Wall clock time and date at job start Tue Mar 31 2020 06:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37096 * 120.00275 * 2 1 4 4 H 1.07999 * 120.00152 * 154.25062 * 3 2 1 5 5 C 1.38952 * 119.99919 * 334.25616 * 3 2 1 6 6 N 1.31405 * 119.99960 * 3.06177 * 5 3 2 7 7 Si 1.86800 * 119.99740 * 183.07003 * 5 3 2 8 8 H 1.48497 * 109.47436 * 89.99769 * 7 5 3 9 9 H 1.48506 * 109.46720 * 209.99650 * 7 5 3 10 10 H 1.48506 * 109.47045 * 329.99242 * 7 5 3 11 11 C 1.34782 * 119.99866 * 179.73171 * 2 1 3 12 12 O 1.21284 * 120.00013 * 179.97438 * 11 2 1 13 13 C 1.50699 * 119.99860 * 359.97438 * 11 2 1 14 14 H 1.08996 * 109.47438 * 39.99664 * 13 11 2 15 15 C 1.53010 * 109.46947 * 280.00158 * 13 11 2 16 16 C 1.50702 * 109.46767 * 175.00057 * 15 13 11 17 17 C 1.34239 * 126.50326 * 264.68199 * 16 15 13 18 18 N 1.36826 * 109.92880 * 179.83811 * 17 16 15 19 19 H 0.97007 * 125.06139 * 180.18719 * 18 17 16 20 20 C 1.37682 * 109.87730 * 0.44504 * 18 17 16 21 21 C 1.39122 * 133.51310 * 179.71018 * 20 18 17 22 22 C 1.37743 * 119.78576 * 180.02562 * 21 20 18 23 23 C 1.38837 * 120.66519 * 0.02562 * 22 21 20 24 24 C 1.36630 * 120.52294 * 359.97438 * 23 22 21 25 25 C 1.39624 * 119.76658 * 0.02562 * 24 23 22 26 26 N 1.46494 * 109.47213 * 160.00263 * 13 11 2 27 27 C 1.34779 * 120.00012 * 59.99701 * 26 13 11 28 28 N 1.34773 * 120.00013 * 180.02562 * 27 26 13 29 29 O 1.21582 * 120.00013 * 0.02562 * 27 26 13 30 30 H 1.08998 * 109.47014 * 84.37625 * 1 2 3 31 31 H 1.09000 * 109.47243 * 204.37901 * 1 2 3 32 32 H 1.09004 * 109.46360 * 324.37713 * 1 2 3 33 33 H 0.97001 * 119.99897 * 180.02562 * 6 5 3 34 34 H 1.08999 * 109.46946 * 294.99855 * 15 13 11 35 35 H 1.08998 * 109.47148 * 54.99745 * 15 13 11 36 36 H 1.08004 * 125.03157 * 359.97438 * 17 16 15 37 37 H 1.08003 * 120.10681 * 0.05535 * 21 20 18 38 38 H 1.08000 * 119.67126 * 180.02562 * 22 21 20 39 39 H 1.07998 * 119.74108 * 179.97438 * 23 22 21 40 40 H 1.08006 * 120.11436 * 180.02562 * 24 23 22 41 41 H 0.97003 * 119.99800 * 239.99673 * 26 13 11 42 42 H 0.97003 * 119.99800 * 359.97438 * 28 27 26 43 43 H 0.96998 * 120.00644 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.1501 1.2337 0.4063 5 6 1.5593 2.3309 -0.5227 6 7 0.3215 2.2885 -0.9619 7 14 2.5241 3.9285 -0.6012 8 1 3.2440 4.0089 -1.8975 9 1 1.5903 5.0770 -0.4815 10 1 3.5049 3.9698 0.5132 11 6 2.1389 -1.1672 0.0055 12 8 3.3518 -1.1673 0.0050 13 6 1.3854 -2.4723 0.0122 14 1 0.5217 -2.3966 -0.6484 15 6 0.9139 -2.7817 1.4346 16 6 0.0570 -4.0213 1.4212 17 6 -1.2830 -4.0651 1.3553 18 7 -1.7080 -5.3656 1.3613 19 1 -2.6347 -5.6493 1.3184 20 6 -0.6249 -6.2117 1.4431 21 6 -0.4919 -7.5958 1.4882 22 6 0.7617 -8.1603 1.5721 23 6 1.8967 -7.3617 1.6128 24 6 1.7891 -6.0003 1.5698 25 6 0.5281 -5.4069 1.4847 26 7 2.2650 -3.5465 -0.4552 27 6 3.4028 -3.8240 0.2117 28 7 4.2123 -4.8119 -0.2186 29 8 3.6989 -3.1832 1.2016 30 1 -0.3633 0.1007 -1.0227 31 1 -0.3634 -0.9360 0.4242 32 1 -0.3632 0.8354 0.5986 33 1 -0.0911 3.0868 -1.3271 34 1 1.7794 -2.9451 2.0767 35 1 0.3325 -1.9421 1.8153 36 1 -1.9297 -3.2016 1.3028 37 1 -1.3687 -8.2256 1.4570 38 1 0.8629 -9.2350 1.6066 39 1 2.8723 -7.8201 1.6791 40 1 2.6764 -5.3853 1.6015 41 1 2.0284 -4.0580 -1.2448 42 1 3.9757 -5.3235 -1.0081 43 1 5.0310 -5.0120 0.2616 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299548596.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:10 Heat of formation + Delta-G solvation = -9.088126 kcal Electronic energy + Delta-G solvation = -29204.268039 eV Core-core repulsion = 25249.761833 eV Total energy + Delta-G solvation = -3954.506206 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.21461 -41.13358 -39.64251 -37.73697 -36.56144 -35.98809 -34.54175 -33.50182 -33.14361 -31.13959 -30.13040 -29.07259 -27.92170 -26.47472 -24.87481 -23.63062 -22.54417 -22.42596 -20.45493 -20.17597 -19.47057 -18.77286 -18.59665 -17.93852 -17.52900 -17.11613 -16.63136 -16.33081 -16.08214 -15.79529 -15.57630 -15.30752 -15.10602 -14.98521 -14.80664 -14.37127 -14.18870 -13.98396 -13.63944 -13.44167 -13.05695 -12.93815 -12.80194 -12.68099 -12.59198 -12.45391 -12.30817 -12.12244 -12.08982 -11.54768 -10.97480 -10.91374 -10.56887 -10.41444 -10.29211 -9.61713 -9.52923 -9.03148 -8.43694 -8.22891 -5.90884 0.31791 0.80555 1.37858 1.40264 1.51987 1.77497 2.03861 2.27239 2.33291 2.38176 2.60691 3.08476 3.16554 3.22765 3.79690 3.94282 3.99784 4.09671 4.21942 4.30896 4.38934 4.41646 4.54508 4.55435 4.70700 4.77270 4.93483 5.04286 5.05942 5.20475 5.24413 5.38177 5.48847 5.54636 5.65327 5.70080 5.81386 5.89660 5.97625 6.08601 6.19713 6.23949 6.35238 6.61544 6.84892 7.28440 7.35794 7.59221 8.01910 8.21032 8.75200 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.019386 B = 0.003747 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.973267 B = 7470.383690 C = 8639.435616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.471 5.471 3 C -0.336 4.336 4 H 0.058 0.942 5 C 0.001 3.999 6 N -0.896 5.896 7 Si 0.982 3.018 8 H -0.277 1.277 9 H -0.265 1.265 10 H -0.278 1.278 11 C 0.431 3.569 12 O -0.602 6.602 13 C 0.182 3.818 14 H 0.120 0.880 15 C -0.045 4.045 16 C -0.187 4.187 17 C 0.068 3.932 18 N -0.581 5.581 19 H 0.431 0.569 20 C 0.081 3.919 21 C -0.133 4.133 22 C -0.104 4.104 23 C -0.152 4.152 24 C -0.090 4.090 25 C -0.116 4.116 26 N -0.715 5.715 27 C 0.711 3.289 28 N -0.856 5.856 29 O -0.617 6.617 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.271 0.729 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.200 0.800 37 H 0.144 0.856 38 H 0.150 0.850 39 H 0.131 0.869 40 H 0.103 0.897 41 H 0.407 0.593 42 H 0.408 0.592 43 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.919 -21.618 0.399 23.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.192 5.192 3 C -0.464 4.464 4 H 0.076 0.924 5 C -0.200 4.200 6 N -0.536 5.536 7 Si 0.807 3.193 8 H -0.203 1.203 9 H -0.189 1.189 10 H -0.203 1.203 11 C 0.219 3.781 12 O -0.486 6.486 13 C 0.072 3.928 14 H 0.137 0.863 15 C -0.085 4.085 16 C -0.194 4.194 17 C -0.059 4.059 18 N -0.185 5.185 19 H 0.271 0.729 20 C -0.027 4.027 21 C -0.153 4.153 22 C -0.123 4.123 23 C -0.171 4.171 24 C -0.108 4.108 25 C -0.121 4.121 26 N -0.371 5.371 27 C 0.410 3.590 28 N -0.426 5.426 29 O -0.496 6.496 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.217 0.783 37 H 0.162 0.838 38 H 0.167 0.833 39 H 0.149 0.851 40 H 0.121 0.879 41 H 0.243 0.757 42 H 0.238 0.762 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -8.539 -20.840 1.114 22.550 hybrid contribution 0.575 0.751 -0.574 1.107 sum -7.965 -20.089 0.540 21.617 Atomic orbital electron populations 1.21568 0.79266 0.99668 1.01410 1.43782 1.06726 1.04187 1.64544 1.19470 1.00295 0.87179 1.39483 0.92354 1.25962 0.97022 1.01938 0.95075 1.70056 1.12159 1.30515 1.40860 0.85104 0.78132 0.77727 0.78348 1.20329 1.18940 1.20346 1.21416 0.88441 0.86355 0.81917 1.90532 1.15983 1.87414 1.54634 1.20492 0.91080 0.83517 0.97761 0.86255 1.20058 0.98438 0.95019 0.94958 1.20036 0.93414 0.92112 1.13805 1.22022 0.94528 0.87369 1.01980 1.41641 1.08205 1.04236 1.64443 0.72882 1.18482 0.87015 0.92564 1.04631 1.20324 0.99139 0.90160 1.05696 1.21106 0.91096 1.00650 0.99457 1.20823 0.99691 0.92736 1.03881 1.20538 0.95721 0.95407 0.99169 1.19271 0.93378 0.92835 1.06585 1.44383 1.22730 1.37447 1.32496 1.15928 0.80339 0.80007 0.82731 1.42739 1.26712 1.38084 1.35017 1.90934 1.75157 1.53571 1.29965 0.93411 0.91445 0.92941 0.91911 0.92380 0.90255 0.78309 0.83829 0.83256 0.85074 0.87899 0.75746 0.76247 0.75315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.42 8.15 127.77 1.04 6.46 16 2 N -0.47 -25.16 3.02 -658.88 -1.99 -27.15 16 3 C -0.34 -20.09 9.25 84.04 0.78 -19.31 16 4 H 0.06 3.82 7.44 -2.91 -0.02 3.80 16 5 C 0.00 0.06 5.37 84.93 0.46 0.51 16 6 N -0.90 -47.60 10.18 21.66 0.22 -47.38 16 7 Si 0.98 44.63 29.55 68.60 2.03 46.65 16 8 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 9 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 C 0.43 22.30 6.62 87.66 0.58 22.88 16 12 O -0.60 -36.87 13.40 19.41 0.26 -36.61 16 13 C 0.18 6.84 2.15 44.25 0.10 6.94 16 14 H 0.12 3.82 7.11 -2.39 -0.02 3.80 16 15 C -0.05 -1.61 4.72 29.85 0.14 -1.47 16 16 C -0.19 -5.24 5.32 -18.63 -0.10 -5.34 16 17 C 0.07 1.38 11.73 83.00 0.97 2.35 16 18 N -0.58 -9.79 6.07 -187.62 -1.14 -10.93 16 19 H 0.43 4.05 8.96 -92.70 -0.83 3.22 16 20 C 0.08 1.76 7.28 39.03 0.28 2.04 16 21 C -0.13 -2.33 10.08 22.36 0.23 -2.11 16 22 C -0.10 -1.80 10.01 22.30 0.22 -1.58 16 23 C -0.15 -3.26 9.97 22.04 0.22 -3.04 16 24 C -0.09 -2.48 9.40 22.23 0.21 -2.27 16 25 C -0.12 -3.22 6.19 -20.20 -0.13 -3.34 16 26 N -0.71 -23.87 4.71 -461.42 -2.17 -26.04 16 27 C 0.71 26.41 4.72 179.05 0.84 27.26 16 28 N -0.86 -21.73 8.49 -184.75 -1.57 -23.30 16 29 O -0.62 -30.38 12.84 18.48 0.24 -30.14 16 30 H 0.05 2.15 7.41 -2.39 -0.02 2.13 16 31 H 0.07 2.30 4.70 -2.39 -0.01 2.29 16 32 H 0.05 2.47 7.11 -2.38 -0.02 2.45 16 33 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 34 H 0.06 2.57 6.04 -2.39 -0.01 2.55 16 35 H 0.08 2.74 6.57 -2.39 -0.02 2.73 16 36 H 0.20 2.77 8.06 -2.91 -0.02 2.75 16 37 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 38 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 39 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 40 H 0.10 3.33 4.81 -2.91 -0.01 3.31 16 41 H 0.41 10.52 8.84 -92.71 -0.82 9.70 16 42 H 0.41 7.21 8.84 -92.71 -0.82 6.39 16 43 H 0.41 9.67 8.93 -92.71 -0.83 8.84 16 Total: -1.00 -86.70 347.85 -0.45 -87.15 By element: Atomic # 1 Polarization: 39.96 SS G_CDS: -2.17 Total: 37.79 kcal Atomic # 6 Polarization: 24.13 SS G_CDS: 5.85 Total: 29.97 kcal Atomic # 7 Polarization: -128.16 SS G_CDS: -6.65 Total: -134.81 kcal Atomic # 8 Polarization: -67.25 SS G_CDS: 0.50 Total: -66.75 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -86.70 -0.45 -87.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299548596.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.061 kcal (2) G-P(sol) polarization free energy of solvation -86.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds