8240 0.2117 28 7 4.2123 -4.8119 -0.2186 29 8 3.6989 -3.1832 1.2016 30 1 -0.3633 0.1007 -1.0227 31 1 -0.3634 -0.9360 0.4242 32 1 -0.3632 0.8354 0.5986 33 1 -0.0911 3.0868 -1.3271 34 1 1.7794 -2.9451 2.0767 35 1 0.3325 -1.9421 1.8153 36 1 -1.9297 -3.2016 1.3028 37 1 -1.3687 -8.2256 1.4570 38 1 0.8629 -9.2350 1.6066 39 1 2.8723 -7.8201 1.6791 40 1 2.6764 -5.3853 1.6015 41 1 2.0284 -4.0580 -1.2448 42 1 3.9757 -5.3235 -1.0081 43 1 5.0310 -5.0120 0.2616 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299548596.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:10 Heat of formation + Delta-G solvation = 19.472553 kcal Electronic energy + Delta-G solvation = -29203.029555 eV Core-core repulsion = 25249.761833 eV Total energy + Delta-G solvation = -3953.267722 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.25544 -39.64489 -37.90421 -36.85308 -34.76498 -34.30203 -33.17559 -32.09291 -31.46776 -30.03690 -29.23788 -27.78749 -26.09745 -24.73645 -23.29769 -22.74646 -21.68116 -20.92167 -19.20166 -18.66517 -18.13712 -17.64703 -16.73889 -16.63198 -16.24938 -15.72552 -15.45397 -14.93922 -14.50220 -14.31865 -14.20912 -13.98631 -13.79677 -13.55132 -13.44447 -13.28061 -12.73580 -12.57480 -12.29806 -11.93335 -11.63795 -11.61258 -11.23640 -11.17154 -11.03719 -10.90768 -10.77782 -10.53631 -10.26924 -10.14254 -9.54782 -9.33146 -9.06070 -8.92587 -8.83843 -8.16095 -7.90266 -7.52175 -7.43263 -6.17021 -3.75997 1.19732 1.68623 2.76696 3.16478 3.25272 3.31856 3.36501 3.42578 3.94857 4.02033 4.14435 4.24797 4.79026 4.83839 4.93412 5.03363 5.11864 5.22021 5.24271 5.40735 5.48569 5.61840 5.72190 5.81195 5.88776 5.91291 6.02141 6.12808 6.28977 6.39242 6.55559 6.61801 6.71330 6.80798 6.95673 7.04315 7.09251 7.18434 7.24639 7.38777 7.39899 7.57645 7.67465 8.29255 8.54350 8.65714 9.30656 9.39843 9.57698 10.17355 10.84725 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.019386 B = 0.003747 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.973267 B = 7470.383690 C = 8639.435616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.457 5.457 3 C -0.294 4.294 4 H 0.095 0.905 5 C 0.029 3.971 6 N -0.892 5.892 7 Si 0.925 3.075 8 H -0.279 1.279 9 H -0.285 1.285 10 H -0.271 1.271 11 C 0.443 3.557 12 O -0.551 6.551 13 C 0.168 3.832 14 H 0.094 0.906 15 C -0.064 4.064 16 C -0.147 4.147 17 C 0.041 3.959 18 N -0.598 5.598 19 H 0.412 0.588 20 C 0.093 3.907 21 C -0.138 4.138 22 C -0.102 4.102 23 C -0.155 4.155 24 C -0.062 4.062 25 C -0.093 4.093 26 N -0.725 5.725 27 C 0.714 3.286 28 N -0.879 5.879 29 O -0.561 6.561 30 H 0.055 0.945 31 H 0.023 0.977 32 H 0.070 0.930 33 H 0.264 0.736 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.171 0.829 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.128 0.872 41 H 0.390 0.610 42 H 0.388 0.612 43 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.253 -19.500 1.272 20.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.178 5.178 3 C -0.422 4.422 4 H 0.112 0.888 5 C -0.173 4.173 6 N -0.534 5.534 7 Si 0.752 3.248 8 H -0.205 1.205 9 H -0.211 1.211 10 H -0.195 1.195 11 C 0.229 3.771 12 O -0.432 6.432 13 C 0.058 3.942 14 H 0.111 0.889 15 C -0.103 4.103 16 C -0.153 4.153 17 C -0.084 4.084 18 N -0.201 5.201 19 H 0.249 0.751 20 C -0.015 4.015 21 C -0.159 4.159 22 C -0.121 4.121 23 C -0.175 4.175 24 C -0.080 4.080 25 C -0.098 4.098 26 N -0.379 5.379 27 C 0.413 3.587 28 N -0.448 5.448 29 O -0.436 6.436 30 H 0.073 0.927 31 H 0.041 0.959 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.188 0.812 37 H 0.132 0.868 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.145 0.855 41 H 0.222 0.778 42 H 0.215 0.785 43 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -5.809 -18.644 2.042 19.635 hybrid contribution -0.250 0.185 -0.859 0.913 sum -6.059 -18.460 1.183 19.465 Atomic orbital electron populations 1.21631 0.81466 0.98062 1.01951 1.43527 1.05285 1.04490 1.64533 1.19617 1.00723 0.84901 1.36992 0.88753 1.25334 0.96122 0.99747 0.96054 1.69991 1.11946 1.29504 1.41911 0.85945 0.79185 0.80812 0.78843 1.20522 1.21106 1.19542 1.20272 0.88520 0.84625 0.83706 1.90578 1.13498 1.86316 1.52799 1.20629 0.91192 0.86378 0.95970 0.88855 1.20424 0.99484 0.93381 0.96988 1.20338 0.92420 0.93147 1.09443 1.21689 0.95333 0.86052 1.05334 1.41675 1.07538 1.05043 1.65808 0.75143 1.18284 0.87209 0.91844 1.04135 1.19931 0.97892 0.90599 1.07485 1.20737 0.91714 0.99203 1.00465 1.20580 0.98209 0.93515 1.05162 1.20606 0.96360 0.94515 0.96554 1.19098 0.92416 0.92526 1.05756 1.44576 1.23191 1.38065 1.32102 1.15714 0.79870 0.79774 0.83380 1.43054 1.27450 1.39542 1.34711 1.90967 1.73854 1.51252 1.27492 0.92662 0.95890 0.91097 0.92589 0.88297 0.89949 0.81208 0.86809 0.86298 0.86515 0.85464 0.77754 0.78492 0.76119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.47 8.15 59.85 0.49 2.96 16 2 N -0.46 -11.79 3.02 -122.19 -0.37 -12.16 16 3 C -0.29 -8.42 9.25 -14.93 -0.14 -8.56 16 4 H 0.09 2.88 7.44 -52.49 -0.39 2.49 16 5 C 0.03 0.78 5.37 -17.47 -0.09 0.68 16 6 N -0.89 -23.81 10.18 55.50 0.56 -23.25 16 7 Si 0.92 21.52 29.55 -169.99 -5.02 16.49 16 8 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 9 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 11 C 0.44 11.00 6.62 -10.98 -0.07 10.93 16 12 O -0.55 -15.93 13.40 -17.93 -0.24 -16.17 16 13 C 0.17 3.13 2.15 -69.08 -0.15 2.98 16 14 H 0.09 1.56 7.11 -51.93 -0.37 1.19 16 15 C -0.06 -1.11 4.72 -27.88 -0.13 -1.24 16 16 C -0.15 -2.13 5.32 -102.71 -0.55 -2.67 16 17 C 0.04 0.48 11.73 -16.73 -0.20 0.28 16 18 N -0.60 -6.12 6.07 -10.65 -0.06 -6.18 16 19 H 0.41 2.84 8.96 -40.82 -0.37 2.48 16 20 C 0.09 1.14 7.28 -83.99 -0.61 0.53 16 21 C -0.14 -1.47 10.08 -39.43 -0.40 -1.87 16 22 C -0.10 -1.05 10.01 -39.54 -0.40 -1.45 16 23 C -0.16 -1.79 9.97 -39.94 -0.40 -2.18 16 24 C -0.06 -0.86 9.40 -39.65 -0.37 -1.23 16 25 C -0.09 -1.34 6.19 -105.14 -0.65 -1.99 16 26 N -0.72 -11.94 4.71 -59.81 -0.28 -12.22 16 27 C 0.71 12.74 4.72 -86.92 -0.41 12.33 16 28 N -0.88 -11.01 8.49 27.63 0.23 -10.78 16 29 O -0.56 -12.92 12.84 -18.19 -0.23 -13.15 16 30 H 0.05 1.26 7.41 -51.93 -0.38 0.88 16 31 H 0.02 0.40 4.70 -51.93 -0.24 0.16 16 32 H 0.07 1.67 7.11 -51.93 -0.37 1.30 16 33 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 34 H 0.10 2.04 6.04 -51.93 -0.31 1.73 16 35 H 0.08 1.41 6.57 -51.93 -0.34 1.07 16 36 H 0.17 1.55 8.06 -52.48 -0.42 1.12 16 37 H 0.11 0.93 8.06 -52.48 -0.42 0.51 16 38 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 39 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.13 1.96 4.81 -52.48 -0.25 1.71 16 41 H 0.39 5.18 8.84 -40.82 -0.36 4.82 16 42 H 0.39 3.59 8.84 -40.82 -0.36 3.23 16 43 H 0.41 4.65 8.93 -40.82 -0.36 4.28 16 LS Contribution 347.85 15.07 5.24 5.24 Total: -1.00 -37.04 347.85 -9.19 -46.23 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: -4.94 Total: 16.44 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: -4.08 Total: 9.50 kcal Atomic # 7 Polarization: -64.67 SS G_CDS: 0.08 Total: -64.59 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -0.47 Total: -29.32 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -37.04 -9.19 -46.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299548596.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.707 kcal (2) G-P(sol) polarization free energy of solvation -37.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds